Wall clock time and date at job start Tue Mar 31 2020 12:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34224 * 117.00077 * 2 1 4 4 O 1.20833 * 120.00103 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00302 * 180.02562 * 3 2 1 6 6 H 1.08995 * 109.47473 * 59.99636 * 5 3 2 7 7 C 1.53002 * 109.46941 * 299.99657 * 5 3 2 8 8 N 1.46507 * 109.47010 * 65.00040 * 7 5 3 9 9 C 1.34777 * 119.99799 * 180.02562 * 8 7 5 10 10 O 1.21281 * 120.00116 * 359.97438 * 9 8 7 11 11 C 1.50700 * 119.99916 * 180.02562 * 9 8 7 12 12 C 1.52998 * 109.47263 * 179.97438 * 11 9 8 13 13 C 1.50701 * 109.46930 * 180.02562 * 12 11 9 14 14 H 1.08001 * 120.00356 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99453 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99498 * 179.97438 * 15 13 12 17 17 Si 1.86791 * 120.00452 * 359.97438 * 15 13 12 18 18 H 1.48495 * 109.47531 * 90.00049 * 17 15 13 19 19 H 1.48503 * 109.47195 * 210.00523 * 17 15 13 20 20 H 1.48507 * 109.46987 * 330.00010 * 17 15 13 21 21 C 1.52999 * 109.47581 * 180.02562 * 5 3 2 22 22 C 1.50706 * 109.46799 * 294.99662 * 21 5 3 23 23 C 1.38646 * 120.79057 * 269.71957 * 22 21 5 24 24 C 1.38199 * 119.16528 * 179.79796 * 23 22 21 25 25 N 1.31875 * 120.76045 * 0.48260 * 24 23 22 26 26 C 1.31867 * 121.72978 * 359.74772 * 25 24 23 27 27 C 1.38211 * 120.76107 * 0.02562 * 26 25 24 28 28 H 1.09000 * 109.47070 * 300.00162 * 1 2 3 29 29 H 1.09001 * 109.46626 * 60.00180 * 1 2 3 30 30 H 1.09001 * 109.47153 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47713 * 184.99975 * 7 5 3 32 32 H 1.09005 * 109.47442 * 304.99998 * 7 5 3 33 33 H 0.97002 * 119.99983 * 359.97438 * 8 7 5 34 34 H 1.09005 * 109.46653 * 300.00022 * 11 9 8 35 35 H 1.09005 * 109.47055 * 59.99214 * 11 9 8 36 36 H 1.09004 * 109.46935 * 299.99373 * 12 11 9 37 37 H 1.08997 * 109.47353 * 59.99701 * 12 11 9 38 38 H 0.96999 * 120.00152 * 179.97438 * 16 15 13 39 39 H 1.08995 * 109.47184 * 54.98964 * 21 5 3 40 40 H 1.08998 * 109.47522 * 174.99955 * 21 5 3 41 41 H 1.08006 * 120.41698 * 0.02562 * 23 22 21 42 42 H 1.07996 * 119.62311 * 180.20968 * 24 23 22 43 43 H 1.07992 * 119.62121 * 180.02562 * 26 25 24 44 44 H 1.07997 * 120.41622 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9558 0.7809 -0.8907 7 6 4.1139 0.5811 1.2484 8 7 3.8007 -0.8489 1.1896 9 6 4.1874 -1.6651 2.1899 10 8 4.7951 -1.2159 3.1385 11 6 3.8658 -3.1361 2.1292 12 6 4.4132 -3.8299 3.3782 13 6 4.0921 -5.3010 3.3171 14 1 3.5513 -5.7011 2.4722 15 6 4.4879 -6.1360 4.3404 16 7 4.2072 -7.4198 4.2873 17 14 5.4226 -5.4439 5.8021 18 1 4.4597 -5.0232 6.8513 19 1 6.3273 -6.4865 6.3497 20 1 6.2242 -4.2719 5.3672 21 6 4.0002 2.7420 0.0002 22 6 3.5663 3.3948 -1.2870 23 6 4.3992 3.4015 -2.3954 24 6 3.9657 4.0060 -3.5600 25 7 2.7799 4.5798 -3.6211 26 6 1.9635 4.5967 -2.5857 27 6 2.3270 4.0081 -1.3892 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 5.1946 0.7147 1.2940 32 1 3.6561 1.0171 2.1364 33 1 3.3143 -1.2081 0.4310 34 1 2.7850 -3.2701 2.0829 35 1 4.3243 -3.5719 1.2414 36 1 5.4940 -3.6959 3.4239 37 1 3.9552 -3.3941 4.2661 38 1 4.4859 -8.0073 5.0070 39 1 3.5382 3.2571 0.8424 40 1 5.0850 2.8002 0.0893 41 1 5.3732 2.9368 -2.3502 42 1 4.6071 4.0125 -4.4288 43 1 0.9997 5.0759 -2.6736 44 1 1.6538 4.0249 -0.5448 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117669711.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:09 Heat of formation + Delta-G solvation = -96.691427 kcal Electronic energy + Delta-G solvation = -26431.955807 eV Core-core repulsion = 22542.272748 eV Total energy + Delta-G solvation = -3889.683059 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.30330 -40.20471 -39.25457 -37.19963 -36.08457 -34.11605 -33.48511 -31.78495 -31.45087 -31.07159 -28.23016 -27.27015 -25.69149 -24.04867 -23.75597 -22.49255 -21.18433 -20.71889 -19.65015 -18.20320 -17.50228 -17.42129 -17.03284 -16.56247 -16.18069 -15.90913 -15.82124 -15.57572 -15.22173 -14.45991 -14.37412 -14.09150 -13.97182 -13.61481 -13.34831 -13.23419 -13.10345 -12.85631 -12.68661 -12.56735 -12.37700 -12.12269 -11.88789 -11.51078 -11.42117 -11.09949 -10.97148 -10.75252 -10.17557 -10.05783 -9.88449 -9.79004 -9.70727 -9.36565 -9.27603 -9.17984 -8.96625 -8.51536 -6.03853 -4.02546 0.85406 0.92917 1.82497 2.31917 3.08592 3.26108 3.36994 3.43711 3.54269 3.55553 4.00907 4.19755 4.21886 4.36157 4.50028 4.53125 4.57960 4.70423 4.81177 4.84210 4.93164 4.93430 5.09512 5.26934 5.29004 5.31626 5.33167 5.38789 5.46414 5.56521 5.65315 5.71121 6.04283 6.07734 6.09581 6.15209 6.45486 6.51144 6.69051 7.35408 7.38616 7.42659 7.69867 7.72965 7.78774 8.48849 8.61804 8.99357 9.59215 11.08965 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025429 B = 0.002407 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.851250 B =11628.397035 C =12093.793111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.354 6.354 3 C 0.465 3.535 4 O -0.499 6.499 5 C -0.088 4.088 6 H 0.118 0.882 7 C 0.129 3.871 8 N -0.740 5.740 9 C 0.512 3.488 10 O -0.541 6.541 11 C -0.121 4.121 12 C 0.001 3.999 13 C -0.525 4.525 14 H 0.073 0.927 15 C 0.068 3.932 16 N -0.904 5.904 17 Si 0.878 3.122 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.261 1.261 21 C -0.065 4.065 22 C -0.052 4.052 23 C -0.168 4.168 24 C 0.089 3.911 25 N -0.488 5.488 26 C 0.086 3.914 27 C -0.140 4.140 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.405 0.595 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.023 0.977 37 H 0.018 0.982 38 H 0.263 0.737 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.135 0.865 42 H 0.153 0.847 43 H 0.152 0.848 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.087 23.453 -14.875 28.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.270 6.270 3 C 0.308 3.692 4 O -0.387 6.387 5 C -0.107 4.107 6 H 0.136 0.864 7 C 0.004 3.996 8 N -0.396 5.396 9 C 0.301 3.699 10 O -0.417 6.417 11 C -0.161 4.161 12 C -0.036 4.036 13 C -0.562 4.562 14 H 0.091 0.909 15 C -0.133 4.133 16 N -0.543 5.543 17 Si 0.705 3.295 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.185 1.185 21 C -0.103 4.103 22 C -0.060 4.060 23 C -0.188 4.188 24 C -0.068 4.068 25 N -0.197 5.197 26 C -0.070 4.070 27 C -0.159 4.159 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.123 0.877 31 H 0.103 0.897 32 H 0.090 0.910 33 H 0.240 0.760 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.042 0.958 37 H 0.037 0.963 38 H 0.073 0.927 39 H 0.111 0.889 40 H 0.116 0.884 41 H 0.153 0.847 42 H 0.171 0.829 43 H 0.170 0.830 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -4.122 24.286 -14.853 28.765 hybrid contribution 0.192 -0.318 1.113 1.174 sum -3.930 23.968 -13.739 27.905 Atomic orbital electron populations 1.23312 0.75687 1.04219 1.02394 1.86462 1.23914 1.33003 1.83582 1.23618 0.91744 0.81640 0.72197 1.90576 1.67311 1.35690 1.45127 1.21409 0.88354 0.98596 1.02366 0.86408 1.21169 1.01227 0.82026 0.95140 1.46209 1.60727 1.07275 1.25399 1.21540 0.77511 0.89850 0.81003 1.90658 1.40217 1.77687 1.33181 1.21659 1.02856 0.88276 1.03315 1.19371 0.96822 0.95463 0.91994 1.21115 1.37101 0.90638 1.07389 0.90923 1.24980 0.95457 0.94680 0.98187 1.69913 1.47190 1.03677 1.33475 0.86791 0.80564 0.79160 0.83003 1.20281 1.21467 1.18520 1.20489 1.02573 0.91432 0.95791 1.20170 0.94278 0.96366 0.95195 1.22099 1.01071 1.01648 0.93965 1.22712 0.92828 0.94009 0.97276 1.67642 1.04295 1.16486 1.31270 1.22818 0.98798 0.96596 0.88810 1.22580 0.96588 0.96445 1.00311 0.91741 0.91976 0.87667 0.89727 0.91015 0.75951 0.89571 0.89540 0.95826 0.96321 0.92727 0.88933 0.88366 0.84742 0.82926 0.83045 0.82692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.56 101.05 1.07 1.35 16 2 O -0.35 -3.33 8.56 -39.24 -0.34 -3.67 16 3 C 0.46 4.38 7.00 36.00 0.25 4.63 16 4 O -0.50 -5.26 11.39 -18.76 -0.21 -5.47 16 5 C -0.09 -0.65 2.36 -91.77 -0.22 -0.87 16 6 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 7 C 0.13 1.27 5.05 -4.04 -0.02 1.25 16 8 N -0.74 -9.02 5.06 -60.29 -0.31 -9.33 16 9 C 0.51 8.83 7.83 -10.99 -0.09 8.75 16 10 O -0.54 -11.45 15.98 5.56 0.09 -11.36 16 11 C -0.12 -2.27 5.64 -27.88 -0.16 -2.43 16 12 C 0.00 0.03 3.33 -27.88 -0.09 -0.06 16 13 C -0.52 -14.82 9.66 -34.44 -0.33 -15.15 16 14 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 15 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 16 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 17 Si 0.88 22.39 27.47 -169.99 -4.67 17.72 16 18 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 20 H -0.26 -6.60 6.54 56.52 0.37 -6.23 16 21 C -0.07 -0.43 4.63 -27.88 -0.13 -0.56 16 22 C -0.05 -0.41 4.87 -104.32 -0.51 -0.92 16 23 C -0.17 -1.21 9.82 -39.45 -0.39 -1.60 16 24 C 0.09 0.74 11.18 -17.55 -0.20 0.54 16 25 N -0.49 -5.02 10.36 -13.26 -0.14 -5.16 16 26 C 0.09 0.80 11.18 -17.55 -0.20 0.60 16 27 C -0.14 -1.25 8.06 -39.44 -0.32 -1.57 16 28 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 29 H 0.06 0.44 8.13 -51.93 -0.42 0.01 16 30 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.40 4.14 6.94 -40.82 -0.28 3.86 16 34 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 35 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 36 H 0.02 0.60 7.16 -51.93 -0.37 0.23 16 37 H 0.02 0.47 7.53 -51.93 -0.39 0.08 16 38 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 39 H 0.09 0.63 7.92 -51.93 -0.41 0.22 16 40 H 0.10 0.46 8.10 -51.93 -0.42 0.04 16 41 H 0.13 0.65 8.06 -52.48 -0.42 0.22 16 42 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 43 H 0.15 1.10 8.06 -52.49 -0.42 0.67 16 44 H 0.16 1.43 5.90 -52.49 -0.31 1.12 16 LS Contribution 369.32 15.07 5.57 5.57 Total: -1.00 -36.04 369.32 -7.08 -43.12 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -6.42 Total: -0.26 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -1.42 Total: -4.13 kcal Atomic # 7 Polarization: -41.85 SS G_CDS: 0.33 Total: -41.51 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.46 Total: -20.50 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.67 Total: 17.72 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.04 -7.08 -43.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117669711.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.576 kcal (2) G-P(sol) polarization free energy of solvation -36.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds