Wall clock time and date at job start Tue Mar 31 2020 12:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34231 * 117.00073 * 2 1 4 4 O 1.20829 * 119.99938 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00082 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.54677 * 300.00243 * 5 3 2 7 7 N 1.46492 * 109.47174 * 59.99364 * 6 5 3 8 8 C 1.39726 * 119.99860 * 180.02562 * 7 6 5 9 9 C 1.39331 * 120.36299 * 0.02562 * 8 7 6 10 10 N 1.31987 * 121.20403 * 180.02562 * 9 8 7 11 11 C 1.31490 * 122.06258 * 359.97438 * 10 9 8 12 12 C 1.40766 * 120.56355 * 0.02589 * 11 10 9 13 13 C 1.41420 * 120.62172 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99729 * 23.37477 * 13 12 11 15 15 C 1.39933 * 120.00239 * 203.36499 * 13 12 11 16 16 N 1.30828 * 119.99745 * 17.35253 * 15 13 12 17 17 Si 1.86796 * 120.00081 * 197.35440 * 15 13 12 18 18 H 1.48503 * 109.47317 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47305 * 120.00115 * 17 15 13 20 20 H 1.48499 * 109.47012 * 240.00040 * 17 15 13 21 21 C 1.38664 * 120.36017 * 179.72751 * 8 7 6 22 22 C 1.53179 * 109.54395 * 60.17649 * 5 3 2 23 23 C 1.53279 * 109.06843 * 176.85345 * 22 5 3 24 24 O 1.42906 * 109.45603 * 302.44515 * 23 22 5 25 25 C 1.42907 * 114.09915 * 61.15902 * 24 23 22 26 26 C 1.53094 * 109.41296 * 298.83823 * 25 24 23 27 27 H 1.09004 * 109.47224 * 300.00292 * 1 2 3 28 28 H 1.08997 * 109.46711 * 60.00097 * 1 2 3 29 29 H 1.08999 * 109.47091 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46605 * 299.99821 * 6 5 3 31 31 H 1.08995 * 109.47104 * 180.02562 * 6 5 3 32 32 H 0.97000 * 120.00468 * 0.02562 * 7 6 5 33 33 H 1.07996 * 119.39771 * 0.02562 * 9 8 7 34 34 H 1.07995 * 119.71943 * 180.02562 * 11 10 9 35 35 H 0.97003 * 119.99816 * 180.02562 * 16 15 13 36 36 H 1.07996 * 120.92865 * 359.97438 * 21 8 7 37 37 H 1.09007 * 109.52355 * 296.84392 * 22 5 3 38 38 H 1.09000 * 109.52458 * 57.02922 * 22 5 3 39 39 H 1.08996 * 109.45925 * 182.44834 * 23 22 5 40 40 H 1.08999 * 109.46582 * 62.44401 * 23 22 5 41 41 H 1.08997 * 109.47847 * 178.85820 * 25 24 23 42 42 H 1.09000 * 109.49042 * 58.82672 * 25 24 23 43 43 H 1.09003 * 109.52339 * 297.70407 * 26 25 24 44 44 H 1.08992 * 109.57084 * 177.54264 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.1148 0.5819 1.2496 7 7 3.7002 -0.8231 1.2503 8 6 4.0832 -1.6640 2.2984 9 6 4.8589 -1.1739 3.3470 10 7 5.2304 -1.9535 4.3451 11 6 4.8912 -3.2225 4.4032 12 6 4.1086 -3.8015 3.3865 13 6 3.7435 -5.1664 3.4474 14 1 3.7194 -5.6770 4.3989 15 6 3.4133 -5.8554 2.2751 16 7 3.7577 -5.3681 1.1109 17 14 2.4806 -7.4710 2.3725 18 1 2.2119 -7.8025 3.7948 19 1 1.1942 -7.3447 1.6415 20 1 3.2949 -8.5504 1.7584 21 6 3.6903 -2.9937 2.3095 22 6 4.1161 0.5845 -1.2514 23 6 5.6408 0.7395 -1.2800 24 8 5.9788 2.1277 -1.2514 25 6 5.5299 2.8135 -0.0808 26 6 4.0025 2.7432 -0.0041 27 1 -0.3634 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.7253 1.0761 2.1397 31 1 5.2031 0.6401 1.2490 32 1 3.1598 -1.1698 0.5232 33 1 5.1616 -0.1372 3.3430 34 1 5.2159 -3.8258 5.2380 35 1 3.5285 -5.8455 0.2982 36 1 3.0846 -3.4002 1.5131 37 1 3.8558 -0.4738 -1.2279 38 1 3.6867 1.0464 -2.1404 39 1 6.0346 0.2881 -2.1906 40 1 6.0728 0.2422 -0.4115 41 1 5.8439 3.8562 -0.1276 42 1 5.9603 2.3436 0.8036 43 1 3.5707 3.2488 -0.8679 44 1 3.6602 3.2278 0.9103 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161999212.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:38 Heat of formation + Delta-G solvation = -105.488382 kcal Electronic energy + Delta-G solvation = -28035.997799 eV Core-core repulsion = 24145.933275 eV Total energy + Delta-G solvation = -3890.064524 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.25816 -39.34240 -38.33165 -36.59474 -35.91384 -34.03735 -33.34346 -31.35080 -30.29264 -28.83992 -28.06466 -26.15974 -25.65163 -24.60692 -23.75376 -21.82493 -21.77981 -20.62718 -19.17460 -17.68171 -17.47301 -17.02369 -16.60410 -16.10256 -15.93055 -15.52958 -15.29996 -15.02885 -14.97070 -14.77496 -14.21009 -13.95343 -13.64957 -13.19376 -13.03135 -12.90717 -12.89292 -12.56698 -12.26070 -12.01439 -11.70728 -11.54323 -11.51364 -11.38118 -11.19670 -11.02188 -10.92188 -10.83877 -10.69406 -10.53397 -10.38802 -9.89636 -9.71721 -9.43597 -9.32742 -8.06090 -7.76194 -6.86020 -6.40559 -4.47438 2.08275 2.57179 2.71969 3.02755 3.08262 3.11349 3.23712 3.73383 3.86837 3.92078 4.38550 4.39807 4.58861 4.65268 4.72911 4.76179 5.05038 5.06482 5.13333 5.16490 5.31176 5.42903 5.49806 5.52542 5.56845 5.64215 5.69180 5.80813 5.85433 5.89432 5.99038 6.12077 6.30641 6.55294 6.64564 6.89252 7.02843 7.08640 7.15703 7.55887 7.62469 7.71483 7.96626 8.18842 8.47078 8.61339 8.75598 8.86849 9.75209 10.09100 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014017 B = 0.004014 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.166046 B = 6973.701418 C = 7675.081779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.346 6.346 3 C 0.476 3.524 4 O -0.509 6.509 5 C -0.061 4.061 6 C 0.143 3.857 7 N -0.750 5.750 8 C 0.176 3.824 9 C -0.100 4.100 10 N -0.445 5.445 11 C -0.052 4.052 12 C 0.096 3.904 13 C -0.451 4.451 14 H 0.082 0.918 15 C 0.077 3.923 16 N -0.787 5.787 17 Si 0.908 3.092 18 H -0.259 1.259 19 H -0.272 1.272 20 H -0.274 1.274 21 C -0.207 4.207 22 C -0.142 4.142 23 C 0.061 3.939 24 O -0.381 6.381 25 C 0.059 3.941 26 C -0.132 4.132 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.103 0.897 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.397 0.603 33 H 0.112 0.888 34 H 0.122 0.878 35 H 0.280 0.720 36 H 0.126 0.874 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.100 0.900 40 H 0.065 0.935 41 H 0.100 0.900 42 H 0.060 0.940 43 H 0.084 0.916 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.632 10.385 -7.677 13.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.262 6.262 3 C 0.319 3.681 4 O -0.397 6.397 5 C -0.062 4.062 6 C 0.017 3.983 7 N -0.387 5.387 8 C 0.075 3.925 9 C -0.259 4.259 10 N -0.153 5.153 11 C -0.216 4.216 12 C 0.090 3.910 13 C -0.481 4.481 14 H 0.100 0.900 15 C -0.142 4.142 16 N -0.412 5.412 17 Si 0.732 3.268 18 H -0.183 1.183 19 H -0.198 1.198 20 H -0.199 1.199 21 C -0.237 4.237 22 C -0.180 4.180 23 C -0.016 4.016 24 O -0.300 6.300 25 C -0.018 4.018 26 C -0.170 4.170 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.122 0.878 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.235 0.765 33 H 0.129 0.871 34 H 0.140 0.860 35 H 0.091 0.909 36 H 0.143 0.857 37 H 0.111 0.889 38 H 0.095 0.905 39 H 0.118 0.882 40 H 0.083 0.917 41 H 0.118 0.882 42 H 0.078 0.922 43 H 0.103 0.897 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.181 11.261 -7.372 13.635 hybrid contribution -1.694 -1.343 -0.840 2.319 sum -3.875 9.918 -8.212 13.447 Atomic orbital electron populations 1.23285 0.76194 1.04024 1.02174 1.86498 1.23473 1.32821 1.83391 1.23509 0.91382 0.81510 0.71690 1.90638 1.67021 1.36441 1.45604 1.20913 0.87637 0.98733 0.98947 1.21171 0.99346 0.83840 0.93953 1.44435 1.61094 1.07055 1.26125 1.18638 0.95003 0.90624 0.88197 1.21196 1.11027 0.98607 0.95080 1.66810 1.18876 1.06163 1.23403 1.22323 1.05687 0.91364 1.02261 1.18269 0.88222 0.93568 0.90892 1.19583 1.39465 0.94774 0.94255 0.89998 1.25932 0.93649 0.99728 0.94843 1.69841 1.34135 1.38286 0.98894 0.86269 0.79679 0.81021 0.79843 1.18264 1.19752 1.19942 1.21070 1.08535 0.90191 1.03923 1.22270 0.97795 1.02318 0.95625 1.22664 0.93039 0.82470 1.03408 1.87934 1.78245 1.21980 1.41829 1.22677 0.92235 0.98143 0.88767 1.22107 0.97371 0.92712 1.04794 0.91905 0.92119 0.87812 0.92461 0.91139 0.76519 0.87052 0.86015 0.90942 0.85676 0.88928 0.90535 0.88169 0.91676 0.88178 0.92185 0.89727 0.89593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.56 101.05 1.07 1.48 16 2 O -0.35 -4.86 8.12 -39.26 -0.32 -5.17 16 3 C 0.48 6.75 6.55 36.00 0.24 6.99 16 4 O -0.51 -8.03 15.72 -18.75 -0.29 -8.32 16 5 C -0.06 -0.76 0.50 -155.48 -0.08 -0.83 16 6 C 0.14 2.05 3.25 -4.05 -0.01 2.04 16 7 N -0.75 -13.22 4.93 -58.58 -0.29 -13.50 16 8 C 0.18 3.93 6.67 -83.70 -0.56 3.37 16 9 C -0.10 -2.29 10.49 -17.08 -0.18 -2.47 16 10 N -0.45 -11.10 10.33 -12.37 -0.13 -11.23 16 11 C -0.05 -1.31 10.97 -16.74 -0.18 -1.50 16 12 C 0.10 2.50 5.59 -106.70 -0.60 1.91 16 13 C -0.45 -11.54 9.08 -37.74 -0.34 -11.88 16 14 H 0.08 2.01 7.90 -52.48 -0.41 1.60 16 15 C 0.08 1.85 5.18 -17.34 -0.09 1.76 16 16 N -0.79 -19.31 10.92 55.55 0.61 -18.71 16 17 Si 0.91 17.88 29.59 -169.99 -5.03 12.85 16 18 H -0.26 -5.08 7.11 56.52 0.40 -4.67 16 19 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 20 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 21 C -0.21 -5.15 8.67 -38.39 -0.33 -5.49 16 22 C -0.14 -1.63 4.74 -26.49 -0.13 -1.76 16 23 C 0.06 0.68 6.57 37.30 0.25 0.93 16 24 O -0.38 -4.48 10.77 -35.23 -0.38 -4.86 16 25 C 0.06 0.58 6.57 37.21 0.24 0.83 16 26 C -0.13 -1.42 4.23 -26.59 -0.11 -1.53 16 27 H 0.06 0.72 8.13 -51.93 -0.42 0.29 16 28 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 29 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.06 0.86 7.96 -51.92 -0.41 0.44 16 31 H 0.07 0.98 4.82 -51.93 -0.25 0.73 16 32 H 0.40 6.85 5.37 -40.82 -0.22 6.63 16 33 H 0.11 2.28 6.73 -52.49 -0.35 1.92 16 34 H 0.12 2.90 8.06 -52.49 -0.42 2.47 16 35 H 0.28 6.22 8.30 -40.82 -0.34 5.88 16 36 H 0.13 3.19 6.19 -52.49 -0.33 2.87 16 37 H 0.09 1.13 6.81 -51.93 -0.35 0.77 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.07 0.80 6.60 -51.93 -0.34 0.46 16 41 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.59 6.60 -51.93 -0.34 0.24 16 43 H 0.08 0.94 8.03 -51.93 -0.42 0.52 16 44 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 351.64 15.07 5.30 5.30 Total: -1.00 -29.59 351.64 -7.30 -36.89 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -5.95 Total: 12.93 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -0.82 Total: -6.16 kcal Atomic # 7 Polarization: -43.63 SS G_CDS: 0.19 Total: -43.44 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.99 Total: -18.36 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.85 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.59 -7.30 -36.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161999212.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.596 kcal (2) G-P(sol) polarization free energy of solvation -29.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds