Wall clock time and date at job start Tue Mar 31 2020 12:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34228 * 116.99881 * 2 1 4 4 O 1.20829 * 120.00188 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99776 * 179.97438 * 3 2 1 6 6 H 1.09008 * 109.46797 * 60.00724 * 5 3 2 7 7 C 1.52997 * 109.47135 * 180.02562 * 5 3 2 8 8 N 1.46505 * 109.47212 * 295.00226 * 7 5 3 9 9 C 1.34771 * 119.99622 * 179.97438 * 8 7 5 10 10 O 1.21280 * 120.00597 * 0.02562 * 9 8 7 11 11 C 1.50701 * 119.99622 * 179.97438 * 9 8 7 12 12 C 1.52997 * 109.47212 * 180.02562 * 11 9 8 13 13 C 1.50697 * 109.47466 * 180.02562 * 12 11 9 14 14 H 1.08006 * 119.99920 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00428 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99996 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 120.00227 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46792 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46980 * 119.99883 * 17 15 13 20 20 H 1.48498 * 109.46996 * 239.99688 * 17 15 13 21 21 C 1.52994 * 109.47409 * 300.00933 * 5 3 2 22 22 C 1.50701 * 109.47248 * 64.99390 * 21 5 3 23 23 C 1.38651 * 120.79312 * 269.72055 * 22 21 5 24 24 C 1.38205 * 119.16235 * 179.80201 * 23 22 21 25 25 N 1.31867 * 120.76450 * 0.48571 * 24 23 22 26 26 C 1.31869 * 121.72667 * 359.74221 * 25 24 23 27 27 C 1.38209 * 120.76478 * 0.02579 * 26 25 24 28 28 H 1.08997 * 109.46946 * 59.99136 * 1 2 3 29 29 H 1.08997 * 109.46892 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46517 * 299.99579 * 1 2 3 31 31 H 1.09002 * 109.47153 * 175.00218 * 7 5 3 32 32 H 1.09001 * 109.46832 * 55.00409 * 7 5 3 33 33 H 0.96996 * 119.99606 * 0.02562 * 8 7 5 34 34 H 1.09001 * 109.47380 * 300.00190 * 11 9 8 35 35 H 1.09002 * 109.47060 * 60.00278 * 11 9 8 36 36 H 1.09001 * 109.47289 * 299.99918 * 12 11 9 37 37 H 1.09002 * 109.47153 * 60.00002 * 12 11 9 38 38 H 0.96993 * 120.00405 * 179.97438 * 16 15 13 39 39 H 1.09001 * 109.47698 * 184.99747 * 21 5 3 40 40 H 1.09009 * 109.47010 * 304.99752 * 21 5 3 41 41 H 1.07999 * 120.41504 * 0.02562 * 23 22 21 42 42 H 1.07997 * 119.61841 * 180.20868 * 24 23 22 43 43 H 1.08000 * 119.62326 * 180.02562 * 26 25 24 44 44 H 1.08003 * 120.41943 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9565 0.7806 -0.8893 7 6 4.0002 2.7420 0.0011 8 7 3.5794 3.3762 -1.2507 9 6 3.8549 4.6765 -1.4732 10 8 4.4517 5.3216 -0.6374 11 6 3.4225 5.3287 -2.7611 12 6 3.8562 6.7959 -2.7605 13 6 3.4233 7.4483 -4.0481 14 1 2.8922 6.8737 -4.7927 15 6 3.7060 8.7784 -4.2762 16 7 4.3531 9.4779 -3.3698 17 14 3.1699 9.5868 -5.8727 18 1 2.4639 8.5914 -6.7187 19 1 2.2555 10.7177 -5.5721 20 1 4.3636 10.0941 -6.5957 21 6 4.1130 0.5814 1.2500 22 6 3.7908 -0.8896 1.1897 23 6 2.6118 -1.3806 1.7294 24 6 2.3484 -2.7351 1.6517 25 7 3.2071 -3.5577 1.0816 26 6 4.3400 -3.1267 0.5621 27 6 4.6691 -1.7848 0.5984 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 5.0850 2.8001 0.0911 32 1 3.5377 3.2573 0.8429 33 1 3.1018 2.8603 -1.9190 34 1 3.8857 4.8136 -3.6027 35 1 2.3378 5.2702 -2.8517 36 1 3.3933 7.3113 -1.9190 37 1 4.9409 6.8541 -2.6701 38 1 4.5523 10.4135 -3.5304 39 1 5.1938 0.7149 1.2963 40 1 3.6546 1.0176 2.1376 41 1 1.9065 -0.7126 2.2012 42 1 1.4308 -3.1251 2.0666 43 1 5.0185 -3.8303 0.1029 44 1 5.5986 -1.4380 0.1716 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117669710.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:05 Heat of formation + Delta-G solvation = -125.477451 kcal Electronic energy + Delta-G solvation = -26388.401918 eV Core-core repulsion = 22497.470603 eV Total energy + Delta-G solvation = -3890.931315 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.99070 -40.79766 -40.53954 -37.88765 -36.90593 -35.57787 -35.09343 -33.11245 -32.14416 -31.98403 -28.85160 -28.29098 -26.96509 -25.01427 -24.28745 -23.56779 -22.76669 -21.58646 -20.91102 -18.86021 -18.82355 -18.07001 -17.81785 -17.38966 -17.28150 -16.90306 -16.74904 -16.45198 -16.36631 -16.27859 -15.20534 -14.88252 -14.82371 -14.48991 -14.45283 -14.25116 -14.15918 -13.95789 -13.51679 -13.43160 -13.23802 -13.10684 -12.96032 -12.84062 -12.51473 -12.43847 -12.20397 -11.93417 -11.77867 -11.64431 -11.43606 -11.28977 -10.78607 -10.58221 -10.36958 -10.30398 -10.07179 -9.88168 -8.18440 -6.32398 0.35003 0.39635 1.12629 1.41451 1.43141 1.56409 1.68395 1.74309 2.21832 2.44047 2.99678 3.14323 3.25132 3.63828 3.72696 3.84066 3.93835 3.99503 4.09631 4.11903 4.29104 4.33113 4.33467 4.37177 4.48675 4.50697 4.56290 4.66325 4.74425 4.76808 4.83373 4.96328 5.02770 5.07216 5.16968 5.36825 5.42577 5.50314 5.50994 5.63199 5.85221 5.92184 6.17654 6.54327 6.69685 6.85959 7.17542 7.32839 7.37817 8.94478 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026478 B = 0.002251 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.216648 B =12434.586956 C =12822.686164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.343 6.343 3 C 0.457 3.543 4 O -0.528 6.528 5 C -0.072 4.072 6 H 0.142 0.858 7 C 0.132 3.868 8 N -0.715 5.715 9 C 0.515 3.485 10 O -0.587 6.587 11 C -0.120 4.120 12 C 0.043 3.957 13 C -0.543 4.543 14 H 0.074 0.926 15 C -0.008 4.008 16 N -0.937 5.937 17 Si 0.975 3.025 18 H -0.254 1.254 19 H -0.281 1.281 20 H -0.278 1.278 21 C -0.067 4.067 22 C -0.049 4.049 23 C -0.137 4.137 24 C 0.083 3.917 25 N -0.516 5.516 26 C 0.080 3.920 27 C -0.161 4.161 28 H 0.056 0.944 29 H 0.126 0.874 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.055 0.945 33 H 0.409 0.591 34 H 0.106 0.894 35 H 0.095 0.905 36 H -0.020 1.020 37 H -0.014 1.014 38 H 0.263 0.737 39 H 0.124 0.876 40 H 0.087 0.913 41 H 0.133 0.867 42 H 0.165 0.835 43 H 0.170 0.830 44 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.679 -30.480 8.851 31.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.259 6.259 3 C 0.301 3.699 4 O -0.417 6.417 5 C -0.092 4.092 6 H 0.159 0.841 7 C 0.008 3.992 8 N -0.368 5.368 9 C 0.303 3.697 10 O -0.466 6.466 11 C -0.160 4.160 12 C 0.005 3.995 13 C -0.580 4.580 14 H 0.092 0.908 15 C -0.205 4.205 16 N -0.577 5.577 17 Si 0.799 3.201 18 H -0.177 1.177 19 H -0.207 1.207 20 H -0.204 1.204 21 C -0.105 4.105 22 C -0.057 4.057 23 C -0.157 4.157 24 C -0.073 4.073 25 N -0.226 5.226 26 C -0.077 4.077 27 C -0.180 4.180 28 H 0.074 0.926 29 H 0.144 0.856 30 H 0.080 0.920 31 H 0.113 0.887 32 H 0.073 0.927 33 H 0.245 0.755 34 H 0.125 0.875 35 H 0.113 0.887 36 H -0.002 1.002 37 H 0.005 0.995 38 H 0.072 0.928 39 H 0.142 0.858 40 H 0.106 0.894 41 H 0.150 0.850 42 H 0.182 0.818 43 H 0.187 0.813 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -3.630 -30.492 9.464 32.133 hybrid contribution -0.564 1.720 -0.649 1.923 sum -4.194 -28.772 8.814 30.383 Atomic orbital electron populations 1.23462 0.75672 1.05164 1.02353 1.86696 1.24074 1.31841 1.83253 1.24022 0.92466 0.81501 0.71938 1.90780 1.67723 1.37435 1.45717 1.21413 0.87033 0.96527 1.04185 0.84060 1.21279 1.00892 0.90017 0.87003 1.45772 1.59721 1.10452 1.20840 1.21185 0.77690 0.81807 0.89003 1.90648 1.43083 1.64393 1.48516 1.21626 1.02802 0.97278 0.94315 1.18684 0.94746 0.90719 0.95350 1.21738 1.36829 0.96120 1.03359 0.90776 1.26151 0.95092 0.98364 1.00932 1.70182 1.41795 1.08997 1.36736 0.85259 0.78023 0.78347 0.78515 1.17739 1.20680 1.20392 1.20562 1.04606 0.89732 0.95563 1.20183 0.94249 0.95508 0.95745 1.22013 0.97060 0.96708 0.99873 1.22931 0.98521 0.90140 0.95684 1.67649 1.04275 1.40741 1.09896 1.23083 0.93606 0.94967 0.96001 1.22293 1.01445 0.94012 1.00269 0.92563 0.85609 0.91979 0.88731 0.92705 0.75521 0.87549 0.88689 1.00186 0.99508 0.92825 0.85828 0.89434 0.84952 0.81752 0.81331 0.82362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 113.37 1.20 1.51 16 2 O -0.34 -5.02 6.49 -51.40 -0.33 -5.36 16 3 C 0.46 8.33 6.84 71.24 0.49 8.82 16 4 O -0.53 -14.05 15.04 21.95 0.33 -13.72 16 5 C -0.07 -0.97 2.36 -11.54 -0.03 -0.99 16 6 H 0.14 1.30 8.14 -2.38 -0.02 1.28 16 7 C 0.13 2.85 4.62 86.38 0.40 3.25 16 8 N -0.72 -19.62 4.81 -463.06 -2.23 -21.85 16 9 C 0.51 20.40 7.83 87.66 0.69 21.08 16 10 O -0.59 -29.01 15.98 -3.03 -0.05 -29.06 16 11 C -0.12 -5.02 5.64 29.85 0.17 -4.86 16 12 C 0.04 2.43 4.26 29.85 0.13 2.56 16 13 C -0.54 -31.51 9.11 25.60 0.23 -31.27 16 14 H 0.07 3.94 7.74 -2.91 -0.02 3.92 16 15 C -0.01 -0.48 5.46 84.65 0.46 -0.01 16 16 N -0.94 -60.12 13.29 21.45 0.28 -59.84 16 17 Si 0.97 44.91 29.54 68.60 2.03 46.93 16 18 H -0.25 -10.82 7.11 99.48 0.71 -10.11 16 19 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 20 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 21 C -0.07 -0.62 4.87 29.85 0.15 -0.48 16 22 C -0.05 -0.52 4.56 -19.67 -0.09 -0.61 16 23 C -0.14 -1.61 7.05 22.36 0.16 -1.45 16 24 C 0.08 1.10 11.18 84.68 0.95 2.05 16 25 N -0.52 -8.46 10.36 -195.84 -2.03 -10.49 16 26 C 0.08 0.99 11.18 84.68 0.95 1.94 16 27 C -0.16 -1.55 9.82 22.36 0.22 -1.33 16 28 H 0.06 0.77 8.13 -2.39 -0.02 0.75 16 29 H 0.13 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.06 0.76 8.13 -2.39 -0.02 0.74 16 31 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.05 1.46 7.96 -2.39 -0.02 1.44 16 33 H 0.41 9.00 8.16 -92.71 -0.76 8.24 16 34 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 35 H 0.09 3.65 8.14 -2.39 -0.02 3.63 16 36 H -0.02 -1.32 8.10 -2.39 -0.02 -1.34 16 37 H -0.01 -0.86 8.10 -2.39 -0.02 -0.88 16 38 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 39 H 0.12 0.65 8.10 -2.39 -0.02 0.63 16 40 H 0.09 0.86 8.10 -2.38 -0.02 0.84 16 41 H 0.13 1.36 7.62 -2.91 -0.02 1.34 16 42 H 0.17 1.47 8.06 -2.91 -0.02 1.45 16 43 H 0.17 1.34 8.06 -2.91 -0.02 1.32 16 44 H 0.16 0.72 8.06 -2.91 -0.02 0.69 16 Total: -1.00 -85.93 375.50 4.31 -81.62 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: 0.25 Total: 11.56 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: 6.06 Total: 0.20 kcal Atomic # 7 Polarization: -88.21 SS G_CDS: -3.97 Total: -92.18 kcal Atomic # 8 Polarization: -48.08 SS G_CDS: -0.05 Total: -48.13 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -85.93 4.31 -81.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117669710.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.862 kcal (2) G-P(sol) polarization free energy of solvation -85.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds