Wall clock time and date at job start Tue Mar 31 2020 12:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34226 * 117.00299 * 2 1 4 4 O 1.20829 * 119.99861 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00094 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.54192 * 300.00541 * 5 3 2 7 7 N 1.46493 * 109.47196 * 60.00045 * 6 5 3 8 8 C 1.32212 * 120.00142 * 239.70589 * 7 6 5 9 9 C 1.46917 * 120.82977 * 354.10719 * 8 7 6 10 10 C 1.34374 * 119.36614 * 180.24961 * 9 8 7 11 11 N 1.36431 * 121.22374 * 359.44248 * 10 9 8 12 12 H 0.96988 * 119.09174 * 180.29230 * 11 10 9 13 13 C 1.37769 * 121.81532 * 0.57160 * 11 10 9 14 14 C 1.40179 * 119.74277 * 179.70219 * 13 11 10 15 15 H 1.08010 * 119.99786 * 206.93265 * 14 13 11 16 16 C 1.40346 * 120.00097 * 26.92842 * 14 13 11 17 17 N 1.30586 * 120.00286 * 11.86908 * 16 14 13 18 18 Si 1.86802 * 119.99903 * 191.87425 * 16 14 13 19 19 H 1.48504 * 109.47275 * 90.00089 * 18 16 14 20 20 H 1.48500 * 109.47016 * 210.00004 * 18 16 14 21 21 H 1.48496 * 109.47087 * 329.99776 * 18 16 14 22 22 C 1.39066 * 120.51542 * 359.71911 * 13 11 10 23 23 C 1.53177 * 109.54189 * 60.18340 * 5 3 2 24 24 C 1.53283 * 109.06422 * 176.85084 * 23 5 3 25 25 O 1.42897 * 109.45942 * 302.44840 * 24 23 5 26 26 C 1.42900 * 114.10460 * 61.15468 * 25 24 23 27 27 C 1.53098 * 109.41419 * 298.84677 * 26 25 24 28 28 H 1.09000 * 109.46488 * 299.99597 * 1 2 3 29 29 H 1.09002 * 109.46775 * 59.99375 * 1 2 3 30 30 H 1.08996 * 109.47155 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47177 * 299.99812 * 6 5 3 32 32 H 1.09000 * 109.46490 * 180.02562 * 6 5 3 33 33 H 1.07999 * 120.31861 * 359.97438 * 9 8 7 34 34 H 1.08006 * 119.38987 * 179.72359 * 10 9 8 35 35 H 0.96993 * 120.00314 * 179.97438 * 17 16 14 36 36 H 1.07999 * 120.63326 * 180.02562 * 22 13 11 37 37 H 1.08997 * 109.51992 * 296.84189 * 23 5 3 38 38 H 1.08997 * 109.52197 * 57.02871 * 23 5 3 39 39 H 1.08993 * 109.45845 * 182.44655 * 24 23 5 40 40 H 1.08998 * 109.46293 * 62.44401 * 24 23 5 41 41 H 1.08995 * 109.48369 * 178.85677 * 26 25 24 42 42 H 1.09001 * 109.48626 * 58.82618 * 26 25 24 43 43 H 1.09002 * 109.51892 * 297.69567 * 27 26 25 44 44 H 1.08998 * 109.57016 * 177.54201 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 6 4.1147 0.5817 1.2496 7 7 3.7002 -0.8234 1.2501 8 6 2.9696 -1.2967 2.2452 9 6 2.6711 -0.4677 3.4208 10 6 1.9299 -0.9802 4.4175 11 7 1.4401 -2.2519 4.3528 12 1 0.9050 -2.5891 5.0880 13 6 1.6895 -3.0723 3.2745 14 6 1.1698 -4.3740 3.2561 15 1 1.6710 -5.1477 2.6932 16 6 -0.0017 -4.6720 3.9691 17 7 -0.7338 -3.7061 4.4552 18 14 -0.5137 -6.4505 4.2229 19 1 0.0859 -6.9636 5.4809 20 1 -1.9939 -6.5317 4.3110 21 1 -0.0403 -7.2700 3.0786 22 6 2.4532 -2.6191 2.2042 23 6 4.1161 0.5845 -1.2515 24 6 5.6408 0.7395 -1.2800 25 8 5.9789 2.1276 -1.2512 26 6 5.5300 2.8134 -0.0806 27 6 4.0026 2.7431 -0.0039 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.7253 1.0757 2.1397 32 1 5.2032 0.6398 1.2490 33 1 3.0476 0.5425 3.4853 34 1 1.7140 -0.3726 5.2840 35 1 -1.5437 -3.9121 4.9476 36 1 2.6495 -3.2604 1.3577 37 1 3.8558 -0.4736 -1.2280 38 1 3.6867 1.0466 -2.1404 39 1 6.0347 0.2883 -2.1907 40 1 6.0728 0.2422 -0.4116 41 1 5.8441 3.8561 -0.1272 42 1 5.9603 2.3433 0.8037 43 1 3.5709 3.2487 -0.8676 44 1 3.6603 3.2276 0.9105 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161999979.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:40 Heat of formation + Delta-G solvation = -108.284496 kcal Electronic energy + Delta-G solvation = -28209.374769 eV Core-core repulsion = 24319.188996 eV Total energy + Delta-G solvation = -3890.185772 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.00330 -40.26559 -40.07520 -37.48700 -36.86039 -35.61277 -34.41470 -32.32268 -32.11397 -30.46082 -29.01486 -28.24922 -26.91408 -25.58796 -24.59314 -23.21646 -22.63334 -22.03548 -19.97223 -19.64946 -18.52328 -18.31134 -18.06195 -17.42479 -17.00431 -16.87733 -16.56031 -16.31261 -15.96031 -15.81439 -15.37225 -15.03252 -14.67982 -14.52154 -14.49710 -14.25080 -13.94076 -13.61356 -13.44207 -13.25795 -13.06563 -12.91040 -12.80338 -12.57909 -12.40556 -12.31982 -12.14679 -11.83441 -11.75775 -11.67170 -11.65643 -11.31607 -11.27612 -10.98161 -10.41031 -9.92147 -9.21054 -8.91155 -7.65931 -6.57703 0.99999 1.07621 1.19680 1.43947 1.55870 1.63033 1.85509 2.17783 2.60115 2.95313 2.97914 3.42302 3.59588 3.66335 3.81762 4.01148 4.10118 4.13862 4.18118 4.22287 4.25208 4.33028 4.46767 4.50810 4.59465 4.65365 4.70399 4.80771 4.84957 4.88904 4.98271 5.01668 5.06689 5.11133 5.18911 5.21773 5.24113 5.46307 5.69314 5.89231 6.03592 6.17121 6.23496 6.52539 6.58741 6.77143 7.06341 7.22473 8.01134 8.10973 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021139 B = 0.003568 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.218919 B = 7846.380525 C = 8064.894764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.333 6.333 3 C 0.473 3.527 4 O -0.550 6.550 5 C -0.044 4.044 6 C 0.073 3.927 7 N -0.669 5.669 8 C 0.281 3.719 9 C -0.326 4.326 10 C 0.135 3.865 11 N -0.600 5.600 12 H 0.417 0.583 13 C 0.319 3.681 14 C -0.496 4.496 15 H 0.094 0.906 16 C 0.051 3.949 17 N -0.832 5.832 18 Si 0.991 3.009 19 H -0.257 1.257 20 H -0.268 1.268 21 H -0.263 1.263 22 C -0.376 4.376 23 C -0.124 4.124 24 C 0.071 3.929 25 O -0.393 6.393 26 C 0.065 3.935 27 C -0.130 4.130 28 H 0.048 0.952 29 H 0.069 0.931 30 H 0.106 0.894 31 H 0.025 0.975 32 H 0.072 0.928 33 H 0.126 0.874 34 H 0.175 0.825 35 H 0.302 0.698 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.062 0.938 39 H 0.113 0.887 40 H 0.056 0.944 41 H 0.122 0.878 42 H 0.060 0.940 43 H 0.071 0.929 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.193 5.336 -0.541 6.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.247 6.247 3 C 0.318 3.682 4 O -0.442 6.442 5 C -0.046 4.046 6 C -0.058 4.058 7 N -0.395 5.395 8 C 0.118 3.882 9 C -0.356 4.356 10 C 0.006 3.994 11 N -0.210 5.210 12 H 0.257 0.743 13 C 0.210 3.790 14 C -0.529 4.529 15 H 0.112 0.888 16 C -0.166 4.166 17 N -0.460 5.460 18 Si 0.812 3.188 19 H -0.181 1.181 20 H -0.193 1.193 21 H -0.187 1.187 22 C -0.405 4.405 23 C -0.162 4.162 24 C -0.005 4.005 25 O -0.312 6.312 26 C -0.011 4.011 27 C -0.168 4.168 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.124 0.876 31 H 0.043 0.957 32 H 0.090 0.910 33 H 0.143 0.857 34 H 0.192 0.808 35 H 0.114 0.886 36 H 0.107 0.893 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.131 0.869 40 H 0.074 0.926 41 H 0.140 0.860 42 H 0.078 0.922 43 H 0.090 0.910 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.334 5.603 -1.427 6.674 hybrid contribution -1.499 -0.239 1.227 1.952 sum 1.835 5.364 -0.199 5.673 Atomic orbital electron populations 1.23284 0.76758 1.04177 1.01594 1.86790 1.23096 1.32452 1.82346 1.24177 0.92759 0.80909 0.70367 1.90547 1.68097 1.37266 1.48280 1.20833 0.85775 0.97980 1.00003 1.21818 0.98969 0.92398 0.92641 1.73296 1.27514 1.10078 1.28574 1.20205 0.87053 0.92478 0.88471 1.22379 1.12478 1.01912 0.98794 1.21829 0.92678 0.85796 0.99112 1.42098 1.47815 1.11310 1.19790 0.74278 1.17776 0.88275 0.88829 0.84147 1.19679 1.09032 0.94994 1.29179 0.88763 1.26807 0.94225 1.04374 0.91200 1.69291 1.13310 1.35959 1.27430 0.85015 0.77918 0.75903 0.79942 1.18084 1.19296 1.18727 1.20138 1.21747 0.97452 1.01207 1.22010 0.97871 1.01971 0.94350 1.22603 0.92578 0.82021 1.03333 1.87873 1.78246 1.22430 1.42658 1.22724 0.91121 0.98984 0.88292 1.22118 0.98369 0.92671 1.03644 0.93351 0.91245 0.87558 0.95711 0.91041 0.85655 0.80818 0.88611 0.89289 0.89940 0.91928 0.86860 0.92622 0.85986 0.92191 0.91010 0.90360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.28 10.56 113.37 1.20 2.47 16 2 O -0.33 -13.99 8.62 -51.38 -0.44 -14.43 16 3 C 0.47 18.92 6.55 71.24 0.47 19.39 16 4 O -0.55 -23.14 15.72 21.95 0.35 -22.80 16 5 C -0.04 -1.52 0.55 -52.81 -0.03 -1.55 16 6 C 0.07 2.72 4.59 86.38 0.40 3.11 16 7 N -0.67 -29.74 8.60 -335.01 -2.88 -32.62 16 8 C 0.28 13.15 6.10 42.30 0.26 13.41 16 9 C -0.33 -13.38 9.38 23.66 0.22 -13.16 16 10 C 0.14 5.02 11.15 83.09 0.93 5.94 16 11 N -0.60 -25.00 4.85 -188.18 -0.91 -25.91 16 12 H 0.42 16.52 6.47 -92.72 -0.60 15.92 16 13 C 0.32 15.22 6.33 38.88 0.25 15.46 16 14 C -0.50 -23.07 9.04 23.25 0.21 -22.86 16 15 H 0.09 4.38 7.88 -2.91 -0.02 4.35 16 16 C 0.05 2.10 5.24 85.39 0.45 2.55 16 17 N -0.83 -34.51 11.10 21.89 0.24 -34.27 16 18 Si 0.99 32.00 29.58 68.60 2.03 34.03 16 19 H -0.26 -7.91 7.11 99.48 0.71 -7.20 16 20 H -0.27 -8.33 7.11 99.48 0.71 -7.62 16 21 H -0.26 -8.72 7.11 99.48 0.71 -8.01 16 22 C -0.38 -18.89 9.83 23.41 0.23 -18.66 16 23 C -0.12 -3.98 4.76 30.75 0.15 -3.84 16 24 C 0.07 1.94 6.57 72.08 0.47 2.41 16 25 O -0.39 -10.63 10.77 -148.98 -1.60 -12.24 16 26 C 0.07 1.55 6.57 72.01 0.47 2.02 16 27 C -0.13 -3.73 4.23 30.69 0.13 -3.60 16 28 H 0.05 1.76 8.13 -2.39 -0.02 1.74 16 29 H 0.07 2.18 8.13 -2.39 -0.02 2.16 16 30 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 31 H 0.02 0.94 5.23 -2.39 -0.01 0.93 16 32 H 0.07 2.46 5.01 -2.39 -0.01 2.45 16 33 H 0.13 4.73 5.91 -2.91 -0.02 4.72 16 34 H 0.17 4.73 8.06 -2.91 -0.02 4.70 16 35 H 0.30 11.19 8.29 -92.71 -0.77 10.42 16 36 H 0.09 4.73 8.06 -2.91 -0.02 4.71 16 37 H 0.08 3.02 7.53 -2.39 -0.02 3.01 16 38 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 40 H 0.06 1.60 6.60 -2.39 -0.02 1.58 16 41 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.06 1.38 6.60 -2.39 -0.02 1.36 16 43 H 0.07 2.13 8.03 -2.39 -0.02 2.11 16 44 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -58.37 352.63 3.01 -55.36 By element: Atomic # 1 Polarization: 49.33 SS G_CDS: 0.44 Total: 49.76 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: 5.79 Total: 3.11 kcal Atomic # 7 Polarization: -89.25 SS G_CDS: -3.55 Total: -92.79 kcal Atomic # 8 Polarization: -47.77 SS G_CDS: -1.70 Total: -49.47 kcal Atomic # 14 Polarization: 32.00 SS G_CDS: 2.03 Total: 34.03 kcal Total: -58.37 3.01 -55.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161999979.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.924 kcal (2) G-P(sol) polarization free energy of solvation -58.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds