Wall clock time and date at job start Tue Mar 31 2020 12:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34224 * 117.00077 * 2 1 4 4 O 1.20833 * 120.00103 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00302 * 180.02562 * 3 2 1 6 6 H 1.08995 * 109.47473 * 59.99636 * 5 3 2 7 7 C 1.53002 * 109.46941 * 299.99657 * 5 3 2 8 8 N 1.46507 * 109.47010 * 65.00040 * 7 5 3 9 9 C 1.34777 * 119.99799 * 180.02562 * 8 7 5 10 10 O 1.21281 * 120.00116 * 359.97438 * 9 8 7 11 11 C 1.50700 * 119.99916 * 180.02562 * 9 8 7 12 12 C 1.52998 * 109.47263 * 179.97438 * 11 9 8 13 13 C 1.50701 * 109.46930 * 180.02562 * 12 11 9 14 14 H 1.08001 * 120.00356 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99453 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99498 * 179.97438 * 15 13 12 17 17 Si 1.86791 * 120.00452 * 359.97438 * 15 13 12 18 18 H 1.48495 * 109.47531 * 90.00049 * 17 15 13 19 19 H 1.48503 * 109.47195 * 210.00523 * 17 15 13 20 20 H 1.48507 * 109.46987 * 330.00010 * 17 15 13 21 21 C 1.52999 * 109.47581 * 180.02562 * 5 3 2 22 22 C 1.50706 * 109.46799 * 294.99662 * 21 5 3 23 23 C 1.38646 * 120.79057 * 269.71957 * 22 21 5 24 24 C 1.38199 * 119.16528 * 179.79796 * 23 22 21 25 25 N 1.31875 * 120.76045 * 0.48260 * 24 23 22 26 26 C 1.31867 * 121.72978 * 359.74772 * 25 24 23 27 27 C 1.38211 * 120.76107 * 0.02562 * 26 25 24 28 28 H 1.09000 * 109.47070 * 300.00162 * 1 2 3 29 29 H 1.09001 * 109.46626 * 60.00180 * 1 2 3 30 30 H 1.09001 * 109.47153 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47713 * 184.99975 * 7 5 3 32 32 H 1.09005 * 109.47442 * 304.99998 * 7 5 3 33 33 H 0.97002 * 119.99983 * 359.97438 * 8 7 5 34 34 H 1.09005 * 109.46653 * 300.00022 * 11 9 8 35 35 H 1.09005 * 109.47055 * 59.99214 * 11 9 8 36 36 H 1.09004 * 109.46935 * 299.99373 * 12 11 9 37 37 H 1.08997 * 109.47353 * 59.99701 * 12 11 9 38 38 H 0.96999 * 120.00152 * 179.97438 * 16 15 13 39 39 H 1.08995 * 109.47184 * 54.98964 * 21 5 3 40 40 H 1.08998 * 109.47522 * 174.99955 * 21 5 3 41 41 H 1.08006 * 120.41698 * 0.02562 * 23 22 21 42 42 H 1.07996 * 119.62311 * 180.20968 * 24 23 22 43 43 H 1.07992 * 119.62121 * 180.02562 * 26 25 24 44 44 H 1.07997 * 120.41622 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9558 0.7809 -0.8907 7 6 4.1139 0.5811 1.2484 8 7 3.8007 -0.8489 1.1896 9 6 4.1874 -1.6651 2.1899 10 8 4.7951 -1.2159 3.1385 11 6 3.8658 -3.1361 2.1292 12 6 4.4132 -3.8299 3.3782 13 6 4.0921 -5.3010 3.3171 14 1 3.5513 -5.7011 2.4722 15 6 4.4879 -6.1360 4.3404 16 7 4.2072 -7.4198 4.2873 17 14 5.4226 -5.4439 5.8021 18 1 4.4597 -5.0232 6.8513 19 1 6.3273 -6.4865 6.3497 20 1 6.2242 -4.2719 5.3672 21 6 4.0002 2.7420 0.0002 22 6 3.5663 3.3948 -1.2870 23 6 4.3992 3.4015 -2.3954 24 6 3.9657 4.0060 -3.5600 25 7 2.7799 4.5798 -3.6211 26 6 1.9635 4.5967 -2.5857 27 6 2.3270 4.0081 -1.3892 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 5.1946 0.7147 1.2940 32 1 3.6561 1.0171 2.1364 33 1 3.3143 -1.2081 0.4310 34 1 2.7850 -3.2701 2.0829 35 1 4.3243 -3.5719 1.2414 36 1 5.4940 -3.6959 3.4239 37 1 3.9552 -3.3941 4.2661 38 1 4.4859 -8.0073 5.0070 39 1 3.5382 3.2571 0.8424 40 1 5.0850 2.8002 0.0893 41 1 5.3732 2.9368 -2.3502 42 1 4.6071 4.0125 -4.4288 43 1 0.9997 5.0759 -2.6736 44 1 1.6538 4.0249 -0.5448 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117669711.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:08 Heat of formation + Delta-G solvation = -120.720069 kcal Electronic energy + Delta-G solvation = -26432.997767 eV Core-core repulsion = 22542.272748 eV Total energy + Delta-G solvation = -3890.725019 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.00120 -40.84691 -40.53830 -37.89887 -36.96493 -35.51096 -34.96886 -33.34632 -32.30433 -32.04010 -28.84160 -28.59492 -26.93414 -24.92224 -24.35762 -23.33776 -22.71802 -21.52046 -20.91513 -19.22751 -18.84088 -18.18837 -18.02127 -17.44971 -17.17676 -16.80944 -16.69222 -16.49901 -16.31535 -16.18490 -15.25706 -15.01295 -14.89532 -14.67953 -14.59264 -14.37492 -14.03564 -13.83367 -13.63478 -13.50221 -13.36297 -13.22440 -12.88922 -12.82031 -12.57128 -12.07024 -12.05432 -11.93530 -11.77890 -11.73100 -11.47226 -11.36534 -10.79272 -10.75754 -10.43752 -10.33937 -10.05922 -9.97762 -8.29087 -6.31679 0.26107 0.31188 1.11733 1.35354 1.37445 1.52188 1.68632 1.74138 2.23619 2.37186 2.90552 3.06823 3.35674 3.55382 3.64309 3.77887 3.94611 3.97872 4.10733 4.13169 4.25784 4.30016 4.33974 4.35604 4.45686 4.48603 4.56099 4.68360 4.73651 4.76002 4.79669 4.93248 5.00786 5.05377 5.12778 5.36082 5.42620 5.49001 5.49713 5.52725 5.64450 5.86832 6.26390 6.58651 6.71932 6.75240 7.08255 7.33597 7.34687 8.86542 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025429 B = 0.002407 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.851250 B =11628.397035 C =12093.793111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.363 6.363 3 C 0.457 3.543 4 O -0.513 6.513 5 C -0.074 4.074 6 H 0.140 0.860 7 C 0.129 3.871 8 N -0.718 5.718 9 C 0.518 3.482 10 O -0.584 6.584 11 C -0.118 4.118 12 C 0.005 3.995 13 C -0.527 4.527 14 H 0.050 0.950 15 C 0.011 3.989 16 N -0.945 5.945 17 Si 0.939 3.061 18 H -0.270 1.270 19 H -0.280 1.280 20 H -0.259 1.259 21 C -0.061 4.061 22 C -0.056 4.056 23 C -0.162 4.162 24 C 0.076 3.924 25 N -0.516 5.516 26 C 0.070 3.930 27 C -0.149 4.149 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.122 0.878 31 H 0.098 0.902 32 H 0.061 0.939 33 H 0.417 0.583 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.012 0.988 37 H 0.007 0.993 38 H 0.266 0.734 39 H 0.087 0.913 40 H 0.125 0.875 41 H 0.165 0.835 42 H 0.174 0.826 43 H 0.160 0.840 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.981 24.588 -15.518 29.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.279 6.279 3 C 0.301 3.699 4 O -0.402 6.402 5 C -0.093 4.093 6 H 0.157 0.843 7 C 0.005 3.995 8 N -0.373 5.373 9 C 0.306 3.694 10 O -0.464 6.464 11 C -0.157 4.157 12 C -0.033 4.033 13 C -0.565 4.565 14 H 0.068 0.932 15 C -0.186 4.186 16 N -0.585 5.585 17 Si 0.763 3.237 18 H -0.196 1.196 19 H -0.205 1.205 20 H -0.183 1.183 21 C -0.099 4.099 22 C -0.064 4.064 23 C -0.181 4.181 24 C -0.080 4.080 25 N -0.226 5.226 26 C -0.086 4.086 27 C -0.169 4.169 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.140 0.860 31 H 0.116 0.884 32 H 0.080 0.920 33 H 0.255 0.745 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.030 0.970 37 H 0.026 0.974 38 H 0.075 0.925 39 H 0.105 0.895 40 H 0.143 0.857 41 H 0.183 0.817 42 H 0.191 0.809 43 H 0.177 0.823 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.048 25.443 -15.546 29.971 hybrid contribution -0.229 -0.666 1.212 1.402 sum -3.277 24.777 -14.334 28.811 Atomic orbital electron populations 1.23459 0.74951 1.05339 1.02311 1.86443 1.24785 1.33141 1.83504 1.24079 0.92597 0.81445 0.71805 1.90587 1.67815 1.36123 1.45693 1.21380 0.86826 0.99197 1.01927 0.84281 1.21297 1.02086 0.80158 0.95948 1.45947 1.59104 1.08050 1.24161 1.21079 0.77379 0.89502 0.81403 1.90647 1.42535 1.78182 1.35071 1.21488 1.03575 0.89523 1.01146 1.19227 0.96177 0.93489 0.94450 1.21453 1.35982 0.92707 1.06379 0.93167 1.25824 0.96644 0.94978 1.01165 1.70029 1.48820 1.04979 1.34717 0.85822 0.79479 0.78589 0.79780 1.19553 1.20542 1.18274 1.20519 1.04125 0.90334 0.94879 1.20354 0.93915 0.96128 0.96017 1.22397 1.01986 1.00751 0.92996 1.23180 0.92530 0.93679 0.98639 1.67644 1.05424 1.17659 1.31890 1.23011 0.99353 0.97185 0.89014 1.22580 0.97259 0.97110 0.99918 0.92280 0.91656 0.86002 0.88422 0.92041 0.74511 0.88210 0.87845 0.96984 0.97413 0.92460 0.89472 0.85695 0.81735 0.80860 0.82281 0.83461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 113.37 1.20 1.65 16 2 O -0.36 -6.16 8.56 -51.35 -0.44 -6.60 16 3 C 0.46 7.77 7.00 71.23 0.50 8.27 16 4 O -0.51 -10.32 11.39 21.94 0.25 -10.07 16 5 C -0.07 -0.88 2.36 -11.54 -0.03 -0.91 16 6 H 0.14 1.13 8.14 -2.39 -0.02 1.11 16 7 C 0.13 2.17 5.05 86.38 0.44 2.61 16 8 N -0.72 -15.56 5.06 -463.04 -2.34 -17.91 16 9 C 0.52 16.86 7.83 87.66 0.69 17.55 16 10 O -0.58 -23.94 15.98 -3.03 -0.05 -23.99 16 11 C -0.12 -4.22 5.64 29.85 0.17 -4.05 16 12 C 0.00 0.22 3.33 29.85 0.10 0.32 16 13 C -0.53 -29.89 9.66 25.60 0.25 -29.64 16 14 H 0.05 2.99 7.99 -2.91 -0.02 2.97 16 15 C 0.01 0.67 5.47 84.65 0.46 1.13 16 16 N -0.94 -58.66 13.96 21.45 0.30 -58.36 16 17 Si 0.94 46.13 27.47 68.60 1.88 48.01 16 18 H -0.27 -12.89 7.11 99.48 0.71 -12.19 16 19 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 20 H -0.26 -12.52 6.54 99.48 0.65 -11.87 16 21 C -0.06 -0.62 4.63 29.85 0.14 -0.48 16 22 C -0.06 -0.76 4.87 -19.67 -0.10 -0.86 16 23 C -0.16 -1.86 9.82 22.36 0.22 -1.64 16 24 C 0.08 1.12 11.18 84.68 0.95 2.07 16 25 N -0.52 -10.25 10.36 -195.85 -2.03 -12.28 16 26 C 0.07 1.29 11.18 84.68 0.95 2.23 16 27 C -0.15 -2.56 8.06 22.36 0.18 -2.38 16 28 H 0.06 0.88 8.13 -2.39 -0.02 0.86 16 29 H 0.06 0.86 8.13 -2.39 -0.02 0.84 16 30 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.42 7.23 6.94 -92.71 -0.64 6.58 16 34 H 0.10 3.29 8.14 -2.38 -0.02 3.27 16 35 H 0.10 3.34 8.14 -2.38 -0.02 3.32 16 36 H 0.01 0.60 7.16 -2.38 -0.02 0.58 16 37 H 0.01 0.38 7.53 -2.39 -0.02 0.36 16 38 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 39 H 0.09 1.02 7.92 -2.39 -0.02 1.00 16 40 H 0.12 0.64 8.10 -2.39 -0.02 0.62 16 41 H 0.17 0.84 8.06 -2.91 -0.02 0.81 16 42 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 43 H 0.16 2.38 8.06 -2.91 -0.02 2.35 16 44 H 0.15 2.71 5.90 -2.91 -0.02 2.69 16 Total: -1.00 -78.32 369.32 3.99 -74.33 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: 0.31 Total: 10.99 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: 6.11 Total: -4.13 kcal Atomic # 7 Polarization: -84.48 SS G_CDS: -4.07 Total: -88.55 kcal Atomic # 8 Polarization: -40.41 SS G_CDS: -0.24 Total: -40.65 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 1.88 Total: 48.01 kcal Total: -78.32 3.99 -74.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117669711.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.388 kcal (2) G-P(sol) polarization free energy of solvation -78.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds