Wall clock time and date at job start Tue Mar 31 2020 12:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34234 * 116.99494 * 2 1 4 4 O 1.20825 * 120.00383 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99491 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.54698 * 300.00370 * 5 3 2 7 7 N 1.46502 * 109.46915 * 59.99789 * 6 5 3 8 8 C 1.38089 * 119.99655 * 179.97438 * 7 6 5 9 9 N 1.32272 * 119.90614 * 359.97438 * 8 7 6 10 10 C 1.31971 * 121.86422 * 179.67752 * 9 8 7 11 11 C 1.38683 * 121.44675 * 0.64038 * 10 9 8 12 12 C 1.38011 * 119.62737 * 359.39332 * 11 10 9 13 13 C 1.40999 * 118.27995 * 0.28313 * 12 11 10 14 14 C 1.41017 * 120.70670 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00518 * 204.90216 * 14 13 12 16 16 C 1.39953 * 119.99764 * 24.90457 * 14 13 12 17 17 N 1.30868 * 120.00061 * 14.50205 * 16 14 13 18 18 Si 1.86806 * 119.99768 * 194.50008 * 16 14 13 19 19 H 1.48506 * 109.47028 * 60.00056 * 18 16 14 20 20 H 1.48500 * 109.46912 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47252 * 299.99985 * 18 16 14 22 22 C 1.53177 * 109.54088 * 60.18508 * 5 3 2 23 23 C 1.53286 * 109.06399 * 176.85156 * 22 5 3 24 24 O 1.42908 * 109.45495 * 302.44237 * 23 22 5 25 25 C 1.42898 * 114.09835 * 61.16042 * 24 23 22 26 26 C 1.53096 * 109.41625 * 298.83762 * 25 24 23 27 27 H 1.09005 * 109.46882 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47006 * 299.99287 * 1 2 3 29 29 H 1.08994 * 109.47724 * 59.99709 * 1 2 3 30 30 H 1.09001 * 109.46988 * 300.00246 * 6 5 3 31 31 H 1.09000 * 109.47220 * 180.02562 * 6 5 3 32 32 H 0.96994 * 120.00190 * 0.02562 * 7 6 5 33 33 H 1.07995 * 119.27720 * 180.31231 * 10 9 8 34 34 H 1.08001 * 120.18790 * 179.67331 * 11 10 9 35 35 H 1.07992 * 120.86360 * 180.30052 * 12 11 10 36 36 H 0.97000 * 119.99483 * 180.02562 * 17 16 14 37 37 H 1.09002 * 109.52030 * 296.83705 * 22 5 3 38 38 H 1.08997 * 109.52543 * 57.02550 * 22 5 3 39 39 H 1.08991 * 109.46007 * 182.44429 * 23 22 5 40 40 H 1.08998 * 109.46636 * 62.44078 * 23 22 5 41 41 H 1.09001 * 109.48014 * 178.85467 * 25 24 23 42 42 H 1.08996 * 109.49202 * 58.82610 * 25 24 23 43 43 H 1.09000 * 109.51765 * 297.70646 * 26 25 24 44 44 H 1.08992 * 109.57779 * 177.55005 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.1157 0.5815 1.2476 7 7 3.7012 -0.8237 1.2480 8 6 4.0814 -1.6554 2.2826 9 7 4.8203 -1.1815 3.2721 10 6 5.2002 -1.9401 4.2830 11 6 4.8530 -3.2810 4.3518 12 6 4.0831 -3.8386 3.3513 13 6 3.6793 -3.0142 2.2811 14 6 2.8915 -3.5307 1.2317 15 1 2.9153 -3.0638 0.2582 16 6 2.0786 -4.6485 1.4519 17 7 1.8249 -5.0426 2.6738 18 14 1.3558 -5.5780 0.0016 19 1 2.4552 -6.0963 -0.8517 20 1 0.5376 -6.7129 0.4992 21 1 0.4997 -4.6633 -0.7955 22 6 4.1150 0.5853 -1.2534 23 6 5.6397 0.7403 -1.2831 24 8 5.9776 2.1286 -1.2541 25 6 5.5297 2.8137 -0.0828 26 6 4.0024 2.7434 -0.0049 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 3.7270 1.0752 2.1383 31 1 5.2042 0.6397 1.2462 32 1 3.1603 -1.1699 0.5211 33 1 5.7990 -1.5085 5.0714 34 1 5.1793 -3.8844 5.1860 35 1 3.7971 -4.8794 3.3872 36 1 1.2618 -5.8176 2.8263 37 1 3.8548 -0.4730 -1.2301 38 1 3.6848 1.0477 -2.1418 39 1 6.0329 0.2894 -2.1942 40 1 6.0724 0.2427 -0.4153 41 1 5.8437 3.8565 -0.1293 42 1 5.9608 2.3434 0.8009 43 1 3.5700 3.2493 -0.8681 44 1 3.6607 3.2275 0.9099 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161991644.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:31 Heat of formation + Delta-G solvation = -115.380205 kcal Electronic energy + Delta-G solvation = -28587.361805 eV Core-core repulsion = 24696.868339 eV Total energy + Delta-G solvation = -3890.493465 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.27368 -40.40633 -40.02922 -37.64571 -36.93211 -35.78760 -34.45523 -32.26235 -32.16930 -30.63427 -29.10273 -27.65651 -27.00705 -25.86746 -24.66145 -23.26191 -22.74963 -22.36497 -20.18223 -19.09841 -18.80583 -18.42806 -17.90582 -17.47421 -17.11837 -16.90973 -16.62746 -16.19873 -15.89841 -15.65647 -15.41580 -15.31578 -14.76506 -14.53821 -14.48222 -14.11579 -13.90455 -13.65615 -13.62768 -13.36815 -13.20155 -13.08585 -12.96993 -12.63895 -12.47433 -12.37643 -12.16682 -11.85416 -11.80621 -11.72871 -11.57687 -11.28295 -11.10371 -10.74591 -10.44701 -9.97383 -9.76166 -8.59139 -8.27912 -6.10780 0.96876 1.01024 1.26422 1.42843 1.52309 1.57210 1.62545 2.24664 2.68215 2.88860 2.93166 3.41468 3.46690 3.54972 3.78249 3.86888 3.93062 4.19866 4.22921 4.26289 4.29344 4.34481 4.45364 4.58640 4.63659 4.65033 4.67983 4.70593 4.75643 4.80009 4.94390 4.98355 5.01713 5.08662 5.12687 5.27838 5.31141 5.35592 5.83062 5.96775 6.15092 6.19913 6.42932 6.58449 6.79769 6.89742 6.94962 7.19045 7.95792 8.42735 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011799 B = 0.005340 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.453630 B = 5242.123677 C = 6355.089240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.356 6.356 3 C 0.473 3.527 4 O -0.529 6.529 5 C -0.059 4.059 6 C 0.160 3.840 7 N -0.718 5.718 8 C 0.300 3.700 9 N -0.544 5.544 10 C -0.002 4.002 11 C -0.199 4.199 12 C -0.150 4.150 13 C 0.002 3.998 14 C -0.469 4.469 15 H 0.081 0.919 16 C 0.035 3.965 17 N -0.833 5.833 18 Si 0.974 3.026 19 H -0.262 1.262 20 H -0.276 1.276 21 H -0.254 1.254 22 C -0.138 4.138 23 C 0.064 3.936 24 O -0.389 6.389 25 C 0.059 3.941 26 C -0.125 4.125 27 H 0.115 0.885 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.040 0.960 31 H 0.075 0.925 32 H 0.410 0.590 33 H 0.147 0.853 34 H 0.116 0.884 35 H 0.111 0.889 36 H 0.284 0.716 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.118 0.882 40 H 0.051 0.949 41 H 0.125 0.875 42 H 0.058 0.942 43 H 0.086 0.914 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.605 8.944 -8.164 12.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.272 6.272 3 C 0.317 3.683 4 O -0.419 6.419 5 C -0.060 4.060 6 C 0.035 3.965 7 N -0.360 5.360 8 C 0.061 3.939 9 N -0.263 5.263 10 C -0.154 4.154 11 C -0.221 4.221 12 C -0.177 4.177 13 C -0.005 4.005 14 C -0.501 4.501 15 H 0.099 0.901 16 C -0.178 4.178 17 N -0.460 5.460 18 Si 0.795 3.205 19 H -0.187 1.187 20 H -0.201 1.201 21 H -0.178 1.178 22 C -0.176 4.176 23 C -0.012 4.012 24 O -0.307 6.307 25 C -0.017 4.017 26 C -0.163 4.163 27 H 0.133 0.867 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.058 0.942 31 H 0.093 0.907 32 H 0.251 0.749 33 H 0.164 0.836 34 H 0.134 0.866 35 H 0.129 0.871 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.106 0.894 39 H 0.136 0.864 40 H 0.069 0.931 41 H 0.142 0.858 42 H 0.076 0.924 43 H 0.104 0.896 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.668 10.158 -8.107 13.103 hybrid contribution -1.535 -1.822 0.073 2.384 sum 0.133 8.336 -8.034 11.578 Atomic orbital electron populations 1.23463 0.75075 1.05046 1.02511 1.86520 1.24817 1.32797 1.83028 1.23885 0.92093 0.81278 0.71037 1.90603 1.67585 1.36914 1.46771 1.20996 0.86525 0.99918 0.98587 1.20995 0.99488 0.82108 0.93911 1.43880 1.59776 1.07630 1.24754 1.18679 0.97240 0.88009 0.89994 1.66668 1.16252 1.39799 1.03539 1.21881 1.05007 0.91321 0.97233 1.21644 1.03087 0.96971 1.00439 1.21424 1.00170 0.99547 0.96547 1.18262 0.95788 0.90351 0.96141 1.19328 1.21696 1.11712 0.97332 0.90137 1.26610 0.95268 0.97063 0.98891 1.69875 1.30183 1.22858 1.23052 0.85363 0.78684 0.78028 0.78392 1.18698 1.20117 1.17835 1.22261 0.98268 1.01740 0.95360 1.22667 0.92459 0.82487 1.03612 1.87914 1.78359 1.22051 1.42425 1.22795 0.91348 0.99311 0.88259 1.22086 0.98149 0.91265 1.04813 0.86696 0.92513 0.90582 0.94182 0.90673 0.74944 0.83559 0.86568 0.87066 0.90559 0.89811 0.89357 0.86397 0.93067 0.85752 0.92354 0.89569 0.89610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 10.56 113.37 1.20 2.06 16 2 O -0.36 -11.53 8.12 -51.45 -0.42 -11.94 16 3 C 0.47 14.92 6.55 71.24 0.47 15.39 16 4 O -0.53 -18.05 15.72 21.97 0.35 -17.70 16 5 C -0.06 -1.61 0.50 -52.81 -0.03 -1.64 16 6 C 0.16 5.28 4.01 86.38 0.35 5.63 16 7 N -0.72 -28.57 4.80 -343.64 -1.65 -30.22 16 8 C 0.30 14.30 7.52 134.05 1.01 15.31 16 9 N -0.54 -25.47 9.54 -191.45 -1.83 -27.29 16 10 C 0.00 -0.07 11.17 84.78 0.95 0.88 16 11 C -0.20 -9.23 10.08 22.32 0.22 -9.00 16 12 C -0.15 -7.80 8.79 22.89 0.20 -7.60 16 13 C 0.00 0.09 5.60 -21.06 -0.12 -0.03 16 14 C -0.47 -23.36 8.54 23.37 0.20 -23.16 16 15 H 0.08 3.75 6.67 -2.91 -0.02 3.73 16 16 C 0.04 1.68 5.23 85.25 0.45 2.13 16 17 N -0.83 -42.16 10.83 21.83 0.24 -41.93 16 18 Si 0.97 36.11 29.58 68.60 2.03 38.14 16 19 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 20 H -0.28 -10.01 7.11 99.48 0.71 -9.30 16 21 H -0.25 -8.87 7.11 99.48 0.71 -8.16 16 22 C -0.14 -3.35 4.74 30.75 0.15 -3.20 16 23 C 0.06 1.45 6.57 72.08 0.47 1.92 16 24 O -0.39 -8.97 10.77 -148.98 -1.60 -10.57 16 25 C 0.06 1.19 6.57 72.01 0.47 1.67 16 26 C -0.12 -2.87 4.23 30.69 0.13 -2.74 16 27 H 0.11 2.77 8.14 -2.38 -0.02 2.75 16 28 H 0.06 1.54 8.13 -2.39 -0.02 1.52 16 29 H 0.08 1.74 8.13 -2.39 -0.02 1.72 16 30 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.08 2.42 5.01 -2.39 -0.01 2.41 16 32 H 0.41 16.07 3.55 -92.71 -0.33 15.74 16 33 H 0.15 5.52 8.06 -2.91 -0.02 5.50 16 34 H 0.12 4.70 8.06 -2.91 -0.02 4.68 16 35 H 0.11 6.02 6.17 -2.91 -0.02 6.00 16 36 H 0.28 13.20 8.30 -92.71 -0.77 12.43 16 37 H 0.08 2.19 6.81 -2.39 -0.02 2.17 16 38 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.05 1.30 6.60 -2.39 -0.02 1.28 16 41 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.06 1.22 6.60 -2.39 -0.02 1.20 16 43 H 0.09 1.96 8.03 -2.39 -0.02 1.94 16 44 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -61.78 350.28 3.93 -57.85 By element: Atomic # 1 Polarization: 45.35 SS G_CDS: 0.70 Total: 46.05 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: 6.11 Total: -2.39 kcal Atomic # 7 Polarization: -96.20 SS G_CDS: -3.24 Total: -99.44 kcal Atomic # 8 Polarization: -38.54 SS G_CDS: -1.68 Total: -40.22 kcal Atomic # 14 Polarization: 36.11 SS G_CDS: 2.03 Total: 38.14 kcal Total: -61.78 3.93 -57.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161991644.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.532 kcal (2) G-P(sol) polarization free energy of solvation -61.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds