Wall clock time and date at job start Tue Mar 31 2020 12:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34226 * 117.00299 * 2 1 4 4 O 1.20829 * 119.99861 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00094 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.54192 * 300.00541 * 5 3 2 7 7 N 1.46493 * 109.47196 * 60.00045 * 6 5 3 8 8 C 1.32212 * 120.00142 * 239.70589 * 7 6 5 9 9 C 1.46917 * 120.82977 * 354.10719 * 8 7 6 10 10 C 1.34374 * 119.36614 * 180.24961 * 9 8 7 11 11 N 1.36431 * 121.22374 * 359.44248 * 10 9 8 12 12 H 0.96988 * 119.09174 * 180.29230 * 11 10 9 13 13 C 1.37769 * 121.81532 * 0.57160 * 11 10 9 14 14 C 1.40179 * 119.74277 * 179.70219 * 13 11 10 15 15 H 1.08010 * 119.99786 * 206.93265 * 14 13 11 16 16 C 1.40346 * 120.00097 * 26.92842 * 14 13 11 17 17 N 1.30586 * 120.00286 * 11.86908 * 16 14 13 18 18 Si 1.86802 * 119.99903 * 191.87425 * 16 14 13 19 19 H 1.48504 * 109.47275 * 90.00089 * 18 16 14 20 20 H 1.48500 * 109.47016 * 210.00004 * 18 16 14 21 21 H 1.48496 * 109.47087 * 329.99776 * 18 16 14 22 22 C 1.39066 * 120.51542 * 359.71911 * 13 11 10 23 23 C 1.53177 * 109.54189 * 60.18340 * 5 3 2 24 24 C 1.53283 * 109.06422 * 176.85084 * 23 5 3 25 25 O 1.42897 * 109.45942 * 302.44840 * 24 23 5 26 26 C 1.42900 * 114.10460 * 61.15468 * 25 24 23 27 27 C 1.53098 * 109.41419 * 298.84677 * 26 25 24 28 28 H 1.09000 * 109.46488 * 299.99597 * 1 2 3 29 29 H 1.09002 * 109.46775 * 59.99375 * 1 2 3 30 30 H 1.08996 * 109.47155 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47177 * 299.99812 * 6 5 3 32 32 H 1.09000 * 109.46490 * 180.02562 * 6 5 3 33 33 H 1.07999 * 120.31861 * 359.97438 * 9 8 7 34 34 H 1.08006 * 119.38987 * 179.72359 * 10 9 8 35 35 H 0.96993 * 120.00314 * 179.97438 * 17 16 14 36 36 H 1.07999 * 120.63326 * 180.02562 * 22 13 11 37 37 H 1.08997 * 109.51992 * 296.84189 * 23 5 3 38 38 H 1.08997 * 109.52197 * 57.02871 * 23 5 3 39 39 H 1.08993 * 109.45845 * 182.44655 * 24 23 5 40 40 H 1.08998 * 109.46293 * 62.44401 * 24 23 5 41 41 H 1.08995 * 109.48369 * 178.85677 * 26 25 24 42 42 H 1.09001 * 109.48626 * 58.82618 * 26 25 24 43 43 H 1.09002 * 109.51892 * 297.69567 * 27 26 25 44 44 H 1.08998 * 109.57016 * 177.54201 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 6 4.1147 0.5817 1.2496 7 7 3.7002 -0.8234 1.2501 8 6 2.9696 -1.2967 2.2452 9 6 2.6711 -0.4677 3.4208 10 6 1.9299 -0.9802 4.4175 11 7 1.4401 -2.2519 4.3528 12 1 0.9050 -2.5891 5.0880 13 6 1.6895 -3.0723 3.2745 14 6 1.1698 -4.3740 3.2561 15 1 1.6710 -5.1477 2.6932 16 6 -0.0017 -4.6720 3.9691 17 7 -0.7338 -3.7061 4.4552 18 14 -0.5137 -6.4505 4.2229 19 1 0.0859 -6.9636 5.4809 20 1 -1.9939 -6.5317 4.3110 21 1 -0.0403 -7.2700 3.0786 22 6 2.4532 -2.6191 2.2042 23 6 4.1161 0.5845 -1.2515 24 6 5.6408 0.7395 -1.2800 25 8 5.9789 2.1276 -1.2512 26 6 5.5300 2.8134 -0.0806 27 6 4.0026 2.7431 -0.0039 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.7253 1.0757 2.1397 32 1 5.2032 0.6398 1.2490 33 1 3.0476 0.5425 3.4853 34 1 1.7140 -0.3726 5.2840 35 1 -1.5437 -3.9121 4.9476 36 1 2.6495 -3.2604 1.3577 37 1 3.8558 -0.4736 -1.2280 38 1 3.6867 1.0466 -2.1404 39 1 6.0347 0.2883 -2.1907 40 1 6.0728 0.2422 -0.4116 41 1 5.8441 3.8561 -0.1272 42 1 5.9603 2.3433 0.8037 43 1 3.5709 3.2487 -0.8676 44 1 3.6603 3.2276 0.9105 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161999979.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:41 Heat of formation + Delta-G solvation = -92.772828 kcal Electronic energy + Delta-G solvation = -28208.702132 eV Core-core repulsion = 24319.188996 eV Total energy + Delta-G solvation = -3889.513136 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.54713 -38.80888 -38.55671 -35.93225 -35.34149 -34.04644 -32.87289 -30.93926 -30.64618 -28.88845 -27.56770 -26.62615 -25.47847 -24.08992 -23.39599 -21.58136 -21.23386 -20.41664 -18.52734 -18.01334 -17.06690 -16.65060 -16.59410 -15.91310 -15.73916 -15.44372 -15.08307 -14.80948 -14.63144 -14.44246 -13.82073 -13.66758 -13.21064 -13.09839 -12.93208 -12.76025 -12.48520 -12.22743 -12.00664 -11.88875 -11.57698 -11.43685 -11.20066 -11.15513 -10.97847 -10.81170 -10.72234 -10.39986 -10.35188 -10.17847 -10.14165 -9.91673 -9.75137 -9.48949 -9.09348 -8.24724 -7.56901 -7.28915 -5.98796 -4.82013 2.57212 2.65791 2.75999 2.86819 2.91180 3.12955 3.29514 3.63170 4.04766 4.23914 4.59469 4.80606 5.00300 5.07344 5.18937 5.27532 5.40447 5.51780 5.55272 5.57604 5.59276 5.66602 5.78917 5.80325 5.87841 5.95018 6.04439 6.05881 6.19818 6.23937 6.39514 6.49310 6.54271 6.58845 6.68499 6.75248 6.83845 6.98229 7.35644 7.36304 7.63324 7.72708 7.94828 8.21907 8.28397 8.32467 8.76627 8.88372 9.67563 9.71962 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021139 B = 0.003568 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.218919 B = 7846.380525 C = 8064.894764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.313 6.313 3 C 0.478 3.522 4 O -0.534 6.534 5 C -0.044 4.044 6 C 0.069 3.931 7 N -0.656 5.656 8 C 0.296 3.704 9 C -0.308 4.308 10 C 0.127 3.873 11 N -0.599 5.599 12 H 0.414 0.586 13 C 0.330 3.670 14 C -0.468 4.468 15 H 0.102 0.898 16 C 0.077 3.923 17 N -0.821 5.821 18 Si 0.924 3.076 19 H -0.265 1.265 20 H -0.276 1.276 21 H -0.257 1.257 22 C -0.343 4.343 23 C -0.129 4.129 24 C 0.065 3.935 25 O -0.389 6.389 26 C 0.064 3.936 27 C -0.135 4.135 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.100 0.900 31 H 0.029 0.971 32 H 0.059 0.941 33 H 0.113 0.887 34 H 0.128 0.872 35 H 0.291 0.709 36 H 0.114 0.886 37 H 0.104 0.896 38 H 0.058 0.942 39 H 0.092 0.908 40 H 0.062 0.938 41 H 0.092 0.908 42 H 0.054 0.946 43 H 0.075 0.925 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.188 4.766 -1.423 5.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.227 6.227 3 C 0.323 3.677 4 O -0.425 6.425 5 C -0.046 4.046 6 C -0.063 4.063 7 N -0.382 5.382 8 C 0.134 3.866 9 C -0.338 4.338 10 C -0.003 4.003 11 N -0.209 5.209 12 H 0.253 0.747 13 C 0.221 3.779 14 C -0.502 4.502 15 H 0.120 0.880 16 C -0.141 4.141 17 N -0.449 5.449 18 Si 0.748 3.252 19 H -0.190 1.190 20 H -0.201 1.201 21 H -0.180 1.180 22 C -0.372 4.372 23 C -0.166 4.166 24 C -0.012 4.012 25 O -0.308 6.308 26 C -0.012 4.012 27 C -0.173 4.173 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.119 0.881 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.131 0.869 34 H 0.146 0.854 35 H 0.102 0.898 36 H 0.132 0.868 37 H 0.123 0.877 38 H 0.076 0.924 39 H 0.110 0.890 40 H 0.081 0.919 41 H 0.110 0.890 42 H 0.073 0.927 43 H 0.094 0.906 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.320 5.009 -2.307 6.437 hybrid contribution -1.441 -0.080 1.514 2.092 sum 1.879 4.929 -0.793 5.334 Atomic orbital electron populations 1.23169 0.77848 1.03572 1.01058 1.86793 1.21699 1.31782 1.82399 1.23633 0.91748 0.81365 0.70989 1.90573 1.67512 1.36970 1.47405 1.20723 0.87400 0.96249 1.00184 1.21803 0.98328 0.93978 0.92202 1.73386 1.28109 1.08171 1.28565 1.20130 0.86634 0.92564 0.87315 1.22290 1.11206 1.01408 0.98887 1.21233 0.94431 0.86413 0.98214 1.42104 1.47625 1.10766 1.20396 0.74664 1.17669 0.88394 0.88167 0.83683 1.19506 1.07785 0.95029 1.27858 0.88020 1.26148 0.95035 1.00666 0.92238 1.69294 1.13079 1.34357 1.28170 0.86009 0.78149 0.80866 0.80162 1.19039 1.20059 1.18047 1.20235 1.19287 0.96618 1.01057 1.22064 0.96289 1.03531 0.94757 1.22627 0.94266 0.81776 1.02498 1.87866 1.78386 1.22563 1.41941 1.22568 0.92823 0.97334 0.88508 1.22118 0.96799 0.94735 1.03698 0.92680 0.93074 0.88123 0.95253 0.92347 0.86948 0.85405 0.89762 0.86830 0.87727 0.92370 0.88970 0.91946 0.88958 0.92737 0.90628 0.90581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.67 10.56 101.05 1.07 1.73 16 2 O -0.31 -6.43 8.62 -39.25 -0.34 -6.77 16 3 C 0.48 9.54 6.55 36.01 0.24 9.77 16 4 O -0.53 -11.27 15.72 -18.75 -0.29 -11.57 16 5 C -0.04 -0.76 0.55 -155.48 -0.09 -0.85 16 6 C 0.07 1.29 4.59 -4.04 -0.02 1.27 16 7 N -0.66 -14.27 8.60 -57.24 -0.49 -14.76 16 8 C 0.30 6.75 6.10 -82.74 -0.51 6.24 16 9 C -0.31 -6.37 9.38 -37.43 -0.35 -6.72 16 10 C 0.13 2.43 11.15 -16.87 -0.19 2.25 16 11 N -0.60 -12.56 4.85 -10.83 -0.05 -12.62 16 12 H 0.41 8.36 6.47 -40.82 -0.26 8.10 16 13 C 0.33 7.66 6.33 -84.16 -0.53 7.13 16 14 C -0.47 -10.65 9.04 -38.06 -0.34 -11.00 16 15 H 0.10 2.26 7.88 -52.48 -0.41 1.85 16 16 C 0.08 1.61 5.24 -17.29 -0.09 1.52 16 17 N -0.82 -17.44 11.10 55.57 0.62 -16.82 16 18 Si 0.92 16.05 29.58 -169.99 -5.03 11.02 16 19 H -0.27 -4.55 7.11 56.52 0.40 -4.15 16 20 H -0.28 -4.77 7.11 56.52 0.40 -4.36 16 21 H -0.26 -4.52 7.11 56.52 0.40 -4.11 16 22 C -0.34 -8.22 9.83 -37.82 -0.37 -8.59 16 23 C -0.13 -2.08 4.76 -26.49 -0.13 -2.21 16 24 C 0.06 0.93 6.57 37.30 0.25 1.17 16 25 O -0.39 -5.71 10.77 -35.23 -0.38 -6.09 16 26 C 0.06 0.85 6.57 37.21 0.24 1.09 16 27 C -0.14 -2.05 4.23 -26.59 -0.11 -2.16 16 28 H 0.05 0.99 8.13 -51.93 -0.42 0.57 16 29 H 0.05 0.80 8.13 -51.93 -0.42 0.38 16 30 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 31 H 0.03 0.57 5.23 -51.93 -0.27 0.30 16 32 H 0.06 1.03 5.01 -51.93 -0.26 0.77 16 33 H 0.11 2.17 5.91 -52.49 -0.31 1.86 16 34 H 0.13 1.94 8.06 -52.48 -0.42 1.51 16 35 H 0.29 5.64 8.29 -40.82 -0.34 5.30 16 36 H 0.11 2.80 8.06 -52.49 -0.42 2.38 16 37 H 0.10 1.87 7.53 -51.93 -0.39 1.48 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.06 0.93 6.60 -51.93 -0.34 0.59 16 41 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.05 0.70 6.60 -51.93 -0.34 0.35 16 43 H 0.08 1.18 8.03 -51.93 -0.42 0.76 16 44 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 352.63 15.07 5.31 5.31 Total: -1.00 -26.80 352.63 -7.54 -34.34 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: -5.95 Total: 17.30 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -0.93 Total: 0.65 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: 0.07 Total: -44.20 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -1.01 Total: -24.43 kcal Atomic # 14 Polarization: 16.05 SS G_CDS: -5.03 Total: 11.02 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -26.80 -7.54 -34.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161999979.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.429 kcal (2) G-P(sol) polarization free energy of solvation -26.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds