Wall clock time and date at job start Tue Mar 31 2020 12:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34223 * 117.00446 * 2 1 4 4 O 1.20830 * 119.99947 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00309 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.54532 * 300.00473 * 5 3 2 7 7 N 1.46500 * 109.47189 * 59.99707 * 6 5 3 8 8 C 1.38360 * 120.00229 * 179.97438 * 7 6 5 9 9 C 1.39712 * 119.42803 * 0.29714 * 8 7 6 10 10 C 1.36571 * 119.48936 * 180.25685 * 9 8 7 11 11 C 1.41319 * 118.40774 * 359.45576 * 10 9 8 12 12 C 1.41201 * 120.56586 * 180.25562 * 11 10 9 13 13 H 1.08002 * 119.99937 * 155.71338 * 12 11 10 14 14 C 1.39876 * 120.00249 * 335.71365 * 12 11 10 15 15 N 1.30895 * 119.99985 * 343.32271 * 14 12 11 16 16 Si 1.86804 * 120.00038 * 163.32084 * 14 12 11 17 17 H 1.48502 * 109.47019 * 59.99997 * 16 14 12 18 18 H 1.48493 * 109.46876 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46959 * 300.00067 * 16 14 12 20 20 C 1.40752 * 118.86220 * 0.27915 * 11 10 9 21 21 N 1.31486 * 120.36871 * 359.97438 * 20 11 10 22 22 C 1.53181 * 109.54201 * 60.18306 * 5 3 2 23 23 C 1.53280 * 109.06523 * 176.85539 * 22 5 3 24 24 O 1.42907 * 109.45777 * 302.43816 * 23 22 5 25 25 C 1.42905 * 114.09322 * 61.15941 * 24 23 22 26 26 C 1.53085 * 109.41943 * 298.84287 * 25 24 23 27 27 H 1.09000 * 109.46997 * 59.99919 * 1 2 3 28 28 H 1.09000 * 109.47444 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47384 * 300.00027 * 1 2 3 30 30 H 1.08994 * 109.46791 * 299.99532 * 6 5 3 31 31 H 1.09001 * 109.46642 * 179.97438 * 6 5 3 32 32 H 0.97007 * 119.99920 * 0.02562 * 7 6 5 33 33 H 1.07997 * 120.25341 * 359.97438 * 9 8 7 34 34 H 1.08000 * 120.79179 * 179.73644 * 10 9 8 35 35 H 0.96999 * 119.99974 * 180.02562 * 15 14 12 36 36 H 1.07995 * 119.81566 * 180.02562 * 20 11 10 37 37 H 1.09011 * 109.52019 * 296.84142 * 22 5 3 38 38 H 1.08999 * 109.52464 * 57.02801 * 22 5 3 39 39 H 1.08999 * 109.45876 * 182.45027 * 23 22 5 40 40 H 1.08996 * 109.47064 * 62.44364 * 23 22 5 41 41 H 1.08999 * 109.48066 * 178.85619 * 25 24 23 42 42 H 1.09003 * 109.49080 * 58.82809 * 25 24 23 43 43 H 1.09009 * 109.52026 * 297.70495 * 26 25 24 44 44 H 1.08998 * 109.57862 * 177.54940 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2747 0.0006 6 6 4.1147 0.5817 1.2496 7 7 3.7002 -0.8234 1.2502 8 6 4.0802 -1.6564 2.2875 9 6 4.8542 -1.1435 3.3314 10 6 5.2345 -1.9659 4.3533 11 6 4.8166 -3.3155 4.3212 12 6 5.1791 -4.2043 5.3568 13 1 4.5763 -5.0785 5.5537 14 6 6.3188 -3.9525 6.1275 15 7 7.2210 -3.1039 5.7040 16 14 6.5535 -4.8272 7.7614 17 1 6.5895 -6.2947 7.5365 18 1 7.8317 -4.3899 8.3778 19 1 5.4260 -4.4929 8.6682 20 6 4.0332 -3.7586 3.2390 21 7 3.6979 -2.9276 2.2768 22 6 4.1161 0.5845 -1.2515 23 6 5.6408 0.7394 -1.2800 24 8 5.9788 2.1276 -1.2514 25 6 5.5299 2.8133 -0.0807 26 6 4.0026 2.7430 -0.0039 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 3.7254 1.0758 2.1397 31 1 5.2032 0.6391 1.2485 32 1 3.1598 -1.1700 0.5229 33 1 5.1532 -0.1058 3.3280 34 1 5.8363 -1.5926 5.1687 35 1 8.0115 -2.9295 6.2384 36 1 3.7051 -4.7867 3.1991 37 1 3.8557 -0.4738 -1.2280 38 1 3.6866 1.0465 -2.1404 39 1 6.0346 0.2881 -2.1907 40 1 6.0728 0.2420 -0.4117 41 1 5.8440 3.8560 -0.1274 42 1 5.9603 2.3433 0.8036 43 1 3.5708 3.2487 -0.8678 44 1 3.6602 3.2276 0.9104 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161991090.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:28 Heat of formation + Delta-G solvation = -115.131766 kcal Electronic energy + Delta-G solvation = -27706.633841 eV Core-core repulsion = 23816.151149 eV Total energy + Delta-G solvation = -3890.482692 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.30961 -40.46823 -40.08027 -37.66517 -37.20138 -35.76632 -34.21110 -32.47919 -32.20523 -30.86015 -29.14918 -28.02699 -26.52762 -25.69946 -24.62586 -23.67860 -22.76856 -22.48303 -20.18216 -19.16647 -18.77555 -18.45627 -17.84560 -17.52126 -17.11688 -16.91581 -16.77871 -16.27415 -15.96598 -15.59692 -15.45421 -15.31769 -14.95432 -14.55799 -14.36026 -14.18599 -13.89699 -13.72507 -13.59997 -13.43814 -13.37635 -13.03689 -12.99192 -12.75355 -12.48463 -12.38520 -12.23122 -11.86304 -11.83216 -11.74795 -11.62639 -11.31067 -11.19651 -10.59088 -10.38191 -10.13110 -9.88913 -8.65210 -8.39489 -6.11102 0.91791 0.99394 1.15458 1.42842 1.52947 1.59478 1.60038 2.25978 2.52548 2.84469 2.92485 3.35029 3.43594 3.50101 3.76110 3.82584 3.91261 4.19992 4.21004 4.23080 4.26938 4.27791 4.43087 4.49051 4.60787 4.62264 4.66038 4.66330 4.72489 4.78558 4.80070 4.96070 5.00047 5.02056 5.11247 5.28366 5.30487 5.43704 5.58044 5.89534 6.00796 6.19659 6.48381 6.57361 6.63202 6.86527 6.95009 7.17214 7.87471 8.41515 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017188 B = 0.003358 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.664128 B = 8335.551764 C = 9268.463968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.357 6.357 3 C 0.475 3.525 4 O -0.528 6.528 5 C -0.054 4.054 6 C 0.149 3.851 7 N -0.728 5.728 8 C 0.290 3.710 9 C -0.208 4.208 10 C -0.106 4.106 11 C -0.001 4.001 12 C -0.493 4.493 13 H 0.076 0.924 14 C 0.036 3.964 15 N -0.836 5.836 16 Si 0.979 3.021 17 H -0.261 1.261 18 H -0.270 1.270 19 H -0.263 1.263 20 C 0.000 4.000 21 N -0.532 5.532 22 C -0.137 4.137 23 C 0.061 3.939 24 O -0.391 6.391 25 C 0.056 3.944 26 C -0.127 4.127 27 H 0.071 0.929 28 H 0.122 0.878 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.079 0.921 32 H 0.401 0.599 33 H 0.121 0.879 34 H 0.115 0.885 35 H 0.286 0.714 36 H 0.134 0.866 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.115 0.885 40 H 0.052 0.948 41 H 0.122 0.878 42 H 0.061 0.939 43 H 0.085 0.915 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.487 10.385 -10.750 15.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.272 6.272 3 C 0.319 3.681 4 O -0.418 6.418 5 C -0.056 4.056 6 C 0.024 3.976 7 N -0.370 5.370 8 C 0.056 3.944 9 C -0.232 4.232 10 C -0.133 4.133 11 C -0.006 4.006 12 C -0.524 4.524 13 H 0.095 0.905 14 C -0.178 4.178 15 N -0.464 5.464 16 Si 0.801 3.199 17 H -0.186 1.186 18 H -0.195 1.195 19 H -0.188 1.188 20 C -0.157 4.157 21 N -0.248 5.248 22 C -0.175 4.175 23 C -0.015 4.015 24 O -0.310 6.310 25 C -0.020 4.020 26 C -0.165 4.165 27 H 0.090 0.910 28 H 0.140 0.860 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.239 0.761 33 H 0.139 0.861 34 H 0.133 0.867 35 H 0.096 0.904 36 H 0.151 0.849 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.133 0.867 40 H 0.071 0.929 41 H 0.140 0.860 42 H 0.079 0.921 43 H 0.104 0.896 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.818 10.688 -11.464 16.398 hybrid contribution -0.064 -0.416 1.533 1.589 sum -4.882 10.272 -9.931 15.099 Atomic orbital electron populations 1.23504 0.74882 1.05389 1.02471 1.86487 1.24915 1.32721 1.83118 1.23787 0.91915 0.81319 0.71102 1.90630 1.67557 1.36997 1.46588 1.20920 0.86677 0.99714 0.98291 1.21253 0.99849 0.81372 0.95129 1.43731 1.60941 1.07443 1.24865 1.17993 0.97523 0.88495 0.90415 1.21020 1.04928 1.00265 0.97018 1.21313 1.00377 0.93202 0.98437 1.18632 0.94575 0.93420 0.93988 1.19540 1.09275 1.09135 1.14462 0.90547 1.26626 0.93969 0.95322 1.01854 1.69850 1.07828 1.31098 1.37607 0.85288 0.78274 0.79196 0.77150 1.18566 1.19475 1.18754 1.22352 1.04629 0.97526 0.91156 1.66598 1.25806 1.03220 1.29180 1.22252 0.97941 1.01901 0.95385 1.22694 0.92727 0.82452 1.03647 1.87933 1.78400 1.22107 1.42539 1.22825 0.91515 0.99332 0.88321 1.22105 0.97947 0.91349 1.05078 0.90992 0.85950 0.92499 0.92757 0.90352 0.76111 0.86115 0.86717 0.90365 0.84864 0.89426 0.89465 0.86655 0.92924 0.85971 0.92117 0.89606 0.89211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.56 113.37 1.20 1.81 16 2 O -0.36 -9.16 8.12 -51.35 -0.42 -9.58 16 3 C 0.48 12.40 6.55 71.23 0.47 12.87 16 4 O -0.53 -15.61 15.72 21.95 0.35 -15.26 16 5 C -0.05 -1.22 0.50 -52.81 -0.03 -1.25 16 6 C 0.15 3.99 3.20 86.38 0.28 4.27 16 7 N -0.73 -24.38 4.89 -344.87 -1.69 -26.06 16 8 C 0.29 12.57 7.64 133.32 1.02 13.59 16 9 C -0.21 -9.33 9.24 22.24 0.21 -9.12 16 10 C -0.11 -5.46 8.74 22.64 0.20 -5.26 16 11 C 0.00 -0.05 5.59 -21.18 -0.12 -0.17 16 12 C -0.49 -26.22 9.07 23.39 0.21 -26.01 16 13 H 0.08 3.90 7.90 -2.91 -0.02 3.88 16 14 C 0.04 1.76 5.19 85.23 0.44 2.21 16 15 N -0.84 -42.99 10.91 21.82 0.24 -42.76 16 16 Si 0.98 37.89 29.59 68.60 2.03 39.92 16 17 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 18 H -0.27 -9.93 7.11 99.48 0.71 -9.22 16 19 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 20 C 0.00 0.02 10.97 85.36 0.94 0.96 16 21 N -0.53 -25.31 10.37 -191.21 -1.98 -27.29 16 22 C -0.14 -2.73 4.74 30.75 0.15 -2.59 16 23 C 0.06 1.21 6.57 72.08 0.47 1.68 16 24 O -0.39 -8.13 10.77 -148.98 -1.60 -9.74 16 25 C 0.06 0.97 6.57 72.01 0.47 1.45 16 26 C -0.13 -2.41 4.23 30.68 0.13 -2.28 16 27 H 0.07 1.26 8.13 -2.39 -0.02 1.24 16 28 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.06 1.20 8.13 -2.39 -0.02 1.18 16 30 H 0.05 1.51 7.89 -2.39 -0.02 1.49 16 31 H 0.08 2.02 4.78 -2.39 -0.01 2.01 16 32 H 0.40 12.97 5.47 -92.70 -0.51 12.46 16 33 H 0.12 4.65 6.64 -2.91 -0.02 4.63 16 34 H 0.12 6.09 6.20 -2.91 -0.02 6.07 16 35 H 0.29 13.37 8.30 -92.71 -0.77 12.60 16 36 H 0.13 6.31 8.06 -2.91 -0.02 6.28 16 37 H 0.09 1.85 6.81 -2.38 -0.02 1.83 16 38 H 0.09 1.58 8.14 -2.39 -0.02 1.57 16 39 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.05 1.17 6.60 -2.39 -0.02 1.15 16 41 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.06 1.05 6.60 -2.39 -0.02 1.03 16 43 H 0.09 1.67 8.03 -2.38 -0.02 1.65 16 44 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -63.66 351.28 3.48 -60.18 By element: Atomic # 1 Polarization: 37.92 SS G_CDS: 0.53 Total: 38.45 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: 6.03 Total: -7.86 kcal Atomic # 7 Polarization: -92.68 SS G_CDS: -3.43 Total: -96.11 kcal Atomic # 8 Polarization: -32.90 SS G_CDS: -1.68 Total: -34.58 kcal Atomic # 14 Polarization: 37.89 SS G_CDS: 2.03 Total: 39.92 kcal Total: -63.66 3.48 -60.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161991090.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.953 kcal (2) G-P(sol) polarization free energy of solvation -63.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds