Wall clock time and date at job start Tue Mar 31 2020 12:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34234 * 116.99494 * 2 1 4 4 O 1.20825 * 120.00383 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99491 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.54698 * 300.00370 * 5 3 2 7 7 N 1.46502 * 109.46915 * 59.99789 * 6 5 3 8 8 C 1.38089 * 119.99655 * 179.97438 * 7 6 5 9 9 N 1.32272 * 119.90614 * 359.97438 * 8 7 6 10 10 C 1.31971 * 121.86422 * 179.67752 * 9 8 7 11 11 C 1.38683 * 121.44675 * 0.64038 * 10 9 8 12 12 C 1.38011 * 119.62737 * 359.39332 * 11 10 9 13 13 C 1.40999 * 118.27995 * 0.28313 * 12 11 10 14 14 C 1.41017 * 120.70670 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00518 * 204.90216 * 14 13 12 16 16 C 1.39953 * 119.99764 * 24.90457 * 14 13 12 17 17 N 1.30868 * 120.00061 * 14.50205 * 16 14 13 18 18 Si 1.86806 * 119.99768 * 194.50008 * 16 14 13 19 19 H 1.48506 * 109.47028 * 60.00056 * 18 16 14 20 20 H 1.48500 * 109.46912 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47252 * 299.99985 * 18 16 14 22 22 C 1.53177 * 109.54088 * 60.18508 * 5 3 2 23 23 C 1.53286 * 109.06399 * 176.85156 * 22 5 3 24 24 O 1.42908 * 109.45495 * 302.44237 * 23 22 5 25 25 C 1.42898 * 114.09835 * 61.16042 * 24 23 22 26 26 C 1.53096 * 109.41625 * 298.83762 * 25 24 23 27 27 H 1.09005 * 109.46882 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47006 * 299.99287 * 1 2 3 29 29 H 1.08994 * 109.47724 * 59.99709 * 1 2 3 30 30 H 1.09001 * 109.46988 * 300.00246 * 6 5 3 31 31 H 1.09000 * 109.47220 * 180.02562 * 6 5 3 32 32 H 0.96994 * 120.00190 * 0.02562 * 7 6 5 33 33 H 1.07995 * 119.27720 * 180.31231 * 10 9 8 34 34 H 1.08001 * 120.18790 * 179.67331 * 11 10 9 35 35 H 1.07992 * 120.86360 * 180.30052 * 12 11 10 36 36 H 0.97000 * 119.99483 * 180.02562 * 17 16 14 37 37 H 1.09002 * 109.52030 * 296.83705 * 22 5 3 38 38 H 1.08997 * 109.52543 * 57.02550 * 22 5 3 39 39 H 1.08991 * 109.46007 * 182.44429 * 23 22 5 40 40 H 1.08998 * 109.46636 * 62.44078 * 23 22 5 41 41 H 1.09001 * 109.48014 * 178.85467 * 25 24 23 42 42 H 1.08996 * 109.49202 * 58.82610 * 25 24 23 43 43 H 1.09000 * 109.51765 * 297.70646 * 26 25 24 44 44 H 1.08992 * 109.57779 * 177.55005 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.1157 0.5815 1.2476 7 7 3.7012 -0.8237 1.2480 8 6 4.0814 -1.6554 2.2826 9 7 4.8203 -1.1815 3.2721 10 6 5.2002 -1.9401 4.2830 11 6 4.8530 -3.2810 4.3518 12 6 4.0831 -3.8386 3.3513 13 6 3.6793 -3.0142 2.2811 14 6 2.8915 -3.5307 1.2317 15 1 2.9153 -3.0638 0.2582 16 6 2.0786 -4.6485 1.4519 17 7 1.8249 -5.0426 2.6738 18 14 1.3558 -5.5780 0.0016 19 1 2.4552 -6.0963 -0.8517 20 1 0.5376 -6.7129 0.4992 21 1 0.4997 -4.6633 -0.7955 22 6 4.1150 0.5853 -1.2534 23 6 5.6397 0.7403 -1.2831 24 8 5.9776 2.1286 -1.2541 25 6 5.5297 2.8137 -0.0828 26 6 4.0024 2.7434 -0.0049 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 3.7270 1.0752 2.1383 31 1 5.2042 0.6397 1.2462 32 1 3.1603 -1.1699 0.5211 33 1 5.7990 -1.5085 5.0714 34 1 5.1793 -3.8844 5.1860 35 1 3.7971 -4.8794 3.3872 36 1 1.2618 -5.8176 2.8263 37 1 3.8548 -0.4730 -1.2301 38 1 3.6848 1.0477 -2.1418 39 1 6.0329 0.2894 -2.1942 40 1 6.0724 0.2427 -0.4153 41 1 5.8437 3.8565 -0.1293 42 1 5.9608 2.3434 0.8009 43 1 3.5700 3.2493 -0.8681 44 1 3.6607 3.2275 0.9099 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161991644.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:32 Heat of formation + Delta-G solvation = -99.473305 kcal Electronic energy + Delta-G solvation = -28586.672030 eV Core-core repulsion = 24696.868339 eV Total energy + Delta-G solvation = -3889.803690 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.05998 -39.17231 -38.37956 -36.38192 -35.59548 -33.96868 -33.03116 -31.21330 -30.38815 -29.00234 -27.93760 -26.26252 -25.32958 -24.56330 -23.64552 -21.61382 -21.44753 -20.61126 -18.98789 -17.50186 -17.25106 -17.17531 -16.50613 -16.08822 -15.98012 -15.51008 -15.23877 -14.88523 -14.78730 -14.15121 -13.99613 -13.82666 -13.48761 -13.10925 -12.95362 -12.78684 -12.57991 -12.43905 -12.15136 -11.97080 -11.76854 -11.46493 -11.40278 -11.33135 -11.24493 -10.93987 -10.77802 -10.63504 -10.57464 -10.49761 -10.22933 -9.78164 -9.51814 -9.32753 -8.96367 -8.11578 -7.89960 -6.80093 -6.52221 -4.24652 2.28433 2.73246 2.79107 3.03111 3.04483 3.10216 3.22982 3.84496 3.89706 4.13057 4.56871 4.58775 4.69210 4.80255 4.89529 4.93831 5.19210 5.26495 5.31995 5.35461 5.47359 5.56974 5.63743 5.70288 5.71754 5.73991 5.88397 5.97967 6.00014 6.07030 6.12640 6.21869 6.44788 6.52608 6.77256 6.86593 7.11909 7.13799 7.16506 7.64672 7.80750 7.84448 7.99768 8.26576 8.53589 8.65771 8.78177 8.99293 9.76915 10.19973 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011799 B = 0.005340 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.453630 B = 5242.123677 C = 6355.089240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.341 6.341 3 C 0.476 3.524 4 O -0.513 6.513 5 C -0.064 4.064 6 C 0.154 3.846 7 N -0.725 5.725 8 C 0.305 3.695 9 N -0.535 5.535 10 C 0.002 3.998 11 C -0.191 4.191 12 C -0.125 4.125 13 C 0.033 3.967 14 C -0.450 4.450 15 H 0.074 0.926 16 C 0.075 3.925 17 N -0.800 5.800 18 Si 0.905 3.095 19 H -0.265 1.265 20 H -0.280 1.280 21 H -0.266 1.266 22 C -0.143 4.143 23 C 0.062 3.938 24 O -0.383 6.383 25 C 0.059 3.941 26 C -0.130 4.130 27 H 0.104 0.896 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.409 0.591 33 H 0.116 0.884 34 H 0.093 0.907 35 H 0.127 0.873 36 H 0.279 0.721 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.099 0.901 40 H 0.065 0.935 41 H 0.098 0.902 42 H 0.061 0.939 43 H 0.082 0.918 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.388 8.185 -6.840 10.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.256 6.256 3 C 0.319 3.681 4 O -0.402 6.402 5 C -0.066 4.066 6 C 0.028 3.972 7 N -0.369 5.369 8 C 0.067 3.933 9 N -0.252 5.252 10 C -0.152 4.152 11 C -0.214 4.214 12 C -0.152 4.152 13 C 0.026 3.974 14 C -0.481 4.481 15 H 0.092 0.908 16 C -0.142 4.142 17 N -0.427 5.427 18 Si 0.730 3.270 19 H -0.189 1.189 20 H -0.205 1.205 21 H -0.191 1.191 22 C -0.180 4.180 23 C -0.015 4.015 24 O -0.301 6.301 25 C -0.018 4.018 26 C -0.168 4.168 27 H 0.123 0.877 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.250 0.750 33 H 0.134 0.866 34 H 0.112 0.888 35 H 0.145 0.855 36 H 0.090 0.910 37 H 0.111 0.889 38 H 0.094 0.906 39 H 0.117 0.883 40 H 0.083 0.917 41 H 0.116 0.884 42 H 0.079 0.921 43 H 0.101 0.899 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.447 9.375 -6.776 11.658 hybrid contribution -1.468 -1.636 -0.409 2.235 sum -0.021 7.740 -7.185 10.560 Atomic orbital electron populations 1.23266 0.76285 1.04096 1.01855 1.86534 1.23391 1.32490 1.83153 1.23532 0.91425 0.81583 0.71597 1.90618 1.67081 1.36534 1.45941 1.20961 0.87732 0.98655 0.99225 1.20973 0.99170 0.83890 0.93138 1.43827 1.60446 1.06756 1.25856 1.18445 0.97698 0.87850 0.89305 1.66554 1.15818 1.39672 1.03193 1.21341 1.05516 0.91409 0.96906 1.21417 1.03434 0.96322 1.00225 1.21404 0.98645 0.99944 0.95170 1.17905 0.94814 0.89294 0.95430 1.19093 1.21207 1.10667 0.97182 0.90810 1.25793 0.95246 0.96735 0.96387 1.69795 1.29497 1.22326 1.21043 0.86418 0.79401 0.79332 0.81853 1.18941 1.20464 1.19123 1.22266 0.97677 1.02377 0.95724 1.22652 0.93180 0.82474 1.03198 1.87912 1.78326 1.22022 1.41873 1.22669 0.92405 0.97958 0.88739 1.22075 0.97231 0.92910 1.04605 0.87727 0.92040 0.92330 0.92668 0.91297 0.75047 0.86603 0.88841 0.85507 0.90979 0.88943 0.90632 0.88333 0.91712 0.88356 0.92079 0.89912 0.89690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.56 101.05 1.07 1.60 16 2 O -0.34 -5.60 8.12 -39.27 -0.32 -5.92 16 3 C 0.48 7.69 6.55 36.01 0.24 7.92 16 4 O -0.51 -8.99 15.72 -18.75 -0.29 -9.28 16 5 C -0.06 -0.91 0.50 -155.48 -0.08 -0.99 16 6 C 0.15 2.58 4.01 -4.04 -0.02 2.56 16 7 N -0.73 -14.44 4.80 -59.97 -0.29 -14.72 16 8 C 0.30 7.22 7.52 -155.02 -1.17 6.06 16 9 N -0.53 -12.60 9.54 -11.86 -0.11 -12.72 16 10 C 0.00 0.04 11.17 -17.33 -0.19 -0.15 16 11 C -0.19 -4.44 10.08 -39.50 -0.40 -4.84 16 12 C -0.13 -3.18 8.79 -38.62 -0.34 -3.52 16 13 C 0.03 0.83 5.60 -106.47 -0.60 0.23 16 14 C -0.45 -11.07 8.54 -37.89 -0.32 -11.39 16 15 H 0.07 1.71 6.67 -52.49 -0.35 1.36 16 16 C 0.07 1.78 5.23 -17.32 -0.09 1.69 16 17 N -0.80 -19.92 10.83 55.55 0.60 -19.32 16 18 Si 0.91 17.79 29.58 -169.99 -5.03 12.76 16 19 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 20 H -0.28 -5.45 7.11 56.52 0.40 -5.04 16 21 H -0.27 -5.10 7.11 56.52 0.40 -4.69 16 22 C -0.14 -1.83 4.74 -26.49 -0.13 -1.96 16 23 C 0.06 0.75 6.57 37.31 0.25 0.99 16 24 O -0.38 -4.86 10.77 -35.23 -0.38 -5.24 16 25 C 0.06 0.66 6.57 37.21 0.24 0.90 16 26 C -0.13 -1.60 4.23 -26.59 -0.11 -1.71 16 27 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.06 0.85 8.13 -51.93 -0.42 0.42 16 29 H 0.06 0.71 8.13 -51.93 -0.42 0.28 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.07 1.13 5.01 -51.93 -0.26 0.87 16 32 H 0.41 8.02 3.55 -40.82 -0.14 7.87 16 33 H 0.12 2.31 8.06 -52.49 -0.42 1.88 16 34 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 35 H 0.13 3.31 6.17 -52.49 -0.32 2.99 16 36 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 37 H 0.09 1.25 6.81 -51.93 -0.35 0.90 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.06 0.86 6.60 -51.93 -0.34 0.52 16 41 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.06 0.69 6.60 -51.93 -0.34 0.35 16 43 H 0.08 1.03 8.03 -51.93 -0.42 0.61 16 44 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 350.28 15.07 5.28 5.28 Total: -1.00 -28.95 350.28 -8.09 -37.03 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: -5.90 Total: 14.73 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -1.65 Total: -2.60 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: 0.20 Total: -46.76 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.99 Total: -20.44 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -5.03 Total: 12.76 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.95 -8.09 -37.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161991644.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.440 kcal (2) G-P(sol) polarization free energy of solvation -28.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds