Wall clock time and date at job start Tue Mar 31 2020 12:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34238 * 116.99667 * 2 1 4 4 O 1.20826 * 120.00121 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99785 * 179.97438 * 3 2 1 6 6 C 1.52996 * 109.46975 * 180.02562 * 5 3 2 7 7 C 1.52996 * 109.46999 * 182.26967 * 6 5 3 8 8 H 1.09005 * 109.50613 * 305.93058 * 7 6 5 9 9 C 1.53099 * 109.54271 * 66.03973 * 7 6 5 10 10 O 1.43018 * 109.25538 * 176.80632 * 9 7 6 11 11 C 1.43021 * 113.73757 * 301.32775 * 10 9 7 12 12 C 1.53091 * 109.25656 * 58.67691 * 11 10 9 13 13 N 1.47018 * 109.25982 * 303.14564 * 12 11 10 14 14 C 1.39075 * 111.00398 * 182.39454 * 13 12 11 15 15 C 1.38746 * 119.65763 * 81.40078 * 14 13 12 16 16 C 1.40779 * 118.66446 * 179.77994 * 15 14 13 17 17 C 1.41562 * 120.98651 * 180.21919 * 16 15 14 18 18 H 1.08003 * 119.99502 * 206.19124 * 17 16 15 19 19 C 1.40021 * 120.00069 * 26.18896 * 17 16 15 20 20 N 1.30744 * 120.00057 * 11.09687 * 19 17 16 21 21 Si 1.86805 * 119.99683 * 191.09155 * 19 17 16 22 22 H 1.48499 * 109.47036 * 94.98993 * 21 19 17 23 23 H 1.48502 * 109.47052 * 214.98756 * 21 19 17 24 24 H 1.48501 * 109.47083 * 334.99064 * 21 19 17 25 25 C 1.41180 * 118.02104 * 0.48755 * 16 15 14 26 26 C 1.36566 * 119.13966 * 359.75505 * 25 16 15 27 27 N 1.32087 * 121.26951 * 359.97438 * 26 25 16 28 28 H 1.09001 * 109.47868 * 300.00359 * 1 2 3 29 29 H 1.09001 * 109.47193 * 60.00403 * 1 2 3 30 30 H 1.08998 * 109.47257 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46447 * 60.00001 * 5 3 2 32 32 H 1.08993 * 109.47039 * 300.00494 * 5 3 2 33 33 H 1.08998 * 109.47007 * 62.26938 * 6 5 3 34 34 H 1.09005 * 109.47209 * 302.26916 * 6 5 3 35 35 H 1.09000 * 109.50577 * 56.87814 * 9 7 6 36 36 H 1.08997 * 109.50826 * 296.73679 * 9 7 6 37 37 H 1.09001 * 109.50209 * 178.60708 * 11 10 9 38 38 H 1.08995 * 109.51154 * 298.73515 * 11 10 9 39 39 H 1.09001 * 109.51179 * 63.08019 * 12 11 10 40 40 H 1.09004 * 109.50745 * 183.17292 * 12 11 10 41 41 H 1.08003 * 120.66318 * 0.02562 * 15 14 13 42 42 H 0.97003 * 119.99914 * 179.97438 * 20 19 17 43 43 H 1.07993 * 120.43183 * 179.77749 * 25 16 15 44 44 H 1.08004 * 119.36021 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.0000 2.7422 0.0011 7 6 5.5268 2.8226 -0.0554 8 1 5.9527 2.2302 0.7544 9 6 6.0188 2.2796 -1.3997 10 8 7.4394 2.4263 -1.4761 11 6 7.8867 3.7782 -1.3429 12 6 7.4136 4.3363 0.0019 13 7 5.9502 4.2234 0.0860 14 6 5.4755 4.7701 1.2734 15 6 5.2973 6.1424 1.3745 16 6 4.8113 6.6729 2.5846 17 6 4.6068 8.0650 2.7400 18 1 4.6507 8.5108 3.7227 19 6 4.3476 8.8640 1.6196 20 7 4.0794 8.3071 0.4675 21 14 4.3848 10.7255 1.7713 22 1 5.7259 11.2274 1.3779 23 1 3.3543 11.3154 0.8795 24 1 4.1039 11.1133 3.1769 25 6 4.5394 5.7759 3.6403 26 6 4.7508 4.4403 3.4492 27 7 5.2028 3.9754 2.2984 28 1 -0.3635 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.9563 0.7807 -0.8892 32 1 3.9556 0.7810 0.8907 33 1 3.6441 3.2259 0.9107 34 1 3.5772 3.2464 -0.8679 35 1 5.5512 2.8377 -2.2108 36 1 5.7568 1.2250 -1.4841 37 1 8.9754 3.8073 -1.3863 38 1 7.4734 4.3798 -2.1523 39 1 7.8696 3.7680 0.8126 40 1 7.7037 5.3838 0.0836 41 1 5.5232 6.7901 0.5403 42 1 3.8995 8.8606 -0.3085 43 1 4.1687 6.1411 4.5866 44 1 4.5444 3.7509 4.2546 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158960634.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:44 Heat of formation + Delta-G solvation = -91.500665 kcal Electronic energy + Delta-G solvation = -27683.444658 eV Core-core repulsion = 23793.986687 eV Total energy + Delta-G solvation = -3889.457971 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.44934 -39.83197 -38.05041 -36.55110 -35.41623 -34.00884 -33.68636 -30.63484 -30.07233 -29.27368 -27.73598 -26.14799 -25.84981 -24.98518 -22.26301 -21.57908 -21.17546 -20.37124 -19.54611 -17.84428 -17.29234 -16.67211 -16.49891 -16.18982 -15.86025 -15.46451 -14.90290 -14.71000 -14.44837 -14.33055 -14.18043 -13.98329 -13.52734 -13.29497 -12.86787 -12.74088 -12.61069 -12.35493 -12.21180 -11.87669 -11.55698 -11.41056 -11.23613 -11.11192 -11.00881 -10.81142 -10.78378 -10.64733 -10.36419 -10.25920 -10.21520 -9.96942 -9.53356 -9.38381 -8.60247 -8.00979 -7.96868 -7.12709 -6.79111 -4.61618 2.33006 2.65597 2.75778 2.81681 3.02658 3.06252 3.20331 3.85788 4.01183 4.23275 4.59837 4.82150 5.04286 5.07225 5.11645 5.12987 5.24655 5.32363 5.38213 5.41524 5.49288 5.57712 5.63030 5.68631 5.77478 5.80494 5.87943 6.05517 6.13413 6.20645 6.43010 6.49743 6.61530 6.75618 6.83668 6.92190 7.11097 7.17678 7.28298 7.43343 7.53788 7.62290 7.85717 7.92660 8.22873 8.57047 8.74811 8.75106 9.51559 10.10137 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010679 B = 0.004315 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.224919 B = 6487.620998 C = 7894.228412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.366 6.366 3 C 0.458 3.542 4 O -0.498 6.498 5 C -0.108 4.108 6 C -0.097 4.097 7 C 0.066 3.934 8 H 0.066 0.934 9 C 0.063 3.937 10 O -0.388 6.388 11 C 0.065 3.935 12 C 0.028 3.972 13 N -0.469 5.469 14 C 0.276 3.724 15 C -0.189 4.189 16 C 0.132 3.868 17 C -0.454 4.454 18 H 0.081 0.919 19 C 0.075 3.925 20 N -0.782 5.782 21 Si 0.913 3.087 22 H -0.268 1.268 23 H -0.276 1.276 24 H -0.261 1.261 25 C -0.275 4.275 26 C 0.111 3.889 27 N -0.598 5.598 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.094 0.906 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.059 0.941 39 H 0.043 0.957 40 H 0.088 0.912 41 H 0.134 0.866 42 H 0.283 0.717 43 H 0.099 0.901 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.573 -11.060 -4.418 11.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.283 6.283 3 C 0.301 3.699 4 O -0.384 6.384 5 C -0.146 4.146 6 C -0.135 4.135 7 C -0.042 4.042 8 H 0.084 0.916 9 C -0.014 4.014 10 O -0.307 6.307 11 C -0.012 4.012 12 C -0.100 4.100 13 N -0.191 5.191 14 C 0.053 3.947 15 C -0.214 4.214 16 C 0.123 3.877 17 C -0.485 4.485 18 H 0.099 0.901 19 C -0.145 4.145 20 N -0.407 5.407 21 Si 0.737 3.263 22 H -0.193 1.193 23 H -0.201 1.201 24 H -0.185 1.185 25 C -0.299 4.299 26 C -0.043 4.043 27 N -0.318 5.318 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.116 0.884 31 H 0.119 0.881 32 H 0.125 0.875 33 H 0.113 0.887 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.078 0.922 39 H 0.062 0.938 40 H 0.106 0.894 41 H 0.151 0.849 42 H 0.094 0.906 43 H 0.117 0.883 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.351 -11.499 -5.213 12.631 hybrid contribution -0.450 1.673 0.887 1.946 sum -0.100 -9.827 -4.326 10.737 Atomic orbital electron populations 1.23213 0.76797 1.03292 1.02582 1.86506 1.23162 1.34025 1.84593 1.23963 0.92438 0.81132 0.72416 1.90722 1.67148 1.36221 1.44285 1.21444 0.86870 1.00908 1.05406 1.21379 0.93987 0.92623 1.05491 1.21971 0.95424 0.89720 0.97117 0.91594 1.22874 0.81112 1.00910 0.96516 1.87924 1.22047 1.26998 1.93724 1.22682 0.99261 0.82982 0.96275 1.22769 0.87447 1.02276 0.97461 1.60062 1.09854 1.16806 1.32335 1.19286 0.97689 0.90804 0.86949 1.21806 1.06279 0.92529 1.00753 1.17761 0.86184 0.93301 0.90422 1.19618 1.42509 0.91909 0.94505 0.90122 1.25968 0.92286 1.01591 0.94625 1.69769 1.31842 1.38073 1.01057 0.86215 0.78888 0.81626 0.79537 1.19273 1.20094 1.18517 1.21617 1.12923 0.94171 1.01180 1.21310 0.96445 0.93285 0.93299 1.67213 1.23388 1.40349 1.00841 0.91957 0.92036 0.88374 0.88133 0.87498 0.88714 0.91099 0.92432 0.88803 0.88684 0.92246 0.93828 0.89409 0.84863 0.90594 0.88251 0.86528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.56 101.05 1.07 1.42 16 2 O -0.37 -4.72 10.57 -39.28 -0.41 -5.13 16 3 C 0.46 6.94 7.96 36.01 0.29 7.23 16 4 O -0.50 -9.46 15.72 -18.75 -0.29 -9.76 16 5 C -0.11 -1.45 5.64 -27.88 -0.16 -1.60 16 6 C -0.10 -1.69 3.81 -26.74 -0.10 -1.79 16 7 C 0.07 1.14 1.62 -67.60 -0.11 1.03 16 8 H 0.07 1.20 7.70 -51.93 -0.40 0.80 16 9 C 0.06 0.90 5.99 37.21 0.22 1.12 16 10 O -0.39 -5.91 10.83 -35.23 -0.38 -6.29 16 11 C 0.07 0.93 7.01 37.20 0.26 1.19 16 12 C 0.03 0.48 5.56 -3.71 -0.02 0.46 16 13 N -0.47 -9.31 4.52 -165.40 -0.75 -10.06 16 14 C 0.28 6.40 4.83 -154.98 -0.75 5.65 16 15 C -0.19 -4.85 8.53 -38.43 -0.33 -5.18 16 16 C 0.13 3.46 5.60 -106.55 -0.60 2.86 16 17 C -0.45 -11.76 9.13 -37.65 -0.34 -12.10 16 18 H 0.08 2.00 7.87 -52.48 -0.41 1.59 16 19 C 0.07 1.83 5.29 -17.35 -0.09 1.74 16 20 N -0.78 -19.94 10.76 55.55 0.60 -19.34 16 21 Si 0.91 18.25 29.57 -169.99 -5.03 13.23 16 22 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 23 H -0.28 -5.44 7.11 56.52 0.40 -5.03 16 24 H -0.26 -5.17 7.11 56.52 0.40 -4.76 16 25 C -0.28 -6.65 9.85 -39.07 -0.38 -7.03 16 26 C 0.11 2.51 11.10 -18.05 -0.20 2.31 16 27 N -0.60 -13.68 7.53 -12.82 -0.10 -13.78 16 28 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 29 H 0.06 0.62 8.13 -51.93 -0.42 0.19 16 30 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.10 1.04 6.58 -51.93 -0.34 0.70 16 32 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.09 2.05 5.99 -51.93 -0.31 1.74 16 34 H 0.07 1.32 8.04 -51.93 -0.42 0.90 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.09 1.07 6.72 -51.93 -0.35 0.72 16 37 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.09 1.53 8.02 -51.93 -0.42 1.11 16 41 H 0.13 3.56 6.16 -52.48 -0.32 3.24 16 42 H 0.28 6.58 8.29 -40.82 -0.34 6.24 16 43 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 44 H 0.12 2.28 8.06 -52.48 -0.42 1.86 16 LS Contribution 359.90 15.07 5.42 5.42 Total: -1.00 -30.43 359.90 -8.52 -38.95 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -6.33 Total: 9.47 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -1.25 Total: -2.71 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: -0.25 Total: -43.18 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -1.09 Total: -21.18 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.23 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.43 -8.52 -38.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158960634.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.551 kcal (2) G-P(sol) polarization free energy of solvation -30.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds