Wall clock time and date at job start Tue Mar 31 2020 12:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34230 * 116.99424 * 2 1 4 4 O 1.20831 * 120.00424 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99633 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.54141 * 299.99694 * 5 3 2 7 7 N 1.46502 * 109.47052 * 60.00462 * 6 5 3 8 8 C 1.38820 * 120.00010 * 179.97438 * 7 6 5 9 9 C 1.39803 * 119.58295 * 359.97438 * 8 7 6 10 10 C 1.38598 * 119.48881 * 179.97438 * 9 8 7 11 11 C 1.38393 * 118.67941 * 0.25920 * 10 9 8 12 12 C 1.40547 * 119.14706 * 359.47912 * 11 10 9 13 13 C 1.41324 * 119.78258 * 180.25227 * 12 11 10 14 14 H 1.08001 * 119.99729 * 0.27110 * 13 12 11 15 15 C 1.40017 * 120.00293 * 180.27361 * 13 12 11 16 16 N 1.30750 * 120.00116 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00323 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47382 * 89.99712 * 17 15 13 19 19 H 1.48501 * 109.47313 * 210.00151 * 17 15 13 20 20 H 1.48508 * 109.47126 * 329.99826 * 17 15 13 21 21 N 1.31950 * 119.58604 * 179.97438 * 8 7 6 22 22 C 1.53171 * 109.54606 * 60.17866 * 5 3 2 23 23 C 1.53285 * 109.06589 * 176.85352 * 22 5 3 24 24 O 1.42901 * 109.45759 * 302.44383 * 23 22 5 25 25 C 1.42902 * 114.09979 * 61.15615 * 24 23 22 26 26 C 1.53090 * 109.41535 * 298.84188 * 25 24 23 27 27 H 1.09002 * 109.46757 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46849 * 299.99766 * 1 2 3 29 29 H 1.08998 * 109.47496 * 59.99856 * 1 2 3 30 30 H 1.09003 * 109.47253 * 299.99971 * 6 5 3 31 31 H 1.09003 * 109.46690 * 180.02562 * 6 5 3 32 32 H 0.96996 * 119.99993 * 359.97438 * 7 6 5 33 33 H 1.08000 * 120.25538 * 0.02562 * 9 8 7 34 34 H 1.08002 * 120.65587 * 179.97438 * 10 9 8 35 35 H 1.07994 * 120.42073 * 179.74187 * 11 10 9 36 36 H 0.96995 * 120.00538 * 180.02562 * 16 15 13 37 37 H 1.08999 * 109.52114 * 296.84012 * 22 5 3 38 38 H 1.09001 * 109.52665 * 57.02730 * 22 5 3 39 39 H 1.08995 * 109.45924 * 182.44588 * 23 22 5 40 40 H 1.08997 * 109.46718 * 62.44223 * 23 22 5 41 41 H 1.09001 * 109.48343 * 178.85629 * 25 24 23 42 42 H 1.09002 * 109.48853 * 58.83094 * 25 24 23 43 43 H 1.08997 * 109.52651 * 297.70372 * 26 25 24 44 44 H 1.09001 * 109.57048 * 177.54230 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.1156 0.5817 1.2478 7 7 3.7012 -0.8235 1.2482 8 6 4.0834 -1.6596 2.2884 9 6 4.8641 -1.1516 3.3309 10 6 5.2441 -1.9879 4.3688 11 6 4.8400 -3.3112 4.3374 12 6 4.0512 -3.7608 3.2645 13 6 3.6266 -5.1080 3.2217 14 1 3.9047 -5.7872 4.0140 15 6 2.8454 -5.5623 2.1522 16 7 2.5084 -4.7399 1.1932 17 14 2.2848 -7.3432 2.0952 18 1 0.9749 -7.4720 2.7826 19 1 2.1460 -7.7735 0.6807 20 1 3.2880 -8.2000 2.7770 21 7 3.7051 -2.9237 2.2808 22 6 4.1151 0.5852 -1.2532 23 6 5.6398 0.7403 -1.2829 24 8 5.9777 2.1285 -1.2539 25 6 5.5297 2.8138 -0.0827 26 6 4.0023 2.7434 -0.0049 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 3.7268 1.0754 2.1384 31 1 5.2041 0.6398 1.2464 32 1 3.1598 -1.1697 0.5216 33 1 5.1681 -0.1153 3.3280 34 1 5.8475 -1.6154 5.1834 35 1 5.1236 -3.9884 5.1293 36 1 1.9669 -5.0544 0.4524 37 1 3.8549 -0.4730 -1.2299 38 1 3.6850 1.0475 -2.1417 39 1 6.0330 0.2894 -2.1939 40 1 6.0725 0.2428 -0.4149 41 1 5.8436 3.8566 -0.1292 42 1 5.9607 2.3436 0.8011 43 1 3.5699 3.2492 -0.8682 44 1 3.6606 3.2276 0.9099 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161995722.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:35 Heat of formation + Delta-G solvation = -90.483325 kcal Electronic energy + Delta-G solvation = -28182.785099 eV Core-core repulsion = 24293.371244 eV Total energy + Delta-G solvation = -3889.413856 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.16669 -39.26289 -38.16844 -36.47003 -35.79395 -33.77184 -32.73869 -31.29664 -30.37344 -29.00723 -28.02478 -26.31437 -25.34321 -24.72102 -23.73365 -21.69102 -21.47418 -20.49649 -19.08624 -17.63239 -17.39631 -17.09945 -16.51334 -16.05877 -16.02133 -15.40496 -15.03788 -14.93414 -14.71952 -14.41008 -14.09045 -13.81450 -13.57881 -13.11756 -12.92416 -12.87853 -12.73068 -12.51752 -12.15668 -11.96374 -11.83725 -11.48209 -11.37051 -11.19555 -10.99223 -10.88614 -10.73440 -10.67861 -10.55017 -10.43359 -10.31868 -9.92235 -9.63866 -9.45382 -8.89217 -7.91132 -7.50424 -6.52566 -6.32489 -4.47415 2.18468 2.69646 2.87153 3.10553 3.13793 3.23564 3.29486 3.76663 3.94925 3.98380 4.44258 4.46658 4.66805 4.79606 4.81853 4.84232 5.09183 5.19247 5.20616 5.27689 5.37483 5.47600 5.56430 5.62113 5.64424 5.68981 5.76830 5.91047 5.94935 6.03592 6.08736 6.14962 6.43675 6.54846 6.86016 6.88178 6.92266 7.06102 7.24961 7.59385 7.74453 7.80096 7.90916 8.18157 8.35287 8.70856 8.80273 9.12309 10.24725 10.40390 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013946 B = 0.004223 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.276234 B = 6628.000767 C = 7465.731831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.340 6.340 3 C 0.475 3.525 4 O -0.512 6.512 5 C -0.061 4.061 6 C 0.149 3.851 7 N -0.734 5.734 8 C 0.413 3.587 9 C -0.370 4.370 10 C -0.031 4.031 11 C -0.316 4.316 12 C 0.293 3.707 13 C -0.434 4.434 14 H 0.082 0.918 15 C 0.072 3.928 16 N -0.713 5.713 17 Si 0.903 3.097 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.262 1.262 21 N -0.528 5.528 22 C -0.143 4.143 23 C 0.061 3.939 24 O -0.382 6.382 25 C 0.059 3.941 26 C -0.131 4.131 27 H 0.105 0.895 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.403 0.597 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.269 0.731 37 H 0.095 0.905 38 H 0.076 0.924 39 H 0.100 0.900 40 H 0.064 0.936 41 H 0.100 0.900 42 H 0.059 0.941 43 H 0.084 0.916 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.577 10.636 -5.897 12.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.255 6.255 3 C 0.318 3.682 4 O -0.400 6.400 5 C -0.063 4.063 6 C 0.023 3.977 7 N -0.374 5.374 8 C 0.173 3.827 9 C -0.396 4.396 10 C -0.056 4.056 11 C -0.340 4.340 12 C 0.166 3.834 13 C -0.466 4.466 14 H 0.100 0.900 15 C -0.153 4.153 16 N -0.335 5.335 17 Si 0.728 3.272 18 H -0.196 1.196 19 H -0.203 1.203 20 H -0.186 1.186 21 N -0.249 5.249 22 C -0.181 4.181 23 C -0.015 4.015 24 O -0.300 6.300 25 C -0.018 4.018 26 C -0.169 4.169 27 H 0.123 0.877 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.242 0.758 33 H 0.106 0.894 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.080 0.920 37 H 0.113 0.887 38 H 0.095 0.905 39 H 0.118 0.882 40 H 0.082 0.918 41 H 0.118 0.882 42 H 0.077 0.923 43 H 0.103 0.897 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.094 10.846 -6.853 12.830 hybrid contribution -0.497 -0.613 0.733 1.077 sum -0.590 10.233 -6.120 11.938 Atomic orbital electron populations 1.23269 0.76199 1.04117 1.01863 1.86549 1.23448 1.32394 1.83096 1.23489 0.91368 0.81630 0.71714 1.90629 1.67045 1.36522 1.45851 1.20905 0.87860 0.98591 0.98894 1.21126 0.99202 0.83384 0.93980 1.44213 1.60257 1.06643 1.26303 1.18466 0.89104 0.89426 0.85679 1.20598 1.17850 0.99411 1.01732 1.20584 0.95800 0.93635 0.95546 1.21534 1.12661 0.95943 1.03819 1.18192 0.87084 0.92297 0.85846 1.19575 1.27093 0.94049 1.05903 0.89968 1.26028 0.95192 0.99006 0.95070 1.70158 1.22900 1.34630 1.05822 0.86407 0.79787 0.82851 0.78198 1.19568 1.20264 1.18624 1.68206 1.28492 0.99900 1.28340 1.22276 0.97636 1.02569 0.95609 1.22662 0.93171 0.82383 1.03318 1.87927 1.78281 1.22044 1.41783 1.22669 0.92320 0.98077 0.88720 1.22099 0.97285 0.92781 1.04780 0.87688 0.92083 0.92283 0.92483 0.91188 0.75845 0.89429 0.89026 0.88779 0.92002 0.88699 0.90521 0.88190 0.91768 0.88236 0.92278 0.89697 0.89637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.56 101.05 1.07 1.57 16 2 O -0.34 -5.34 8.12 -39.26 -0.32 -5.66 16 3 C 0.48 7.24 6.55 36.01 0.24 7.48 16 4 O -0.51 -8.51 15.72 -18.75 -0.29 -8.80 16 5 C -0.06 -0.80 0.50 -155.48 -0.08 -0.88 16 6 C 0.15 2.27 3.21 -4.04 -0.01 2.26 16 7 N -0.73 -14.17 4.91 -60.39 -0.30 -14.46 16 8 C 0.41 9.81 7.65 -155.33 -1.19 8.62 16 9 C -0.37 -8.33 9.34 -38.86 -0.36 -8.70 16 10 C -0.03 -0.71 10.15 -39.39 -0.40 -1.11 16 11 C -0.32 -7.93 9.83 -38.65 -0.38 -8.31 16 12 C 0.29 8.03 6.55 -85.00 -0.56 7.48 16 13 C -0.43 -11.61 9.14 -37.74 -0.34 -11.95 16 14 H 0.08 2.07 7.85 -52.49 -0.41 1.66 16 15 C 0.07 1.82 5.50 -17.35 -0.10 1.72 16 16 N -0.71 -18.51 11.46 55.55 0.64 -17.87 16 17 Si 0.90 18.45 29.56 -169.99 -5.02 13.42 16 18 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 19 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 20 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 21 N -0.53 -14.26 7.89 -10.33 -0.08 -14.34 16 22 C -0.14 -1.75 4.74 -26.50 -0.13 -1.88 16 23 C 0.06 0.71 6.57 37.30 0.25 0.96 16 24 O -0.38 -4.57 10.77 -35.23 -0.38 -4.95 16 25 C 0.06 0.60 6.57 37.20 0.24 0.84 16 26 C -0.13 -1.47 4.23 -26.59 -0.11 -1.59 16 27 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 28 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 29 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 30 H 0.06 0.90 7.92 -51.93 -0.41 0.48 16 31 H 0.07 1.01 4.78 -51.93 -0.25 0.76 16 32 H 0.40 7.96 5.47 -40.82 -0.22 7.73 16 33 H 0.09 1.74 6.68 -52.49 -0.35 1.39 16 34 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 35 H 0.09 2.20 8.06 -52.49 -0.42 1.78 16 36 H 0.27 6.33 8.29 -40.82 -0.34 5.99 16 37 H 0.09 1.27 6.81 -51.93 -0.35 0.92 16 38 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.06 0.81 6.60 -51.93 -0.34 0.46 16 41 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.58 6.60 -51.93 -0.34 0.24 16 43 H 0.08 0.98 8.03 -51.93 -0.42 0.56 16 44 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 352.94 15.07 5.32 5.32 Total: -1.00 -30.89 352.94 -8.35 -39.24 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -6.04 Total: 11.60 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -1.86 Total: -3.49 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: 0.26 Total: -46.67 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.99 Total: -19.41 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.02 Total: 13.42 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.89 -8.35 -39.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161995722.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.246 kcal (2) G-P(sol) polarization free energy of solvation -30.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds