Wall clock time and date at job start Tue Mar 31 2020 12:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86804 * 119.99743 * 2 1 4 4 H 1.48499 * 109.47128 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46846 * 299.99191 * 3 2 1 6 6 H 1.48502 * 109.47288 * 59.99551 * 3 2 1 7 7 C 1.40019 * 120.00349 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00306 * 169.80358 * 7 2 1 9 9 C 1.41557 * 119.99736 * 349.80775 * 7 2 1 10 10 C 1.41184 * 120.99592 * 333.75797 * 9 7 2 11 11 C 1.36552 * 119.14621 * 180.02562 * 10 9 7 12 12 N 1.32094 * 121.27123 * 359.97438 * 11 10 9 13 13 C 1.32529 * 122.21404 * 359.69917 * 12 11 10 14 14 N 1.39083 * 119.66014 * 180.31607 * 13 12 11 15 15 C 1.46494 * 120.00190 * 180.27023 * 14 13 12 16 16 C 1.53006 * 109.47252 * 180.02562 * 15 14 13 17 17 N 1.46494 * 109.47252 * 179.97438 * 16 15 14 18 18 C 1.34777 * 119.99980 * 179.97438 * 17 16 15 19 19 O 1.21591 * 120.00129 * 5.23754 * 18 17 16 20 20 N 1.34778 * 120.00146 * 185.23259 * 18 17 16 21 21 C 1.47149 * 120.98179 * 184.71373 * 20 18 17 22 22 C 1.53713 * 108.16116 * 129.43769 * 21 20 18 23 23 O 1.42965 * 109.14942 * 52.53453 * 22 21 20 24 24 C 1.42958 * 114.16752 * 297.29115 * 23 22 21 25 25 C 1.47150 * 120.98290 * 5.00282 * 20 18 17 26 26 C 1.38743 * 120.68449 * 0.59849 * 13 12 11 27 27 H 0.96998 * 120.00120 * 0.02562 * 1 2 3 28 28 H 1.07994 * 120.42462 * 359.97438 * 10 9 7 29 29 H 1.08008 * 119.36809 * 179.97438 * 11 10 9 30 30 H 0.97005 * 119.99384 * 0.27785 * 14 13 12 31 31 H 1.08996 * 109.47266 * 300.00098 * 15 14 13 32 32 H 1.09001 * 109.47087 * 60.00940 * 15 14 13 33 33 H 1.09003 * 109.47115 * 300.00744 * 16 15 14 34 34 H 1.09007 * 109.46909 * 60.00256 * 16 15 14 35 35 H 0.96999 * 119.99930 * 0.02562 * 17 16 15 36 36 H 1.08997 * 109.68204 * 249.21139 * 21 20 18 37 37 H 1.08997 * 109.68360 * 9.76880 * 21 20 18 38 38 H 1.09007 * 109.65521 * 292.57087 * 22 21 20 39 39 H 1.08996 * 109.48849 * 172.40140 * 22 21 20 40 40 H 1.08998 * 109.51284 * 302.65747 * 24 23 22 41 41 H 1.08996 * 109.55394 * 182.52818 * 24 23 22 42 42 H 1.09008 * 109.68125 * 350.23086 * 25 20 18 43 43 H 1.08998 * 109.68639 * 110.78338 * 25 20 18 44 44 H 1.08000 * 120.66505 * 179.70090 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7014 1.3465 0.0006 5 1 1.8827 2.3964 -1.2126 6 1 1.8826 2.3966 1.2124 7 6 2.0076 -1.2126 0.0005 8 1 3.0748 -1.2200 -0.1650 9 6 1.3166 -2.4287 0.2180 10 6 0.1110 -2.4587 0.9522 11 6 -0.5239 -3.6530 1.1396 12 7 -0.0320 -4.7758 0.6476 13 6 1.0918 -4.8070 -0.0543 14 7 1.5582 -6.0185 -0.5533 15 6 2.8026 -6.0625 -1.3251 16 6 3.0866 -7.5038 -1.7531 17 7 4.3307 -7.5477 -2.5254 18 6 4.7826 -8.7217 -3.0089 19 8 4.1114 -9.7282 -2.8870 20 7 5.9785 -8.7801 -3.6278 21 6 6.4472 -10.0265 -4.2540 22 6 6.8951 -9.7031 -5.6884 23 8 7.8276 -8.6199 -5.6556 24 6 7.2869 -7.3973 -5.1491 25 6 6.8567 -7.6012 -3.6919 26 6 1.8108 -3.6444 -0.2917 27 1 -0.4850 0.8400 -0.0004 28 1 -0.3031 -1.5490 1.3609 29 1 -1.4462 -3.6801 1.7011 30 1 1.0594 -6.8344 -0.3903 31 1 2.7037 -5.4339 -2.2100 32 1 3.6248 -5.6972 -0.7098 33 1 3.1853 -8.1328 -0.8683 34 1 2.2643 -7.8688 -2.3685 35 1 4.8296 -6.7318 -2.6881 36 1 7.2861 -10.4295 -3.6866 37 1 5.6356 -10.7537 -4.2768 38 1 6.0296 -9.4204 -6.2878 39 1 7.3710 -10.5800 -6.1272 40 1 6.4229 -7.1062 -5.7464 41 1 8.0443 -6.6150 -5.1991 42 1 6.3163 -6.7214 -3.3422 43 1 7.7360 -7.7641 -3.0688 44 1 2.7290 -3.6709 -0.8596 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157109101.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:58 Heat of formation + Delta-G solvation = -27.911692 kcal Electronic energy + Delta-G solvation = -25886.220677 eV Core-core repulsion = 22031.812882 eV Total energy + Delta-G solvation = -3854.407795 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.79690 -38.88178 -38.48401 -36.21996 -35.08173 -34.46275 -33.62866 -31.79686 -30.64133 -29.70519 -28.11587 -26.70990 -25.92049 -24.57953 -23.21905 -22.34828 -21.13722 -20.84600 -20.01415 -18.70387 -17.74469 -16.93327 -16.37961 -16.31455 -15.96325 -15.63644 -15.46898 -15.20682 -15.01673 -14.90187 -14.51810 -14.18696 -13.98754 -13.71932 -13.31983 -13.05256 -12.88794 -12.72330 -12.38886 -12.24087 -11.88222 -11.75658 -11.54640 -11.38988 -11.19336 -11.17285 -10.89202 -10.63422 -10.36897 -10.28808 -9.83400 -9.51870 -9.38023 -9.01513 -8.81700 -7.97811 -7.94965 -6.82046 -6.51966 -4.60543 2.18007 2.75679 2.91983 3.01001 3.02931 3.06756 3.31183 3.34818 3.39627 3.85765 4.16107 4.26817 4.51345 4.55713 4.61644 4.70372 4.79471 4.82270 4.99582 5.13622 5.15925 5.27097 5.30642 5.47290 5.48837 5.73898 5.84688 5.99306 5.99957 6.08272 6.22997 6.53893 6.61889 6.68787 6.85752 6.88192 6.98290 7.25777 7.51489 7.60023 7.79527 8.00002 8.05444 8.29426 8.40796 8.64730 8.80413 8.86326 9.72589 10.12147 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015366 B = 0.002381 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.758803 B =11757.691355 C =13406.397903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.075 3.925 3 Si 0.913 3.087 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.271 1.271 7 C -0.455 4.455 8 H 0.078 0.922 9 C 0.154 3.846 10 C -0.240 4.240 11 C 0.114 3.886 12 N -0.620 5.620 13 C 0.396 3.604 14 N -0.742 5.742 15 C 0.133 3.867 16 C 0.128 3.872 17 N -0.740 5.740 18 C 0.712 3.288 19 O -0.586 6.586 20 N -0.635 5.635 21 C 0.096 3.904 22 C 0.046 3.954 23 O -0.380 6.380 24 C 0.047 3.953 25 C 0.076 3.924 26 C -0.332 4.332 27 H 0.281 0.719 28 H 0.128 0.872 29 H 0.119 0.881 30 H 0.392 0.608 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.397 0.603 36 H 0.074 0.926 37 H 0.103 0.897 38 H 0.057 0.943 39 H 0.107 0.893 40 H 0.058 0.942 41 H 0.108 0.892 42 H 0.089 0.911 43 H 0.080 0.920 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.735 -11.285 -9.190 20.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.143 4.143 3 Si 0.737 3.263 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.197 1.197 7 C -0.487 4.487 8 H 0.097 0.903 9 C 0.146 3.854 10 C -0.264 4.264 11 C -0.035 4.035 12 N -0.343 5.343 13 C 0.166 3.834 14 N -0.380 5.380 15 C 0.007 3.993 16 C 0.004 3.996 17 N -0.398 5.398 18 C 0.413 3.587 19 O -0.464 6.464 20 N -0.375 5.375 21 C -0.027 4.027 22 C -0.031 4.031 23 O -0.298 6.298 24 C -0.031 4.031 25 C -0.048 4.048 26 C -0.359 4.359 27 H 0.092 0.908 28 H 0.146 0.854 29 H 0.137 0.863 30 H 0.226 0.774 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.234 0.766 36 H 0.093 0.907 37 H 0.121 0.879 38 H 0.075 0.925 39 H 0.125 0.875 40 H 0.076 0.924 41 H 0.126 0.874 42 H 0.107 0.893 43 H 0.099 0.901 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 12.892 -12.579 -9.058 20.162 hybrid contribution 0.558 1.848 -0.093 1.932 sum 13.450 -10.731 -9.151 19.489 Atomic orbital electron populations 1.69780 1.07559 1.29116 1.35175 1.25963 0.94850 1.01425 0.92081 0.86184 0.80765 0.80679 0.78622 1.18415 1.19900 1.19655 1.19601 0.95783 0.90167 1.43120 0.90341 1.17638 0.90529 0.91636 0.85611 1.21901 1.00301 0.98088 1.06150 1.21399 0.97419 0.88091 0.96594 1.66722 1.15402 1.31267 1.20952 1.17864 0.90133 0.84565 0.90871 1.43792 1.25570 1.07444 1.61174 1.21091 0.88071 0.94329 0.95838 1.21320 0.85437 0.97248 0.95644 1.45055 1.27299 1.08562 1.58844 1.15713 0.80845 0.83858 0.78281 1.90932 1.57710 1.34300 1.63424 1.47261 1.17531 1.12610 1.60072 1.22248 1.00877 0.86370 0.93239 1.23124 0.93572 0.90791 0.95648 1.87972 1.37668 1.19507 1.84623 1.22995 0.99977 0.87396 0.92737 1.22369 0.95226 0.88690 0.98528 1.21148 1.05644 0.92856 1.16218 0.90828 0.85412 0.86309 0.77363 0.92165 0.92233 0.91002 0.90851 0.76607 0.90732 0.87880 0.92473 0.87496 0.92371 0.87357 0.89267 0.90126 0.88537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.91 10.71 55.55 0.60 -19.32 16 2 C 0.08 1.83 5.31 -17.35 -0.09 1.74 16 3 Si 0.91 18.00 29.57 -169.99 -5.03 12.97 16 4 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 5 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 6 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 7 C -0.46 -11.74 9.13 -37.65 -0.34 -12.08 16 8 H 0.08 1.93 7.87 -52.49 -0.41 1.52 16 9 C 0.15 4.07 5.60 -106.55 -0.60 3.48 16 10 C -0.24 -6.23 8.73 -39.07 -0.34 -6.57 16 11 C 0.11 2.78 11.10 -18.05 -0.20 2.58 16 12 N -0.62 -15.06 10.37 -12.82 -0.13 -15.20 16 13 C 0.40 9.09 7.65 -154.98 -1.19 7.91 16 14 N -0.74 -13.32 5.73 -60.48 -0.35 -13.67 16 15 C 0.13 1.87 5.00 -4.04 -0.02 1.85 16 16 C 0.13 1.57 5.79 -4.04 -0.02 1.55 16 17 N -0.74 -7.98 5.46 -65.22 -0.36 -8.33 16 18 C 0.71 8.90 8.31 -86.92 -0.72 8.17 16 19 O -0.59 -9.56 15.84 5.29 0.08 -9.48 16 20 N -0.64 -6.04 3.01 -177.75 -0.54 -6.57 16 21 C 0.10 0.79 6.65 -3.32 -0.02 0.77 16 22 C 0.05 0.32 7.00 37.53 0.26 0.58 16 23 O -0.38 -3.09 10.74 -35.23 -0.38 -3.47 16 24 C 0.05 0.29 6.99 37.31 0.26 0.55 16 25 C 0.08 0.50 6.64 -3.53 -0.02 0.48 16 26 C -0.33 -8.02 9.12 -38.44 -0.35 -8.37 16 27 H 0.28 6.39 8.29 -40.82 -0.34 6.05 16 28 H 0.13 3.38 6.12 -52.49 -0.32 3.06 16 29 H 0.12 2.54 8.06 -52.48 -0.42 2.12 16 30 H 0.39 6.57 8.60 -40.82 -0.35 6.22 16 31 H 0.06 0.86 7.93 -51.93 -0.41 0.45 16 32 H 0.06 0.83 7.93 -51.93 -0.41 0.42 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.07 0.96 8.14 -51.92 -0.42 0.54 16 35 H 0.40 3.31 6.01 -40.82 -0.25 3.06 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.10 0.95 7.12 -51.93 -0.37 0.58 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.09 0.46 5.65 -51.92 -0.29 0.17 16 43 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.10 2.14 6.71 -52.49 -0.35 1.79 16 LS Contribution 361.19 15.07 5.44 5.44 Total: -1.00 -32.52 361.19 -10.16 -42.68 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -6.11 Total: 12.31 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: -3.40 Total: 2.62 kcal Atomic # 7 Polarization: -62.31 SS G_CDS: -0.78 Total: -63.08 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: -0.29 Total: -12.95 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.97 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.52 -10.16 -42.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157109101.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.772 kcal (2) G-P(sol) polarization free energy of solvation -32.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds