Wall clock time and date at job start Tue Mar 31 2020 12:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34231 * 117.00073 * 2 1 4 4 O 1.20829 * 119.99938 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00082 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.54677 * 300.00243 * 5 3 2 7 7 N 1.46492 * 109.47174 * 59.99364 * 6 5 3 8 8 C 1.39726 * 119.99860 * 180.02562 * 7 6 5 9 9 C 1.39331 * 120.36299 * 0.02562 * 8 7 6 10 10 N 1.31987 * 121.20403 * 180.02562 * 9 8 7 11 11 C 1.31490 * 122.06258 * 359.97438 * 10 9 8 12 12 C 1.40766 * 120.56355 * 0.02589 * 11 10 9 13 13 C 1.41420 * 120.62172 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99729 * 23.37477 * 13 12 11 15 15 C 1.39933 * 120.00239 * 203.36499 * 13 12 11 16 16 N 1.30828 * 119.99745 * 17.35253 * 15 13 12 17 17 Si 1.86796 * 120.00081 * 197.35440 * 15 13 12 18 18 H 1.48503 * 109.47317 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47305 * 120.00115 * 17 15 13 20 20 H 1.48499 * 109.47012 * 240.00040 * 17 15 13 21 21 C 1.38664 * 120.36017 * 179.72751 * 8 7 6 22 22 C 1.53179 * 109.54395 * 60.17649 * 5 3 2 23 23 C 1.53279 * 109.06843 * 176.85345 * 22 5 3 24 24 O 1.42906 * 109.45603 * 302.44515 * 23 22 5 25 25 C 1.42907 * 114.09915 * 61.15902 * 24 23 22 26 26 C 1.53094 * 109.41296 * 298.83823 * 25 24 23 27 27 H 1.09004 * 109.47224 * 300.00292 * 1 2 3 28 28 H 1.08997 * 109.46711 * 60.00097 * 1 2 3 29 29 H 1.08999 * 109.47091 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46605 * 299.99821 * 6 5 3 31 31 H 1.08995 * 109.47104 * 180.02562 * 6 5 3 32 32 H 0.97000 * 120.00468 * 0.02562 * 7 6 5 33 33 H 1.07996 * 119.39771 * 0.02562 * 9 8 7 34 34 H 1.07995 * 119.71943 * 180.02562 * 11 10 9 35 35 H 0.97003 * 119.99816 * 180.02562 * 16 15 13 36 36 H 1.07996 * 120.92865 * 359.97438 * 21 8 7 37 37 H 1.09007 * 109.52355 * 296.84392 * 22 5 3 38 38 H 1.09000 * 109.52458 * 57.02922 * 22 5 3 39 39 H 1.08996 * 109.45925 * 182.44834 * 23 22 5 40 40 H 1.08999 * 109.46582 * 62.44401 * 23 22 5 41 41 H 1.08997 * 109.47847 * 178.85820 * 25 24 23 42 42 H 1.09000 * 109.49042 * 58.82672 * 25 24 23 43 43 H 1.09003 * 109.52339 * 297.70407 * 26 25 24 44 44 H 1.08992 * 109.57084 * 177.54264 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.1148 0.5819 1.2496 7 7 3.7002 -0.8231 1.2503 8 6 4.0832 -1.6640 2.2984 9 6 4.8589 -1.1739 3.3470 10 7 5.2304 -1.9535 4.3451 11 6 4.8912 -3.2225 4.4032 12 6 4.1086 -3.8015 3.3865 13 6 3.7435 -5.1664 3.4474 14 1 3.7194 -5.6770 4.3989 15 6 3.4133 -5.8554 2.2751 16 7 3.7577 -5.3681 1.1109 17 14 2.4806 -7.4710 2.3725 18 1 2.2119 -7.8025 3.7948 19 1 1.1942 -7.3447 1.6415 20 1 3.2949 -8.5504 1.7584 21 6 3.6903 -2.9937 2.3095 22 6 4.1161 0.5845 -1.2514 23 6 5.6408 0.7395 -1.2800 24 8 5.9788 2.1277 -1.2514 25 6 5.5299 2.8135 -0.0808 26 6 4.0025 2.7432 -0.0041 27 1 -0.3634 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.7253 1.0761 2.1397 31 1 5.2031 0.6401 1.2490 32 1 3.1598 -1.1698 0.5232 33 1 5.1616 -0.1372 3.3430 34 1 5.2159 -3.8258 5.2380 35 1 3.5285 -5.8455 0.2982 36 1 3.0846 -3.4002 1.5131 37 1 3.8558 -0.4738 -1.2279 38 1 3.6867 1.0464 -2.1404 39 1 6.0346 0.2881 -2.1906 40 1 6.0728 0.2422 -0.4115 41 1 5.8439 3.8562 -0.1276 42 1 5.9603 2.3436 0.8036 43 1 3.5707 3.2488 -0.8679 44 1 3.6602 3.2278 0.9103 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161999212.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:37 Heat of formation + Delta-G solvation = -123.360080 kcal Electronic energy + Delta-G solvation = -28036.772774 eV Core-core repulsion = 24145.933275 eV Total energy + Delta-G solvation = -3890.839499 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.32849 -40.43018 -40.02690 -37.69680 -37.21199 -35.84108 -34.70565 -32.22444 -32.16941 -30.34026 -29.09662 -27.58684 -27.20410 -25.83875 -24.66831 -23.65469 -22.79090 -22.38594 -20.23831 -19.16879 -18.77538 -18.22711 -17.80691 -17.40764 -17.18427 -16.96374 -16.62179 -16.55019 -16.12719 -15.91912 -15.48538 -15.29118 -14.84300 -14.51791 -14.45765 -14.22448 -13.95462 -13.77455 -13.47906 -13.40374 -13.21756 -13.08631 -13.03817 -12.65518 -12.52663 -12.40528 -12.18162 -11.91586 -11.86493 -11.78859 -11.66410 -11.32895 -11.16905 -11.10318 -10.51211 -9.96831 -9.67350 -8.66633 -8.08836 -6.40582 0.95935 0.96920 1.24579 1.42026 1.54404 1.56854 1.57374 2.22271 2.58204 2.79863 2.91152 3.34377 3.41619 3.48608 3.73795 3.84139 3.89898 4.18267 4.18966 4.22430 4.24624 4.29476 4.41856 4.46808 4.59377 4.60866 4.63833 4.69159 4.70715 4.77538 4.87145 4.95998 5.00010 5.01033 5.10222 5.20966 5.25782 5.34107 5.73468 5.88805 6.05111 6.18563 6.35646 6.54157 6.76538 6.83176 6.86582 7.10325 7.84799 8.30573 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014017 B = 0.004014 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.166046 B = 6973.701418 C = 7675.081779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.360 6.360 3 C 0.474 3.526 4 O -0.527 6.527 5 C -0.054 4.054 6 C 0.141 3.859 7 N -0.738 5.738 8 C 0.190 3.810 9 C -0.107 4.107 10 N -0.455 5.455 11 C -0.080 4.080 12 C 0.073 3.927 13 C -0.483 4.483 14 H 0.081 0.919 15 C 0.041 3.959 16 N -0.811 5.811 17 Si 0.982 3.018 18 H -0.259 1.259 19 H -0.263 1.263 20 H -0.266 1.266 21 C -0.230 4.230 22 C -0.138 4.138 23 C 0.063 3.937 24 O -0.391 6.391 25 C 0.057 3.943 26 C -0.126 4.126 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.120 0.880 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.400 0.600 33 H 0.139 0.861 34 H 0.126 0.874 35 H 0.290 0.710 36 H 0.115 0.885 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.114 0.886 40 H 0.054 0.946 41 H 0.123 0.877 42 H 0.062 0.938 43 H 0.084 0.916 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.945 10.888 -8.761 14.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.275 6.275 3 C 0.318 3.682 4 O -0.416 6.416 5 C -0.056 4.056 6 C 0.017 3.983 7 N -0.373 5.373 8 C 0.086 3.914 9 C -0.267 4.267 10 N -0.162 5.162 11 C -0.244 4.244 12 C 0.068 3.932 13 C -0.513 4.513 14 H 0.099 0.901 15 C -0.176 4.176 16 N -0.436 5.436 17 Si 0.802 3.198 18 H -0.182 1.182 19 H -0.188 1.188 20 H -0.191 1.191 21 C -0.261 4.261 22 C -0.176 4.176 23 C -0.014 4.014 24 O -0.309 6.309 25 C -0.020 4.020 26 C -0.164 4.164 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.138 0.862 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.238 0.762 33 H 0.156 0.844 34 H 0.144 0.856 35 H 0.100 0.900 36 H 0.133 0.867 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.132 0.868 40 H 0.072 0.928 41 H 0.141 0.859 42 H 0.081 0.919 43 H 0.103 0.897 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.492 11.790 -8.471 14.730 hybrid contribution -1.606 -1.384 -0.566 2.194 sum -4.098 10.406 -9.037 14.378 Atomic orbital electron populations 1.23506 0.74873 1.05310 1.02600 1.86483 1.24955 1.32901 1.83179 1.23828 0.91984 0.81274 0.71114 1.90627 1.67548 1.36929 1.46524 1.20927 0.86546 0.99833 0.98284 1.21329 1.00059 0.81822 0.95122 1.44468 1.60165 1.07977 1.24703 1.18615 0.93656 0.90303 0.88813 1.21644 1.10767 0.99570 0.94712 1.66802 1.19047 1.06113 1.24223 1.22412 1.07091 0.91952 1.02947 1.18573 0.88657 0.94368 0.91597 1.19836 1.41212 0.95138 0.95091 0.90113 1.26734 0.93762 1.03136 0.93973 1.69872 1.34209 1.39837 0.99668 0.85161 0.78361 0.76447 0.79793 1.18237 1.18803 1.19082 1.21030 1.09769 0.91411 1.03876 1.22247 0.98116 1.01724 0.95491 1.22669 0.92581 0.82505 1.03639 1.87933 1.78363 1.22006 1.42626 1.22837 0.91420 0.99364 0.88342 1.22108 0.98049 0.91226 1.05063 0.92269 0.90934 0.86189 0.92453 0.90053 0.76160 0.84383 0.85645 0.89956 0.86716 0.89774 0.89588 0.86818 0.92810 0.85873 0.91938 0.89736 0.89108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 10.56 113.37 1.20 1.85 16 2 O -0.36 -9.74 8.12 -51.43 -0.42 -10.16 16 3 C 0.47 12.85 6.55 71.23 0.47 13.32 16 4 O -0.53 -15.96 15.72 21.95 0.35 -15.62 16 5 C -0.05 -1.26 0.50 -52.81 -0.03 -1.29 16 6 C 0.14 3.83 3.25 86.38 0.28 4.11 16 7 N -0.74 -25.38 4.93 -339.23 -1.67 -27.05 16 8 C 0.19 8.42 6.67 38.25 0.25 8.67 16 9 C -0.11 -4.83 10.49 84.93 0.89 -3.94 16 10 N -0.45 -22.78 10.33 -193.06 -1.99 -24.77 16 11 C -0.08 -4.20 10.97 85.36 0.94 -3.26 16 12 C 0.07 3.93 5.59 -21.21 -0.12 3.81 16 13 C -0.48 -25.31 9.08 23.46 0.21 -25.09 16 14 H 0.08 4.08 7.90 -2.91 -0.02 4.06 16 15 C 0.04 1.95 5.18 85.25 0.44 2.39 16 16 N -0.81 -39.96 10.92 21.82 0.24 -39.72 16 17 Si 0.98 36.30 29.59 68.60 2.03 38.33 16 18 H -0.26 -9.47 7.11 99.48 0.71 -8.77 16 19 H -0.26 -9.30 7.11 99.48 0.71 -8.60 16 20 H -0.27 -9.45 7.11 99.48 0.71 -8.74 16 21 C -0.23 -11.66 8.67 23.04 0.20 -11.46 16 22 C -0.14 -2.94 4.74 30.75 0.15 -2.80 16 23 C 0.06 1.29 6.57 72.08 0.47 1.77 16 24 O -0.39 -8.27 10.77 -148.98 -1.60 -9.88 16 25 C 0.06 0.98 6.57 72.01 0.47 1.45 16 26 C -0.13 -2.45 4.23 30.69 0.13 -2.32 16 27 H 0.06 1.31 8.13 -2.38 -0.02 1.29 16 28 H 0.07 1.38 8.13 -2.39 -0.02 1.36 16 29 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.06 1.60 7.96 -2.38 -0.02 1.58 16 31 H 0.08 2.10 4.82 -2.39 -0.01 2.09 16 32 H 0.40 13.56 5.37 -92.71 -0.50 13.06 16 33 H 0.14 5.39 6.73 -2.91 -0.02 5.37 16 34 H 0.13 6.20 8.06 -2.91 -0.02 6.18 16 35 H 0.29 12.76 8.30 -92.71 -0.77 11.99 16 36 H 0.12 5.98 6.19 -2.91 -0.02 5.96 16 37 H 0.08 1.95 6.81 -2.38 -0.02 1.93 16 38 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.05 1.23 6.60 -2.39 -0.02 1.22 16 41 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.06 1.06 6.60 -2.39 -0.02 1.05 16 43 H 0.08 1.69 8.03 -2.39 -0.02 1.67 16 44 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -63.36 351.64 3.42 -59.94 By element: Atomic # 1 Polarization: 41.18 SS G_CDS: 0.54 Total: 41.72 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: 5.96 Total: -12.79 kcal Atomic # 7 Polarization: -88.11 SS G_CDS: -3.43 Total: -91.54 kcal Atomic # 8 Polarization: -33.98 SS G_CDS: -1.68 Total: -35.66 kcal Atomic # 14 Polarization: 36.30 SS G_CDS: 2.03 Total: 38.33 kcal Total: -63.36 3.42 -59.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161999212.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.424 kcal (2) G-P(sol) polarization free energy of solvation -63.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds