Wall clock time and date at job start Tue Mar 31 2020 12:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34238 * 116.99667 * 2 1 4 4 O 1.20826 * 120.00121 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99785 * 179.97438 * 3 2 1 6 6 C 1.52996 * 109.46975 * 180.02562 * 5 3 2 7 7 C 1.52996 * 109.46999 * 182.26967 * 6 5 3 8 8 H 1.09005 * 109.50613 * 305.93058 * 7 6 5 9 9 C 1.53099 * 109.54271 * 66.03973 * 7 6 5 10 10 O 1.43018 * 109.25538 * 176.80632 * 9 7 6 11 11 C 1.43021 * 113.73757 * 301.32775 * 10 9 7 12 12 C 1.53091 * 109.25656 * 58.67691 * 11 10 9 13 13 N 1.47018 * 109.25982 * 303.14564 * 12 11 10 14 14 C 1.39075 * 111.00398 * 182.39454 * 13 12 11 15 15 C 1.38746 * 119.65763 * 81.40078 * 14 13 12 16 16 C 1.40779 * 118.66446 * 179.77994 * 15 14 13 17 17 C 1.41562 * 120.98651 * 180.21919 * 16 15 14 18 18 H 1.08003 * 119.99502 * 206.19124 * 17 16 15 19 19 C 1.40021 * 120.00069 * 26.18896 * 17 16 15 20 20 N 1.30744 * 120.00057 * 11.09687 * 19 17 16 21 21 Si 1.86805 * 119.99683 * 191.09155 * 19 17 16 22 22 H 1.48499 * 109.47036 * 94.98993 * 21 19 17 23 23 H 1.48502 * 109.47052 * 214.98756 * 21 19 17 24 24 H 1.48501 * 109.47083 * 334.99064 * 21 19 17 25 25 C 1.41180 * 118.02104 * 0.48755 * 16 15 14 26 26 C 1.36566 * 119.13966 * 359.75505 * 25 16 15 27 27 N 1.32087 * 121.26951 * 359.97438 * 26 25 16 28 28 H 1.09001 * 109.47868 * 300.00359 * 1 2 3 29 29 H 1.09001 * 109.47193 * 60.00403 * 1 2 3 30 30 H 1.08998 * 109.47257 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46447 * 60.00001 * 5 3 2 32 32 H 1.08993 * 109.47039 * 300.00494 * 5 3 2 33 33 H 1.08998 * 109.47007 * 62.26938 * 6 5 3 34 34 H 1.09005 * 109.47209 * 302.26916 * 6 5 3 35 35 H 1.09000 * 109.50577 * 56.87814 * 9 7 6 36 36 H 1.08997 * 109.50826 * 296.73679 * 9 7 6 37 37 H 1.09001 * 109.50209 * 178.60708 * 11 10 9 38 38 H 1.08995 * 109.51154 * 298.73515 * 11 10 9 39 39 H 1.09001 * 109.51179 * 63.08019 * 12 11 10 40 40 H 1.09004 * 109.50745 * 183.17292 * 12 11 10 41 41 H 1.08003 * 120.66318 * 0.02562 * 15 14 13 42 42 H 0.97003 * 119.99914 * 179.97438 * 20 19 17 43 43 H 1.07993 * 120.43183 * 179.77749 * 25 16 15 44 44 H 1.08004 * 119.36021 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.0000 2.7422 0.0011 7 6 5.5268 2.8226 -0.0554 8 1 5.9527 2.2302 0.7544 9 6 6.0188 2.2796 -1.3997 10 8 7.4394 2.4263 -1.4761 11 6 7.8867 3.7782 -1.3429 12 6 7.4136 4.3363 0.0019 13 7 5.9502 4.2234 0.0860 14 6 5.4755 4.7701 1.2734 15 6 5.2973 6.1424 1.3745 16 6 4.8113 6.6729 2.5846 17 6 4.6068 8.0650 2.7400 18 1 4.6507 8.5108 3.7227 19 6 4.3476 8.8640 1.6196 20 7 4.0794 8.3071 0.4675 21 14 4.3848 10.7255 1.7713 22 1 5.7259 11.2274 1.3779 23 1 3.3543 11.3154 0.8795 24 1 4.1039 11.1133 3.1769 25 6 4.5394 5.7759 3.6403 26 6 4.7508 4.4403 3.4492 27 7 5.2028 3.9754 2.2984 28 1 -0.3635 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.9563 0.7807 -0.8892 32 1 3.9556 0.7810 0.8907 33 1 3.6441 3.2259 0.9107 34 1 3.5772 3.2464 -0.8679 35 1 5.5512 2.8377 -2.2108 36 1 5.7568 1.2250 -1.4841 37 1 8.9754 3.8073 -1.3863 38 1 7.4734 4.3798 -2.1523 39 1 7.8696 3.7680 0.8126 40 1 7.7037 5.3838 0.0836 41 1 5.5232 6.7901 0.5403 42 1 3.8995 8.8606 -0.3085 43 1 4.1687 6.1411 4.5866 44 1 4.5444 3.7509 4.2546 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158960634.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:43 Heat of formation + Delta-G solvation = -110.417691 kcal Electronic energy + Delta-G solvation = -27684.264961 eV Core-core repulsion = 23793.986687 eV Total energy + Delta-G solvation = -3890.278274 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.71908 -41.24811 -39.65160 -37.70287 -36.88598 -35.79212 -35.09714 -32.49059 -31.36213 -30.88755 -28.76406 -27.95167 -27.34284 -26.22160 -23.74887 -23.21912 -22.81964 -21.60225 -21.03273 -19.46486 -18.61358 -17.90237 -17.79498 -17.62480 -17.08751 -17.06725 -16.41740 -16.21134 -16.00393 -15.83798 -15.65365 -15.29169 -14.83405 -14.55409 -14.43266 -14.29822 -14.28146 -13.69558 -13.32664 -13.16972 -13.08526 -12.92267 -12.74477 -12.72156 -12.38322 -12.21463 -12.12998 -11.91889 -11.87983 -11.77744 -11.61093 -11.41554 -11.28066 -10.82501 -10.20103 -9.89986 -9.83909 -8.87972 -8.64768 -6.58907 0.81695 0.98923 1.15225 1.36707 1.50781 1.52741 1.72278 2.17020 2.68232 2.76418 2.92212 3.63389 3.68850 3.79845 3.83332 4.03490 4.10556 4.15886 4.22413 4.28967 4.29337 4.32665 4.36589 4.49742 4.53684 4.68002 4.69950 4.72003 4.76973 4.87312 4.91043 4.93251 5.03920 5.19524 5.24223 5.28336 5.32634 5.39160 5.56451 5.78868 5.97881 5.99269 6.15375 6.32828 6.70054 6.71580 6.81571 6.84523 7.64976 8.26865 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010679 B = 0.004315 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.224919 B = 6487.620998 C = 7894.228412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.359 6.359 3 C 0.461 3.539 4 O -0.547 6.547 5 C -0.099 4.099 6 C -0.088 4.088 7 C 0.069 3.931 8 H 0.059 0.941 9 C 0.067 3.933 10 O -0.390 6.390 11 C 0.072 3.928 12 C 0.028 3.972 13 N -0.484 5.484 14 C 0.285 3.715 15 C -0.219 4.219 16 C 0.103 3.897 17 C -0.488 4.488 18 H 0.082 0.918 19 C 0.035 3.965 20 N -0.816 5.816 21 Si 0.989 3.011 22 H -0.259 1.259 23 H -0.268 1.268 24 H -0.256 1.256 25 C -0.293 4.293 26 C 0.109 3.891 27 N -0.594 5.594 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.138 0.862 31 H 0.142 0.858 32 H 0.124 0.876 33 H 0.047 0.953 34 H 0.051 0.949 35 H 0.059 0.941 36 H 0.132 0.868 37 H 0.127 0.873 38 H 0.063 0.937 39 H 0.036 0.964 40 H 0.077 0.923 41 H 0.114 0.886 42 H 0.289 0.711 43 H 0.110 0.890 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.215 -12.788 -5.249 13.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.276 6.276 3 C 0.306 3.694 4 O -0.437 6.437 5 C -0.137 4.137 6 C -0.126 4.126 7 C -0.039 4.039 8 H 0.077 0.923 9 C -0.009 4.009 10 O -0.309 6.309 11 C -0.005 4.005 12 C -0.098 4.098 13 N -0.206 5.206 14 C 0.061 3.939 15 C -0.243 4.243 16 C 0.095 3.905 17 C -0.518 4.518 18 H 0.100 0.900 19 C -0.182 4.182 20 N -0.441 5.441 21 Si 0.809 3.191 22 H -0.184 1.184 23 H -0.193 1.193 24 H -0.180 1.180 25 C -0.317 4.317 26 C -0.045 4.045 27 N -0.314 5.314 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.156 0.844 31 H 0.160 0.840 32 H 0.142 0.858 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.150 0.850 37 H 0.145 0.855 38 H 0.081 0.919 39 H 0.054 0.946 40 H 0.096 0.904 41 H 0.132 0.868 42 H 0.100 0.900 43 H 0.128 0.872 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 1.002 -13.275 -6.043 14.620 hybrid contribution -0.705 2.078 1.145 2.475 sum 0.297 -11.197 -4.898 12.225 Atomic orbital electron populations 1.23531 0.75162 1.05758 1.02158 1.86495 1.24741 1.32488 1.83848 1.24291 0.93090 0.81018 0.71024 1.90715 1.68271 1.37918 1.46787 1.21427 0.85871 0.98238 1.08145 1.21174 0.94173 0.95097 1.02152 1.22075 0.94994 0.87908 0.98911 0.92330 1.22985 0.80722 1.02972 0.94253 1.87932 1.22342 1.27168 1.93433 1.22756 1.01067 0.82605 0.94033 1.22835 0.85668 1.01929 0.99405 1.60051 1.11450 1.18728 1.30349 1.19508 0.96123 0.90276 0.87951 1.21718 1.08556 0.93600 1.00436 1.18171 0.86682 0.94262 0.91396 1.19909 1.44123 0.92490 0.95318 0.89978 1.26863 0.91091 1.06474 0.93754 1.69852 1.32285 1.40088 1.01918 0.85091 0.79253 0.75089 0.79690 1.18366 1.19300 1.17998 1.21821 1.13735 0.94788 1.01312 1.21851 0.95142 0.93442 0.94053 1.67372 1.23206 1.39951 1.00848 0.92801 0.92179 0.84422 0.84031 0.85765 0.93384 0.92993 0.92298 0.85004 0.85506 0.91887 0.94607 0.90445 0.86788 0.89971 0.87165 0.83154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.56 113.37 1.20 1.70 16 2 O -0.36 -8.55 10.57 -51.49 -0.54 -9.10 16 3 C 0.46 13.55 7.96 71.24 0.57 14.11 16 4 O -0.55 -21.25 15.72 21.96 0.35 -20.91 16 5 C -0.10 -2.45 5.64 29.85 0.17 -2.28 16 6 C -0.09 -3.06 3.81 30.59 0.12 -2.94 16 7 C 0.07 2.31 1.62 44.92 0.07 2.38 16 8 H 0.06 2.05 7.70 -2.38 -0.02 2.04 16 9 C 0.07 1.73 5.99 72.02 0.43 2.16 16 10 O -0.39 -10.67 10.83 -148.98 -1.61 -12.28 16 11 C 0.07 1.91 7.01 72.01 0.50 2.41 16 12 C 0.03 0.98 5.56 86.31 0.48 1.46 16 13 N -0.48 -19.48 4.52 -677.21 -3.06 -22.54 16 14 C 0.29 13.71 4.83 132.91 0.64 14.35 16 15 C -0.22 -11.80 8.53 23.01 0.20 -11.61 16 16 C 0.10 5.68 5.60 -21.12 -0.12 5.56 16 17 C -0.49 -26.29 9.13 23.52 0.21 -26.08 16 18 H 0.08 4.22 7.87 -2.91 -0.02 4.20 16 19 C 0.03 1.74 5.29 85.29 0.45 2.19 16 20 N -0.82 -43.28 10.76 21.84 0.23 -43.04 16 21 Si 0.99 37.96 29.57 68.60 2.03 39.99 16 22 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 23 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 24 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 25 C -0.29 -14.61 9.85 22.60 0.22 -14.38 16 26 C 0.11 5.00 11.10 84.26 0.94 5.93 16 27 N -0.59 -27.61 7.53 -194.47 -1.46 -29.07 16 28 H 0.05 1.10 8.13 -2.39 -0.02 1.08 16 29 H 0.06 1.14 8.13 -2.39 -0.02 1.12 16 30 H 0.14 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.14 2.34 6.58 -2.38 -0.02 2.32 16 32 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 33 H 0.05 2.14 5.99 -2.39 -0.01 2.12 16 34 H 0.05 1.97 8.04 -2.38 -0.02 1.95 16 35 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.13 2.39 6.72 -2.39 -0.02 2.37 16 37 H 0.13 2.56 8.14 -2.39 -0.02 2.55 16 38 H 0.06 1.64 8.14 -2.39 -0.02 1.63 16 39 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.08 2.78 8.02 -2.38 -0.02 2.76 16 41 H 0.11 6.50 6.16 -2.91 -0.02 6.48 16 42 H 0.29 13.92 8.29 -92.71 -0.77 13.15 16 43 H 0.11 5.08 8.06 -2.91 -0.02 5.05 16 44 H 0.15 5.72 8.06 -2.91 -0.02 5.70 16 Total: -1.00 -70.45 359.90 3.02 -67.44 By element: Atomic # 1 Polarization: 33.53 SS G_CDS: 1.01 Total: 34.54 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: 6.08 Total: -5.04 kcal Atomic # 7 Polarization: -90.36 SS G_CDS: -4.29 Total: -94.65 kcal Atomic # 8 Polarization: -40.47 SS G_CDS: -1.81 Total: -42.29 kcal Atomic # 14 Polarization: 37.96 SS G_CDS: 2.03 Total: 39.99 kcal Total: -70.45 3.02 -67.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158960634.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.980 kcal (2) G-P(sol) polarization free energy of solvation -70.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds