Wall clock time and date at job start Tue Mar 31 2020 12:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 120.00117 * 2 1 4 4 H 1.48499 * 109.47134 * 270.00681 * 3 2 1 5 5 H 1.48510 * 109.47035 * 30.00390 * 3 2 1 6 6 H 1.48493 * 109.47176 * 150.00136 * 3 2 1 7 7 C 1.38816 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99575 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99888 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99677 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47030 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47043 * 180.02562 * 11 10 9 13 13 N 1.46507 * 109.47253 * 180.02562 * 12 11 10 14 14 C 1.34778 * 120.00312 * 180.02562 * 13 12 11 15 15 O 1.21276 * 119.99603 * 359.97438 * 14 13 12 16 16 C 1.50693 * 119.99968 * 179.97438 * 14 13 12 17 17 N 1.46502 * 109.47286 * 179.97438 * 16 14 13 18 18 C 1.34771 * 120.00527 * 179.97438 * 17 16 14 19 19 O 1.21596 * 119.99653 * 359.97438 * 18 17 16 20 20 N 1.34773 * 120.00351 * 179.97438 * 18 17 16 21 21 C 1.39952 * 120.00158 * 185.31915 * 20 18 17 22 22 C 1.38863 * 120.07100 * 33.31000 * 21 20 18 23 23 C 1.38107 * 119.93134 * 179.97438 * 22 21 20 24 24 C 1.38286 * 120.06964 * 359.97438 * 23 22 21 25 25 C 1.38276 * 120.13608 * 0.04779 * 24 23 22 26 26 C 1.38112 * 120.07571 * 359.95397 * 25 24 23 27 27 H 0.96996 * 120.00220 * 359.97438 * 1 2 3 28 28 H 0.97000 * 120.00001 * 359.97438 * 9 7 2 29 29 H 1.09000 * 109.47259 * 59.99686 * 10 9 7 30 30 H 1.09003 * 109.46948 * 300.00167 * 10 9 7 31 31 H 1.09000 * 109.47558 * 59.99622 * 11 10 9 32 32 H 1.09003 * 109.47189 * 299.99772 * 11 10 9 33 33 H 1.08995 * 109.47482 * 59.99820 * 12 11 10 34 34 H 1.09003 * 109.47356 * 299.99317 * 12 11 10 35 35 H 0.96999 * 119.99789 * 359.97438 * 13 12 11 36 36 H 1.09000 * 109.47456 * 59.99424 * 16 14 13 37 37 H 1.09003 * 109.47427 * 299.99491 * 16 14 13 38 38 H 0.97009 * 119.99642 * 0.02562 * 17 16 14 39 39 H 0.96998 * 120.00170 * 5.32036 * 20 18 17 40 40 H 1.08002 * 120.03070 * 359.70685 * 22 21 20 41 41 H 1.08003 * 119.96669 * 179.97438 * 23 22 21 42 42 H 1.08004 * 119.93091 * 180.02562 * 24 23 22 43 43 H 1.08004 * 119.95999 * 179.97438 * 25 24 23 44 44 H 1.08000 * 120.03932 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4477 2.6526 0.7002 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 6 1.0639 -4.8197 -0.0021 12 6 1.8288 -6.1447 -0.0026 13 7 0.8768 -7.2583 -0.0036 14 6 1.3261 -8.5290 -0.0037 15 8 2.5184 -8.7506 -0.0034 16 6 0.3468 -9.6744 -0.0041 17 7 1.0793 -10.9432 -0.0048 18 6 0.4055 -12.1103 -0.0047 19 8 -0.8105 -12.1103 -0.0037 20 7 1.0793 -13.2775 -0.0058 21 6 0.3840 -14.4869 -0.1181 22 6 -0.7772 -14.5540 -0.8767 23 6 -1.4608 -15.7491 -0.9860 24 6 -0.9897 -16.8782 -0.3414 25 6 0.1660 -16.8145 0.4150 26 6 0.8542 -15.6224 0.5283 27 1 -0.4850 0.8400 0.0004 28 1 0.3555 -2.3881 0.0002 29 1 2.6855 -3.7150 0.8878 30 1 2.6841 -3.7141 -0.8922 31 1 0.4368 -4.7614 -0.8917 32 1 0.4375 -4.7626 0.8882 33 1 2.4556 -6.2028 0.8872 34 1 2.4554 -6.2022 -0.8927 35 1 -0.0768 -7.0811 -0.0034 36 1 -0.2797 -9.6165 -0.8942 37 1 -0.2801 -9.6169 0.8857 38 1 2.0494 -10.9432 -0.0045 39 1 2.0462 -13.2794 0.0712 40 1 -1.1477 -13.6716 -1.3771 41 1 -2.3642 -15.8018 -1.5755 42 1 -1.5259 -17.8117 -0.4288 43 1 0.5311 -17.6980 0.9176 44 1 1.7570 -15.5734 1.1190 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163575461.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:30 Heat of formation + Delta-G solvation = -27.035256 kcal Electronic energy + Delta-G solvation = -24486.002678 eV Core-core repulsion = 20631.632888 eV Total energy + Delta-G solvation = -3854.369790 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.12700 -39.99615 -38.87379 -36.26555 -35.21014 -34.85171 -34.45430 -32.12816 -31.25583 -30.37247 -29.64126 -27.75520 -25.08019 -23.40314 -22.91084 -22.49451 -21.34875 -21.17104 -20.59929 -19.16308 -18.28753 -17.18202 -16.82836 -16.60772 -16.47254 -16.26161 -15.74045 -15.35484 -15.06570 -14.79384 -14.54340 -14.39836 -14.23583 -13.72639 -13.50713 -13.37247 -13.31077 -13.04563 -13.00428 -12.40746 -12.06917 -11.73760 -11.63334 -11.03789 -10.96853 -10.86343 -10.82415 -10.68104 -10.52982 -10.26276 -10.05830 -9.74164 -9.65286 -9.27826 -9.25650 -8.91280 -8.46962 -6.97218 -5.80342 -3.09584 0.94122 1.06298 1.99292 2.27170 2.67273 2.95463 3.41955 3.47145 3.48828 3.50169 3.70938 4.35024 4.53065 4.55966 4.60582 4.81557 4.94079 4.94341 5.02511 5.05613 5.17182 5.21525 5.21855 5.53329 5.54018 5.63819 5.79354 5.87627 5.88069 5.97046 5.97300 6.12064 6.14774 6.22496 6.25066 6.26172 6.45289 6.68921 6.72636 6.76893 7.19907 7.43175 7.67051 7.86557 8.03352 8.38469 9.49739 10.06288 10.40816 11.42580 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.058555 B = 0.001393 C = 0.001368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.069967 B =20097.884303 C =20468.529872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.734 5.734 10 C 0.156 3.844 11 C -0.139 4.139 12 C 0.122 3.878 13 N -0.719 5.719 14 C 0.507 3.493 15 O -0.542 6.542 16 C 0.118 3.882 17 N -0.728 5.728 18 C 0.708 3.292 19 O -0.573 6.573 20 N -0.686 5.686 21 C 0.168 3.832 22 C -0.121 4.121 23 C -0.100 4.100 24 C -0.140 4.140 25 C -0.101 4.101 26 C -0.150 4.150 27 H 0.255 0.745 28 H 0.384 0.616 29 H 0.022 0.978 30 H 0.022 0.978 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.405 0.595 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.410 0.590 39 H 0.409 0.591 40 H 0.136 0.864 41 H 0.125 0.875 42 H 0.122 0.878 43 H 0.125 0.875 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.376 -34.573 -0.436 34.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.378 5.378 10 C 0.028 3.972 11 C -0.177 4.177 12 C -0.001 4.001 13 N -0.370 5.370 14 C 0.292 3.708 15 O -0.420 6.420 16 C -0.010 4.010 17 N -0.387 5.387 18 C 0.408 3.592 19 O -0.449 6.449 20 N -0.333 5.333 21 C 0.073 3.927 22 C -0.142 4.142 23 C -0.119 4.119 24 C -0.159 4.159 25 C -0.119 4.119 26 C -0.171 4.171 27 H 0.065 0.935 28 H 0.217 0.783 29 H 0.040 0.960 30 H 0.039 0.961 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.240 0.760 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.248 0.752 39 H 0.245 0.755 40 H 0.154 0.846 41 H 0.143 0.857 42 H 0.140 0.860 43 H 0.143 0.857 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.459 -34.466 -0.438 34.472 hybrid contribution 0.608 1.163 0.096 1.316 sum 0.150 -33.303 -0.342 33.305 Atomic orbital electron populations 1.69657 1.05147 1.25736 1.57703 1.24752 0.95547 0.97763 1.02875 0.86168 0.78662 0.83677 0.77556 1.21665 1.21718 1.20710 1.19245 0.91109 0.84115 1.42858 0.91088 1.42330 1.05865 0.99958 1.89642 1.20515 0.93240 0.85201 0.98226 1.21958 0.99633 0.93184 1.02913 1.21425 0.91620 0.84380 1.02685 1.45974 1.11260 1.05452 1.74350 1.20425 0.89490 0.84387 0.76485 1.90704 1.16643 1.84527 1.50079 1.20944 0.93618 0.81173 1.05262 1.44713 1.10965 1.03470 1.79522 1.15747 0.85438 0.80124 0.77910 1.90972 1.11170 1.86196 1.56571 1.42561 1.10356 1.03465 1.76927 1.17506 0.94290 0.84350 0.96544 1.21225 0.95464 0.98864 0.98627 1.21073 0.99503 0.92208 0.99091 1.21147 0.97077 0.98650 0.99014 1.20927 0.95224 0.97114 0.98667 1.20872 1.02267 0.92630 1.01288 0.93473 0.78278 0.96049 0.96059 0.91138 0.91148 0.91093 0.91097 0.76001 0.88050 0.88060 0.75228 0.75544 0.84577 0.85712 0.86018 0.85707 0.85736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.03 13.06 55.49 0.72 -27.30 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.24 -6.76 9.99 -15.06 -0.15 -6.92 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -18.31 5.60 -59.91 -0.34 -18.65 16 10 C 0.16 3.00 6.26 -4.04 -0.03 2.98 16 11 C -0.14 -1.97 5.44 -26.74 -0.15 -2.11 16 12 C 0.12 1.48 5.67 -4.04 -0.02 1.46 16 13 N -0.72 -6.95 5.56 -60.30 -0.33 -7.29 16 14 C 0.51 5.20 7.90 -10.99 -0.09 5.11 16 15 O -0.54 -7.30 15.67 5.56 0.09 -7.21 16 16 C 0.12 0.96 6.15 -5.20 -0.03 0.93 16 17 N -0.73 -6.15 5.53 -66.42 -0.37 -6.52 16 18 C 0.71 7.00 8.30 -86.93 -0.72 6.28 16 19 O -0.57 -7.50 14.03 5.28 0.07 -7.42 16 20 N -0.69 -5.21 5.35 -14.22 -0.08 -5.29 16 21 C 0.17 1.46 6.28 -83.69 -0.53 0.93 16 22 C -0.12 -1.16 8.66 -39.40 -0.34 -1.50 16 23 C -0.10 -0.78 10.04 -39.61 -0.40 -1.18 16 24 C -0.14 -0.93 10.04 -39.55 -0.40 -1.33 16 25 C -0.10 -0.64 10.04 -39.61 -0.40 -1.04 16 26 C -0.15 -1.04 9.96 -39.40 -0.39 -1.43 16 27 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.38 9.96 7.67 -40.82 -0.31 9.65 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.41 2.93 8.47 -40.82 -0.35 2.59 16 36 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.41 3.16 7.46 -40.82 -0.30 2.86 16 39 H 0.41 1.88 8.83 -40.82 -0.36 1.52 16 40 H 0.14 1.47 6.40 -52.49 -0.34 1.13 16 41 H 0.12 0.75 8.06 -52.48 -0.42 0.32 16 42 H 0.12 0.55 8.06 -52.48 -0.42 0.13 16 43 H 0.12 0.51 8.06 -52.48 -0.42 0.09 16 44 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 LS Contribution 378.25 15.07 5.70 5.70 Total: -1.00 -35.42 378.25 -9.56 -44.99 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -6.28 Total: 10.05 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -3.73 Total: 1.70 kcal Atomic # 7 Polarization: -64.66 SS G_CDS: -0.39 Total: -65.05 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: 0.16 Total: -14.63 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.42 -9.56 -44.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163575461.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.952 kcal (2) G-P(sol) polarization free energy of solvation -35.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds