Wall clock time and date at job start Tue Mar 31 2020 12:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34223 * 117.00446 * 2 1 4 4 O 1.20830 * 119.99947 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00309 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.54532 * 300.00473 * 5 3 2 7 7 N 1.46500 * 109.47189 * 59.99707 * 6 5 3 8 8 C 1.38360 * 120.00229 * 179.97438 * 7 6 5 9 9 C 1.39712 * 119.42803 * 0.29714 * 8 7 6 10 10 C 1.36571 * 119.48936 * 180.25685 * 9 8 7 11 11 C 1.41319 * 118.40774 * 359.45576 * 10 9 8 12 12 C 1.41201 * 120.56586 * 180.25562 * 11 10 9 13 13 H 1.08002 * 119.99937 * 155.71338 * 12 11 10 14 14 C 1.39876 * 120.00249 * 335.71365 * 12 11 10 15 15 N 1.30895 * 119.99985 * 343.32271 * 14 12 11 16 16 Si 1.86804 * 120.00038 * 163.32084 * 14 12 11 17 17 H 1.48502 * 109.47019 * 59.99997 * 16 14 12 18 18 H 1.48493 * 109.46876 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46959 * 300.00067 * 16 14 12 20 20 C 1.40752 * 118.86220 * 0.27915 * 11 10 9 21 21 N 1.31486 * 120.36871 * 359.97438 * 20 11 10 22 22 C 1.53181 * 109.54201 * 60.18306 * 5 3 2 23 23 C 1.53280 * 109.06523 * 176.85539 * 22 5 3 24 24 O 1.42907 * 109.45777 * 302.43816 * 23 22 5 25 25 C 1.42905 * 114.09322 * 61.15941 * 24 23 22 26 26 C 1.53085 * 109.41943 * 298.84287 * 25 24 23 27 27 H 1.09000 * 109.46997 * 59.99919 * 1 2 3 28 28 H 1.09000 * 109.47444 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47384 * 300.00027 * 1 2 3 30 30 H 1.08994 * 109.46791 * 299.99532 * 6 5 3 31 31 H 1.09001 * 109.46642 * 179.97438 * 6 5 3 32 32 H 0.97007 * 119.99920 * 0.02562 * 7 6 5 33 33 H 1.07997 * 120.25341 * 359.97438 * 9 8 7 34 34 H 1.08000 * 120.79179 * 179.73644 * 10 9 8 35 35 H 0.96999 * 119.99974 * 180.02562 * 15 14 12 36 36 H 1.07995 * 119.81566 * 180.02562 * 20 11 10 37 37 H 1.09011 * 109.52019 * 296.84142 * 22 5 3 38 38 H 1.08999 * 109.52464 * 57.02801 * 22 5 3 39 39 H 1.08999 * 109.45876 * 182.45027 * 23 22 5 40 40 H 1.08996 * 109.47064 * 62.44364 * 23 22 5 41 41 H 1.08999 * 109.48066 * 178.85619 * 25 24 23 42 42 H 1.09003 * 109.49080 * 58.82809 * 25 24 23 43 43 H 1.09009 * 109.52026 * 297.70495 * 26 25 24 44 44 H 1.08998 * 109.57862 * 177.54940 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2747 0.0006 6 6 4.1147 0.5817 1.2496 7 7 3.7002 -0.8234 1.2502 8 6 4.0802 -1.6564 2.2875 9 6 4.8542 -1.1435 3.3314 10 6 5.2345 -1.9659 4.3533 11 6 4.8166 -3.3155 4.3212 12 6 5.1791 -4.2043 5.3568 13 1 4.5763 -5.0785 5.5537 14 6 6.3188 -3.9525 6.1275 15 7 7.2210 -3.1039 5.7040 16 14 6.5535 -4.8272 7.7614 17 1 6.5895 -6.2947 7.5365 18 1 7.8317 -4.3899 8.3778 19 1 5.4260 -4.4929 8.6682 20 6 4.0332 -3.7586 3.2390 21 7 3.6979 -2.9276 2.2768 22 6 4.1161 0.5845 -1.2515 23 6 5.6408 0.7394 -1.2800 24 8 5.9788 2.1276 -1.2514 25 6 5.5299 2.8133 -0.0807 26 6 4.0026 2.7430 -0.0039 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 3.7254 1.0758 2.1397 31 1 5.2032 0.6391 1.2485 32 1 3.1598 -1.1700 0.5229 33 1 5.1532 -0.1058 3.3280 34 1 5.8363 -1.5926 5.1687 35 1 8.0115 -2.9295 6.2384 36 1 3.7051 -4.7867 3.1991 37 1 3.8557 -0.4738 -1.2280 38 1 3.6866 1.0465 -2.1404 39 1 6.0346 0.2881 -2.1907 40 1 6.0728 0.2420 -0.4117 41 1 5.8440 3.8560 -0.1274 42 1 5.9603 2.3433 0.8036 43 1 3.5708 3.2487 -0.8678 44 1 3.6602 3.2276 0.9104 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161991090.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:29 Heat of formation + Delta-G solvation = -97.970188 kcal Electronic energy + Delta-G solvation = -27705.889660 eV Core-core repulsion = 23816.151149 eV Total energy + Delta-G solvation = -3889.738510 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.26946 -39.35714 -38.44789 -36.60200 -35.90168 -34.11012 -32.77407 -31.35902 -30.59736 -29.15027 -28.19059 -26.75327 -25.24324 -24.29966 -23.65651 -21.86002 -21.78977 -20.72937 -19.14729 -17.67267 -17.37109 -17.23200 -16.63221 -16.20018 -16.11482 -15.67078 -15.27758 -15.03950 -14.98605 -14.35430 -14.13180 -13.78977 -13.69431 -13.25354 -13.03762 -12.93198 -12.71295 -12.56661 -12.32068 -12.01841 -11.84370 -11.57591 -11.53678 -11.41171 -11.23692 -11.06245 -10.92442 -10.84968 -10.70707 -10.57490 -10.39737 -9.80449 -9.66354 -9.40073 -8.74217 -8.24868 -8.01313 -6.84524 -6.61956 -4.19823 2.07429 2.56252 2.75720 2.98664 3.07812 3.10932 3.29234 3.72330 3.87011 3.95924 4.36661 4.38143 4.56937 4.70484 4.72561 4.75020 5.03675 5.05020 5.11671 5.15364 5.30053 5.41921 5.47546 5.50689 5.55801 5.62642 5.67352 5.79813 5.83023 5.88145 5.97414 6.09154 6.29707 6.46776 6.60580 6.85983 7.01772 7.17157 7.31949 7.39335 7.62746 7.74967 7.91033 8.24636 8.43752 8.66186 8.84244 8.91649 9.71634 10.23238 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017188 B = 0.003358 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.664128 B = 8335.551764 C = 9268.463968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.345 6.345 3 C 0.477 3.523 4 O -0.510 6.510 5 C -0.061 4.061 6 C 0.151 3.849 7 N -0.740 5.740 8 C 0.280 3.720 9 C -0.205 4.205 10 C -0.092 4.092 11 C 0.030 3.970 12 C -0.458 4.458 13 H 0.077 0.923 14 C 0.074 3.926 15 N -0.807 5.807 16 Si 0.908 3.092 17 H -0.266 1.266 18 H -0.280 1.280 19 H -0.265 1.265 20 C 0.012 3.988 21 N -0.519 5.519 22 C -0.142 4.142 23 C 0.060 3.940 24 O -0.381 6.381 25 C 0.058 3.942 26 C -0.132 4.132 27 H 0.060 0.940 28 H 0.103 0.897 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.396 0.604 33 H 0.094 0.906 34 H 0.127 0.873 35 H 0.279 0.721 36 H 0.127 0.873 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.100 0.900 40 H 0.065 0.935 41 H 0.100 0.900 42 H 0.060 0.940 43 H 0.084 0.916 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.596 9.578 -10.289 14.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.260 6.260 3 C 0.319 3.681 4 O -0.397 6.397 5 C -0.062 4.062 6 C 0.025 3.975 7 N -0.383 5.383 8 C 0.048 3.952 9 C -0.229 4.229 10 C -0.119 4.119 11 C 0.025 3.975 12 C -0.489 4.489 13 H 0.095 0.905 14 C -0.142 4.142 15 N -0.433 5.433 16 Si 0.733 3.267 17 H -0.191 1.191 18 H -0.205 1.205 19 H -0.190 1.190 20 C -0.146 4.146 21 N -0.234 5.234 22 C -0.180 4.180 23 C -0.016 4.016 24 O -0.300 6.300 25 C -0.019 4.019 26 C -0.170 4.170 27 H 0.078 0.922 28 H 0.121 0.879 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.233 0.767 33 H 0.112 0.888 34 H 0.145 0.855 35 H 0.090 0.910 36 H 0.144 0.856 37 H 0.111 0.889 38 H 0.095 0.905 39 H 0.118 0.882 40 H 0.083 0.917 41 H 0.119 0.881 42 H 0.078 0.922 43 H 0.103 0.897 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.912 9.866 -10.968 15.549 hybrid contribution 0.051 -0.268 1.529 1.554 sum -4.861 9.599 -9.439 14.313 Atomic orbital electron populations 1.23271 0.76284 1.03947 1.02138 1.86507 1.23382 1.32757 1.83362 1.23495 0.91365 0.81517 0.71688 1.90640 1.67022 1.36456 1.45627 1.20910 0.87679 0.98721 0.98902 1.21094 0.99225 0.83257 0.93929 1.43659 1.61740 1.06659 1.26210 1.17683 0.99009 0.88610 0.89904 1.20806 1.05256 0.99236 0.97644 1.21300 0.99906 0.92923 0.97789 1.18350 0.93373 0.92696 0.93105 1.19298 1.08120 1.08473 1.13031 0.90492 1.25836 0.94826 0.94662 0.98844 1.69800 1.07327 1.29931 1.36282 0.86376 0.78149 0.80360 0.81854 1.19082 1.20483 1.18993 1.22193 1.04499 0.96824 0.91083 1.66516 1.25088 1.02477 1.29348 1.22269 0.97772 1.02288 0.95628 1.22668 0.93045 0.82552 1.03367 1.87935 1.78251 1.21942 1.41840 1.22682 0.92231 0.98179 0.88765 1.22108 0.97370 0.92683 1.04836 0.92164 0.87856 0.91956 0.92608 0.91271 0.76672 0.88750 0.85524 0.90997 0.85602 0.88945 0.90522 0.88206 0.91685 0.88144 0.92159 0.89687 0.89562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.56 101.05 1.07 1.47 16 2 O -0.34 -4.66 8.12 -39.24 -0.32 -4.98 16 3 C 0.48 6.58 6.55 36.00 0.24 6.81 16 4 O -0.51 -7.87 15.72 -18.75 -0.29 -8.17 16 5 C -0.06 -0.73 0.50 -155.48 -0.08 -0.81 16 6 C 0.15 2.15 3.20 -4.04 -0.01 2.14 16 7 N -0.74 -12.89 4.89 -60.36 -0.30 -13.19 16 8 C 0.28 6.17 7.64 -155.13 -1.19 4.98 16 9 C -0.21 -4.65 9.24 -39.63 -0.37 -5.01 16 10 C -0.09 -2.33 8.74 -39.01 -0.34 -2.68 16 11 C 0.03 0.78 5.59 -106.65 -0.60 0.18 16 12 C -0.46 -11.91 9.07 -37.84 -0.34 -12.25 16 13 H 0.08 1.91 7.90 -52.49 -0.41 1.50 16 14 C 0.07 1.83 5.19 -17.34 -0.09 1.74 16 15 N -0.81 -20.49 10.91 55.54 0.61 -19.89 16 16 Si 0.91 18.48 29.59 -169.99 -5.03 13.45 16 17 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 18 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 19 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 20 C 0.01 0.30 10.97 -16.75 -0.18 0.12 16 21 N -0.52 -12.39 10.37 -11.79 -0.12 -12.51 16 22 C -0.14 -1.55 4.74 -26.49 -0.13 -1.68 16 23 C 0.06 0.65 6.57 37.30 0.25 0.90 16 24 O -0.38 -4.40 10.77 -35.23 -0.38 -4.78 16 25 C 0.06 0.57 6.57 37.20 0.24 0.82 16 26 C -0.13 -1.40 4.23 -26.60 -0.11 -1.51 16 27 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 28 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 30 H 0.06 0.83 7.89 -51.93 -0.41 0.42 16 31 H 0.07 0.96 4.78 -51.93 -0.25 0.71 16 32 H 0.40 6.69 5.47 -40.82 -0.22 6.47 16 33 H 0.09 1.88 6.64 -52.49 -0.35 1.53 16 34 H 0.13 3.28 6.20 -52.49 -0.33 2.96 16 35 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 36 H 0.13 2.91 8.06 -52.49 -0.42 2.49 16 37 H 0.09 1.05 6.81 -51.92 -0.35 0.70 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.06 0.78 6.60 -51.93 -0.34 0.43 16 41 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.06 0.59 6.60 -51.93 -0.34 0.25 16 43 H 0.08 0.92 8.03 -51.92 -0.42 0.50 16 44 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 351.28 15.07 5.29 5.29 Total: -1.00 -29.78 351.28 -8.12 -37.90 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -5.94 Total: 11.64 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -1.64 Total: -4.77 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: 0.19 Total: -45.58 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.99 Total: -17.93 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.78 -8.12 -37.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161991090.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.067 kcal (2) G-P(sol) polarization free energy of solvation -29.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds