Wall clock time and date at job start Tue Mar 31 2020 12:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34230 * 116.99424 * 2 1 4 4 O 1.20831 * 120.00424 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99633 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.54141 * 299.99694 * 5 3 2 7 7 N 1.46502 * 109.47052 * 60.00462 * 6 5 3 8 8 C 1.38820 * 120.00010 * 179.97438 * 7 6 5 9 9 C 1.39803 * 119.58295 * 359.97438 * 8 7 6 10 10 C 1.38598 * 119.48881 * 179.97438 * 9 8 7 11 11 C 1.38393 * 118.67941 * 0.25920 * 10 9 8 12 12 C 1.40547 * 119.14706 * 359.47912 * 11 10 9 13 13 C 1.41324 * 119.78258 * 180.25227 * 12 11 10 14 14 H 1.08001 * 119.99729 * 0.27110 * 13 12 11 15 15 C 1.40017 * 120.00293 * 180.27361 * 13 12 11 16 16 N 1.30750 * 120.00116 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00323 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47382 * 89.99712 * 17 15 13 19 19 H 1.48501 * 109.47313 * 210.00151 * 17 15 13 20 20 H 1.48508 * 109.47126 * 329.99826 * 17 15 13 21 21 N 1.31950 * 119.58604 * 179.97438 * 8 7 6 22 22 C 1.53171 * 109.54606 * 60.17866 * 5 3 2 23 23 C 1.53285 * 109.06589 * 176.85352 * 22 5 3 24 24 O 1.42901 * 109.45759 * 302.44383 * 23 22 5 25 25 C 1.42902 * 114.09979 * 61.15615 * 24 23 22 26 26 C 1.53090 * 109.41535 * 298.84188 * 25 24 23 27 27 H 1.09002 * 109.46757 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46849 * 299.99766 * 1 2 3 29 29 H 1.08998 * 109.47496 * 59.99856 * 1 2 3 30 30 H 1.09003 * 109.47253 * 299.99971 * 6 5 3 31 31 H 1.09003 * 109.46690 * 180.02562 * 6 5 3 32 32 H 0.96996 * 119.99993 * 359.97438 * 7 6 5 33 33 H 1.08000 * 120.25538 * 0.02562 * 9 8 7 34 34 H 1.08002 * 120.65587 * 179.97438 * 10 9 8 35 35 H 1.07994 * 120.42073 * 179.74187 * 11 10 9 36 36 H 0.96995 * 120.00538 * 180.02562 * 16 15 13 37 37 H 1.08999 * 109.52114 * 296.84012 * 22 5 3 38 38 H 1.09001 * 109.52665 * 57.02730 * 22 5 3 39 39 H 1.08995 * 109.45924 * 182.44588 * 23 22 5 40 40 H 1.08997 * 109.46718 * 62.44223 * 23 22 5 41 41 H 1.09001 * 109.48343 * 178.85629 * 25 24 23 42 42 H 1.09002 * 109.48853 * 58.83094 * 25 24 23 43 43 H 1.08997 * 109.52651 * 297.70372 * 26 25 24 44 44 H 1.09001 * 109.57048 * 177.54230 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.1156 0.5817 1.2478 7 7 3.7012 -0.8235 1.2482 8 6 4.0834 -1.6596 2.2884 9 6 4.8641 -1.1516 3.3309 10 6 5.2441 -1.9879 4.3688 11 6 4.8400 -3.3112 4.3374 12 6 4.0512 -3.7608 3.2645 13 6 3.6266 -5.1080 3.2217 14 1 3.9047 -5.7872 4.0140 15 6 2.8454 -5.5623 2.1522 16 7 2.5084 -4.7399 1.1932 17 14 2.2848 -7.3432 2.0952 18 1 0.9749 -7.4720 2.7826 19 1 2.1460 -7.7735 0.6807 20 1 3.2880 -8.2000 2.7770 21 7 3.7051 -2.9237 2.2808 22 6 4.1151 0.5852 -1.2532 23 6 5.6398 0.7403 -1.2829 24 8 5.9777 2.1285 -1.2539 25 6 5.5297 2.8138 -0.0827 26 6 4.0023 2.7434 -0.0049 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 3.7268 1.0754 2.1384 31 1 5.2041 0.6398 1.2464 32 1 3.1598 -1.1697 0.5216 33 1 5.1681 -0.1153 3.3280 34 1 5.8475 -1.6154 5.1834 35 1 5.1236 -3.9884 5.1293 36 1 1.9669 -5.0544 0.4524 37 1 3.8549 -0.4730 -1.2299 38 1 3.6850 1.0475 -2.1417 39 1 6.0330 0.2894 -2.1939 40 1 6.0725 0.2428 -0.4149 41 1 5.8436 3.8566 -0.1292 42 1 5.9607 2.3436 0.8011 43 1 3.5699 3.2492 -0.8682 44 1 3.6606 3.2276 0.9099 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161995722.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:34 Heat of formation + Delta-G solvation = -108.504794 kcal Electronic energy + Delta-G solvation = -28183.566569 eV Core-core repulsion = 24293.371244 eV Total energy + Delta-G solvation = -3890.195325 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.30834 -40.37939 -39.89459 -37.67276 -37.13001 -35.44788 -34.26642 -32.22506 -32.21047 -30.70128 -29.13819 -27.57410 -27.15255 -25.91660 -24.67430 -23.30682 -22.76865 -22.24628 -20.23182 -19.25121 -18.76699 -18.33627 -17.82485 -17.44861 -16.96327 -16.71395 -16.49127 -16.23672 -16.03125 -15.86750 -15.38937 -15.27947 -14.91901 -14.48727 -14.40856 -14.17622 -13.95736 -13.70086 -13.58862 -13.38607 -13.04805 -12.83434 -12.70896 -12.61459 -12.43183 -12.39120 -12.21319 -11.87757 -11.83119 -11.74776 -11.69384 -11.31951 -11.25660 -10.69036 -10.47489 -9.79224 -9.39711 -8.26640 -8.18656 -6.43936 0.98056 1.09462 1.38485 1.43570 1.55655 1.59852 1.60704 2.27270 2.54747 2.91868 2.96184 3.35738 3.43068 3.49393 3.74987 3.90919 4.07675 4.17188 4.20072 4.23682 4.25286 4.40195 4.42521 4.47682 4.60609 4.61755 4.63596 4.71537 4.77964 4.80611 4.96867 5.00916 5.03256 5.03863 5.08785 5.15687 5.28848 5.40402 5.75015 5.99677 6.08680 6.19278 6.26607 6.54795 6.58332 6.88421 6.98828 7.26739 8.38730 8.54932 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013946 B = 0.004223 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.276234 B = 6628.000767 C = 7465.731831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.358 6.358 3 C 0.472 3.528 4 O -0.528 6.528 5 C -0.055 4.055 6 C 0.150 3.850 7 N -0.726 5.726 8 C 0.398 3.602 9 C -0.369 4.369 10 C -0.029 4.029 11 C -0.345 4.345 12 C 0.261 3.739 13 C -0.472 4.472 14 H 0.083 0.917 15 C 0.029 3.971 16 N -0.746 5.746 17 Si 0.981 3.019 18 H -0.265 1.265 19 H -0.268 1.268 20 H -0.259 1.259 21 N -0.560 5.560 22 C -0.139 4.139 23 C 0.065 3.935 24 O -0.389 6.389 25 C 0.057 3.943 26 C -0.126 4.126 27 H 0.113 0.887 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.085 0.915 32 H 0.400 0.600 33 H 0.118 0.882 34 H 0.127 0.873 35 H 0.099 0.901 36 H 0.276 0.724 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.114 0.886 40 H 0.054 0.946 41 H 0.125 0.875 42 H 0.064 0.936 43 H 0.084 0.916 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.094 11.572 -6.252 13.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.273 6.273 3 C 0.316 3.684 4 O -0.417 6.417 5 C -0.056 4.056 6 C 0.025 3.975 7 N -0.365 5.365 8 C 0.158 3.842 9 C -0.395 4.395 10 C -0.053 4.053 11 C -0.368 4.368 12 C 0.134 3.866 13 C -0.504 4.504 14 H 0.102 0.898 15 C -0.193 4.193 16 N -0.368 5.368 17 Si 0.802 3.198 18 H -0.190 1.190 19 H -0.193 1.193 20 H -0.183 1.183 21 N -0.283 5.283 22 C -0.176 4.176 23 C -0.012 4.012 24 O -0.308 6.308 25 C -0.019 4.019 26 C -0.164 4.164 27 H 0.132 0.868 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.102 0.898 32 H 0.238 0.762 33 H 0.136 0.864 34 H 0.145 0.855 35 H 0.118 0.882 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.132 0.868 40 H 0.072 0.928 41 H 0.143 0.857 42 H 0.082 0.918 43 H 0.103 0.897 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.433 11.827 -7.214 13.861 hybrid contribution -0.658 -0.753 0.842 1.307 sum -0.224 11.074 -6.373 12.779 Atomic orbital electron populations 1.23447 0.75040 1.04975 1.02503 1.86542 1.24857 1.32904 1.83010 1.23891 0.92140 0.81232 0.71119 1.90613 1.67583 1.36867 1.46681 1.20948 0.86455 0.99944 0.98265 1.21299 1.00060 0.81115 0.95053 1.44320 1.59491 1.07751 1.24930 1.18885 0.89131 0.89215 0.87012 1.20953 1.16755 1.00791 1.00956 1.20986 0.95196 0.92747 0.96410 1.21681 1.13780 0.97414 1.03952 1.18638 0.88004 0.93094 0.86890 1.19907 1.28824 0.94500 1.07139 0.89841 1.26864 0.94696 1.03560 0.94154 1.70243 1.23376 1.36789 1.06395 0.85232 0.79180 0.76867 0.78515 1.19026 1.19271 1.18253 1.68174 1.29792 1.01333 1.28951 1.22243 0.98321 1.01578 0.95509 1.22645 0.92352 0.82550 1.03631 1.87930 1.78323 1.21934 1.42637 1.22844 0.91273 0.99424 0.88349 1.22112 0.98193 0.90964 1.05099 0.86820 0.92355 0.90729 0.92526 0.89754 0.76246 0.86431 0.85496 0.88248 0.91384 0.90195 0.89605 0.86805 0.92777 0.85718 0.91818 0.89727 0.89047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 10.56 113.37 1.20 2.06 16 2 O -0.36 -11.24 8.12 -51.42 -0.42 -11.66 16 3 C 0.47 14.07 6.55 71.24 0.47 14.53 16 4 O -0.53 -17.06 15.72 21.95 0.35 -16.72 16 5 C -0.05 -1.37 0.50 -52.81 -0.03 -1.39 16 6 C 0.15 4.33 3.21 86.38 0.28 4.61 16 7 N -0.73 -27.88 4.91 -344.97 -1.69 -29.57 16 8 C 0.40 18.94 7.65 133.42 1.02 19.96 16 9 C -0.37 -16.12 9.34 22.73 0.21 -15.90 16 10 C -0.03 -1.30 10.15 22.39 0.23 -1.07 16 11 C -0.35 -17.51 9.83 22.87 0.22 -17.29 16 12 C 0.26 14.72 6.55 40.18 0.26 14.99 16 13 C -0.47 -26.00 9.14 23.46 0.21 -25.79 16 14 H 0.08 4.35 7.85 -2.91 -0.02 4.33 16 15 C 0.03 1.50 5.50 85.29 0.47 1.97 16 16 N -0.75 -39.57 11.46 21.84 0.25 -39.32 16 17 Si 0.98 38.24 29.56 68.60 2.03 40.26 16 18 H -0.27 -10.03 7.11 99.48 0.71 -9.33 16 19 H -0.27 -9.93 7.11 99.48 0.71 -9.22 16 20 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 21 N -0.56 -30.95 7.89 -186.59 -1.47 -32.42 16 22 C -0.14 -3.24 4.74 30.75 0.15 -3.09 16 23 C 0.06 1.39 6.57 72.08 0.47 1.87 16 24 O -0.39 -8.35 10.77 -148.98 -1.60 -9.95 16 25 C 0.06 1.00 6.57 72.01 0.47 1.47 16 26 C -0.13 -2.54 4.23 30.69 0.13 -2.41 16 27 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 28 H 0.06 1.51 8.13 -2.39 -0.02 1.49 16 29 H 0.07 1.65 8.13 -2.39 -0.02 1.63 16 30 H 0.06 1.67 7.92 -2.39 -0.02 1.65 16 31 H 0.08 2.25 4.78 -2.39 -0.01 2.23 16 32 H 0.40 15.98 5.47 -92.71 -0.51 15.47 16 33 H 0.12 4.34 6.68 -2.91 -0.02 4.32 16 34 H 0.13 4.64 8.06 -2.91 -0.02 4.62 16 35 H 0.10 4.74 8.06 -2.91 -0.02 4.72 16 36 H 0.28 13.19 8.29 -92.71 -0.77 12.42 16 37 H 0.08 2.13 6.81 -2.39 -0.02 2.11 16 38 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.05 1.27 6.60 -2.39 -0.02 1.26 16 41 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.06 1.06 6.60 -2.39 -0.02 1.05 16 43 H 0.08 1.76 8.03 -2.39 -0.02 1.74 16 44 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -67.36 352.94 3.73 -63.64 By element: Atomic # 1 Polarization: 40.71 SS G_CDS: 0.52 Total: 41.23 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: 5.77 Total: -5.49 kcal Atomic # 7 Polarization: -98.40 SS G_CDS: -2.92 Total: -101.31 kcal Atomic # 8 Polarization: -36.65 SS G_CDS: -1.68 Total: -38.33 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 2.03 Total: 40.26 kcal Total: -67.36 3.73 -63.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161995722.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.867 kcal (2) G-P(sol) polarization free energy of solvation -67.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds