Wall clock time and date at job start Tue Mar 31 2020 12:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86804 * 119.99743 * 2 1 4 4 H 1.48499 * 109.47128 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46846 * 299.99191 * 3 2 1 6 6 H 1.48502 * 109.47288 * 59.99551 * 3 2 1 7 7 C 1.40019 * 120.00349 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00306 * 169.80358 * 7 2 1 9 9 C 1.41557 * 119.99736 * 349.80775 * 7 2 1 10 10 C 1.41184 * 120.99592 * 333.75797 * 9 7 2 11 11 C 1.36552 * 119.14621 * 180.02562 * 10 9 7 12 12 N 1.32094 * 121.27123 * 359.97438 * 11 10 9 13 13 C 1.32529 * 122.21404 * 359.69917 * 12 11 10 14 14 N 1.39083 * 119.66014 * 180.31607 * 13 12 11 15 15 C 1.46494 * 120.00190 * 180.27023 * 14 13 12 16 16 C 1.53006 * 109.47252 * 180.02562 * 15 14 13 17 17 N 1.46494 * 109.47252 * 179.97438 * 16 15 14 18 18 C 1.34777 * 119.99980 * 179.97438 * 17 16 15 19 19 O 1.21591 * 120.00129 * 5.23754 * 18 17 16 20 20 N 1.34778 * 120.00146 * 185.23259 * 18 17 16 21 21 C 1.47149 * 120.98179 * 184.71373 * 20 18 17 22 22 C 1.53713 * 108.16116 * 129.43769 * 21 20 18 23 23 O 1.42965 * 109.14942 * 52.53453 * 22 21 20 24 24 C 1.42958 * 114.16752 * 297.29115 * 23 22 21 25 25 C 1.47150 * 120.98290 * 5.00282 * 20 18 17 26 26 C 1.38743 * 120.68449 * 0.59849 * 13 12 11 27 27 H 0.96998 * 120.00120 * 0.02562 * 1 2 3 28 28 H 1.07994 * 120.42462 * 359.97438 * 10 9 7 29 29 H 1.08008 * 119.36809 * 179.97438 * 11 10 9 30 30 H 0.97005 * 119.99384 * 0.27785 * 14 13 12 31 31 H 1.08996 * 109.47266 * 300.00098 * 15 14 13 32 32 H 1.09001 * 109.47087 * 60.00940 * 15 14 13 33 33 H 1.09003 * 109.47115 * 300.00744 * 16 15 14 34 34 H 1.09007 * 109.46909 * 60.00256 * 16 15 14 35 35 H 0.96999 * 119.99930 * 0.02562 * 17 16 15 36 36 H 1.08997 * 109.68204 * 249.21139 * 21 20 18 37 37 H 1.08997 * 109.68360 * 9.76880 * 21 20 18 38 38 H 1.09007 * 109.65521 * 292.57087 * 22 21 20 39 39 H 1.08996 * 109.48849 * 172.40140 * 22 21 20 40 40 H 1.08998 * 109.51284 * 302.65747 * 24 23 22 41 41 H 1.08996 * 109.55394 * 182.52818 * 24 23 22 42 42 H 1.09008 * 109.68125 * 350.23086 * 25 20 18 43 43 H 1.08998 * 109.68639 * 110.78338 * 25 20 18 44 44 H 1.08000 * 120.66505 * 179.70090 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7014 1.3465 0.0006 5 1 1.8827 2.3964 -1.2126 6 1 1.8826 2.3966 1.2124 7 6 2.0076 -1.2126 0.0005 8 1 3.0748 -1.2200 -0.1650 9 6 1.3166 -2.4287 0.2180 10 6 0.1110 -2.4587 0.9522 11 6 -0.5239 -3.6530 1.1396 12 7 -0.0320 -4.7758 0.6476 13 6 1.0918 -4.8070 -0.0543 14 7 1.5582 -6.0185 -0.5533 15 6 2.8026 -6.0625 -1.3251 16 6 3.0866 -7.5038 -1.7531 17 7 4.3307 -7.5477 -2.5254 18 6 4.7826 -8.7217 -3.0089 19 8 4.1114 -9.7282 -2.8870 20 7 5.9785 -8.7801 -3.6278 21 6 6.4472 -10.0265 -4.2540 22 6 6.8951 -9.7031 -5.6884 23 8 7.8276 -8.6199 -5.6556 24 6 7.2869 -7.3973 -5.1491 25 6 6.8567 -7.6012 -3.6919 26 6 1.8108 -3.6444 -0.2917 27 1 -0.4850 0.8400 -0.0004 28 1 -0.3031 -1.5490 1.3609 29 1 -1.4462 -3.6801 1.7011 30 1 1.0594 -6.8344 -0.3903 31 1 2.7037 -5.4339 -2.2100 32 1 3.6248 -5.6972 -0.7098 33 1 3.1853 -8.1328 -0.8683 34 1 2.2643 -7.8688 -2.3685 35 1 4.8296 -6.7318 -2.6881 36 1 7.2861 -10.4295 -3.6866 37 1 5.6356 -10.7537 -4.2768 38 1 6.0296 -9.4204 -6.2878 39 1 7.3710 -10.5800 -6.1272 40 1 6.4229 -7.1062 -5.7464 41 1 8.0443 -6.6150 -5.1991 42 1 6.3163 -6.7214 -3.3422 43 1 7.7360 -7.7641 -3.0688 44 1 2.7290 -3.6709 -0.8596 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157109101.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:57 Heat of formation + Delta-G solvation = -50.726261 kcal Electronic energy + Delta-G solvation = -25887.209991 eV Core-core repulsion = 22031.812882 eV Total energy + Delta-G solvation = -3855.397109 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.62443 -40.34107 -39.54424 -37.52621 -36.06020 -35.86623 -35.09622 -32.54252 -32.40472 -31.05424 -29.15587 -27.94261 -27.80773 -25.21125 -24.39799 -23.30582 -22.78562 -22.47601 -20.90301 -19.57226 -19.43631 -17.88773 -17.60377 -17.16225 -17.06159 -16.83814 -16.56481 -16.34255 -16.06258 -15.91483 -15.80304 -15.51589 -15.20109 -14.86358 -14.69790 -14.62052 -14.23122 -14.14138 -13.46868 -13.23226 -12.94693 -12.91431 -12.82507 -12.77883 -12.58656 -12.37937 -11.95646 -11.85402 -11.71330 -11.37997 -11.28865 -11.19554 -10.69075 -10.33685 -9.88974 -9.84701 -9.54562 -8.63737 -8.25390 -6.54648 0.97650 1.19678 1.32947 1.41664 1.56812 1.60618 1.96415 2.21111 2.38371 2.85074 2.85459 2.97790 3.66228 3.72388 3.82196 3.94124 4.05297 4.07765 4.09534 4.24719 4.25619 4.38806 4.44648 4.64356 4.74143 4.77387 4.84078 4.86414 4.89151 4.91943 5.01269 5.06914 5.14346 5.28987 5.31614 5.35874 5.62484 5.73917 5.92897 6.09285 6.13789 6.36354 6.56925 6.76529 6.88530 6.90445 7.02413 7.37078 7.87305 8.32330 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015366 B = 0.002381 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.758803 B =11757.691355 C =13406.397903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.033 3.967 3 Si 0.990 3.010 4 H -0.254 1.254 5 H -0.266 1.266 6 H -0.265 1.265 7 C -0.484 4.484 8 H 0.082 0.918 9 C 0.125 3.875 10 C -0.266 4.266 11 C 0.113 3.887 12 N -0.633 5.633 13 C 0.396 3.604 14 N -0.732 5.732 15 C 0.138 3.862 16 C 0.143 3.857 17 N -0.730 5.730 18 C 0.706 3.294 19 O -0.630 6.630 20 N -0.633 5.633 21 C 0.093 3.907 22 C 0.052 3.948 23 O -0.393 6.393 24 C 0.045 3.955 25 C 0.072 3.928 26 C -0.347 4.347 27 H 0.289 0.711 28 H 0.115 0.885 29 H 0.143 0.857 30 H 0.399 0.601 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.411 0.589 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.052 0.948 39 H 0.128 0.872 40 H 0.056 0.944 41 H 0.130 0.870 42 H 0.104 0.896 43 H 0.090 0.910 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.540 -10.674 -9.942 21.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.182 4.182 3 Si 0.810 3.190 4 H -0.178 1.178 5 H -0.191 1.191 6 H -0.190 1.190 7 C -0.515 4.515 8 H 0.100 0.900 9 C 0.117 3.883 10 C -0.291 4.291 11 C -0.036 4.036 12 N -0.357 5.357 13 C 0.164 3.836 14 N -0.369 5.369 15 C 0.012 3.988 16 C 0.018 3.982 17 N -0.389 5.389 18 C 0.408 3.592 19 O -0.511 6.511 20 N -0.371 5.371 21 C -0.030 4.030 22 C -0.026 4.026 23 O -0.312 6.312 24 C -0.032 4.032 25 C -0.050 4.050 26 C -0.374 4.374 27 H 0.100 0.900 28 H 0.133 0.867 29 H 0.160 0.840 30 H 0.234 0.766 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.250 0.750 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.071 0.929 39 H 0.146 0.854 40 H 0.074 0.926 41 H 0.148 0.852 42 H 0.122 0.878 43 H 0.108 0.892 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 14.752 -11.986 -9.844 21.405 hybrid contribution 0.005 1.576 0.109 1.580 sum 14.757 -10.410 -9.735 20.516 Atomic orbital electron populations 1.69842 1.09100 1.30620 1.35067 1.26883 0.95633 1.04774 0.90957 0.85039 0.79392 0.75660 0.78885 1.17769 1.19087 1.19005 1.19892 0.96160 0.91038 1.44395 0.89959 1.18060 0.91144 0.92951 0.86168 1.21875 1.01213 0.98259 1.07751 1.21752 0.97970 0.87725 0.96172 1.66857 1.16124 1.31049 1.21704 1.18123 0.89521 0.85948 0.90026 1.43867 1.26506 1.06115 1.60448 1.21177 0.86558 0.95538 0.95498 1.21031 0.85933 0.95709 0.95519 1.44853 1.26829 1.08856 1.58328 1.15892 0.81446 0.83490 0.78406 1.90900 1.59208 1.35797 1.65209 1.47367 1.16799 1.13949 1.59009 1.22356 1.00553 0.85796 0.94330 1.23154 0.93527 0.91390 0.94517 1.87958 1.38311 1.20183 1.84740 1.23138 1.00638 0.87328 0.92105 1.22599 0.95156 0.88034 0.99254 1.21301 1.06526 0.92712 1.16854 0.89981 0.86686 0.83992 0.76554 0.91861 0.91465 0.91342 0.91584 0.75028 0.89840 0.89321 0.92924 0.85406 0.92569 0.85176 0.87826 0.89167 0.87030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.67 10.71 21.84 0.23 -41.44 16 2 C 0.03 1.62 5.31 85.29 0.45 2.07 16 3 Si 0.99 36.25 29.57 68.60 2.03 38.28 16 4 H -0.25 -8.97 7.11 99.48 0.71 -8.26 16 5 H -0.27 -9.36 7.11 99.48 0.71 -8.65 16 6 H -0.27 -9.39 7.11 99.48 0.71 -8.68 16 7 C -0.48 -25.13 9.13 23.52 0.21 -24.92 16 8 H 0.08 4.05 7.87 -2.91 -0.02 4.02 16 9 C 0.12 6.70 5.60 -21.12 -0.12 6.58 16 10 C -0.27 -14.12 8.73 22.60 0.20 -13.93 16 11 C 0.11 5.55 11.10 84.26 0.94 6.49 16 12 N -0.63 -30.59 10.37 -194.47 -2.02 -32.61 16 13 C 0.40 17.97 7.65 132.90 1.02 18.99 16 14 N -0.73 -25.48 5.73 -345.25 -1.98 -27.46 16 15 C 0.14 3.65 5.00 86.38 0.43 4.08 16 16 C 0.14 3.34 5.79 86.38 0.50 3.84 16 17 N -0.73 -14.67 5.46 -478.52 -2.61 -17.28 16 18 C 0.71 17.08 8.31 179.05 1.49 18.56 16 19 O -0.63 -20.61 15.84 -4.00 -0.06 -20.67 16 20 N -0.63 -11.23 3.01 -834.52 -2.52 -13.74 16 21 C 0.09 1.44 6.65 86.50 0.58 2.02 16 22 C 0.05 0.63 7.00 72.22 0.51 1.14 16 23 O -0.39 -5.63 10.74 -148.98 -1.60 -7.23 16 24 C 0.05 0.46 6.99 72.08 0.50 0.97 16 25 C 0.07 0.79 6.64 86.36 0.57 1.37 16 26 C -0.35 -16.75 9.12 23.01 0.21 -16.54 16 27 H 0.29 13.18 8.29 -92.71 -0.77 12.41 16 28 H 0.12 6.29 6.12 -2.91 -0.02 6.27 16 29 H 0.14 6.06 8.06 -2.91 -0.02 6.03 16 30 H 0.40 12.92 8.60 -92.70 -0.80 12.12 16 31 H 0.06 1.69 7.93 -2.39 -0.02 1.67 16 32 H 0.07 1.74 7.93 -2.39 -0.02 1.72 16 33 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 35 H 0.41 5.94 6.01 -92.71 -0.56 5.39 16 36 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.09 1.65 7.12 -2.39 -0.02 1.64 16 38 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 39 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.10 0.81 5.65 -2.38 -0.01 0.79 16 43 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.11 4.87 6.71 -2.91 -0.02 4.85 16 Total: -1.00 -70.49 361.19 -1.34 -71.84 By element: Atomic # 1 Polarization: 39.88 SS G_CDS: -0.31 Total: 39.57 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 7.49 Total: 10.72 kcal Atomic # 7 Polarization: -123.63 SS G_CDS: -8.89 Total: -132.52 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -1.66 Total: -27.90 kcal Atomic # 14 Polarization: 36.25 SS G_CDS: 2.03 Total: 38.28 kcal Total: -70.49 -1.34 -71.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157109101.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.111 kcal (2) G-P(sol) polarization free energy of solvation -70.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds