Wall clock time and date at job start Tue Mar 31 2020 12:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 120.00117 * 2 1 4 4 H 1.48499 * 109.47134 * 270.00681 * 3 2 1 5 5 H 1.48510 * 109.47035 * 30.00390 * 3 2 1 6 6 H 1.48493 * 109.47176 * 150.00136 * 3 2 1 7 7 C 1.38816 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99575 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99888 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99677 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47030 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47043 * 180.02562 * 11 10 9 13 13 N 1.46507 * 109.47253 * 180.02562 * 12 11 10 14 14 C 1.34778 * 120.00312 * 180.02562 * 13 12 11 15 15 O 1.21276 * 119.99603 * 359.97438 * 14 13 12 16 16 C 1.50693 * 119.99968 * 179.97438 * 14 13 12 17 17 N 1.46502 * 109.47286 * 179.97438 * 16 14 13 18 18 C 1.34771 * 120.00527 * 179.97438 * 17 16 14 19 19 O 1.21596 * 119.99653 * 359.97438 * 18 17 16 20 20 N 1.34773 * 120.00351 * 179.97438 * 18 17 16 21 21 C 1.39952 * 120.00158 * 185.31915 * 20 18 17 22 22 C 1.38863 * 120.07100 * 33.31000 * 21 20 18 23 23 C 1.38107 * 119.93134 * 179.97438 * 22 21 20 24 24 C 1.38286 * 120.06964 * 359.97438 * 23 22 21 25 25 C 1.38276 * 120.13608 * 0.04779 * 24 23 22 26 26 C 1.38112 * 120.07571 * 359.95397 * 25 24 23 27 27 H 0.96996 * 120.00220 * 359.97438 * 1 2 3 28 28 H 0.97000 * 120.00001 * 359.97438 * 9 7 2 29 29 H 1.09000 * 109.47259 * 59.99686 * 10 9 7 30 30 H 1.09003 * 109.46948 * 300.00167 * 10 9 7 31 31 H 1.09000 * 109.47558 * 59.99622 * 11 10 9 32 32 H 1.09003 * 109.47189 * 299.99772 * 11 10 9 33 33 H 1.08995 * 109.47482 * 59.99820 * 12 11 10 34 34 H 1.09003 * 109.47356 * 299.99317 * 12 11 10 35 35 H 0.96999 * 119.99789 * 359.97438 * 13 12 11 36 36 H 1.09000 * 109.47456 * 59.99424 * 16 14 13 37 37 H 1.09003 * 109.47427 * 299.99491 * 16 14 13 38 38 H 0.97009 * 119.99642 * 0.02562 * 17 16 14 39 39 H 0.96998 * 120.00170 * 5.32036 * 20 18 17 40 40 H 1.08002 * 120.03070 * 359.70685 * 22 21 20 41 41 H 1.08003 * 119.96669 * 179.97438 * 23 22 21 42 42 H 1.08004 * 119.93091 * 180.02562 * 24 23 22 43 43 H 1.08004 * 119.95999 * 179.97438 * 25 24 23 44 44 H 1.08000 * 120.03932 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4477 2.6526 0.7002 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 6 1.0639 -4.8197 -0.0021 12 6 1.8288 -6.1447 -0.0026 13 7 0.8768 -7.2583 -0.0036 14 6 1.3261 -8.5290 -0.0037 15 8 2.5184 -8.7506 -0.0034 16 6 0.3468 -9.6744 -0.0041 17 7 1.0793 -10.9432 -0.0048 18 6 0.4055 -12.1103 -0.0047 19 8 -0.8105 -12.1103 -0.0037 20 7 1.0793 -13.2775 -0.0058 21 6 0.3840 -14.4869 -0.1181 22 6 -0.7772 -14.5540 -0.8767 23 6 -1.4608 -15.7491 -0.9860 24 6 -0.9897 -16.8782 -0.3414 25 6 0.1660 -16.8145 0.4150 26 6 0.8542 -15.6224 0.5283 27 1 -0.4850 0.8400 0.0004 28 1 0.3555 -2.3881 0.0002 29 1 2.6855 -3.7150 0.8878 30 1 2.6841 -3.7141 -0.8922 31 1 0.4368 -4.7614 -0.8917 32 1 0.4375 -4.7626 0.8882 33 1 2.4556 -6.2028 0.8872 34 1 2.4554 -6.2022 -0.8927 35 1 -0.0768 -7.0811 -0.0034 36 1 -0.2797 -9.6165 -0.8942 37 1 -0.2801 -9.6169 0.8857 38 1 2.0494 -10.9432 -0.0045 39 1 2.0462 -13.2794 0.0712 40 1 -1.1477 -13.6716 -1.3771 41 1 -2.3642 -15.8018 -1.5755 42 1 -1.5259 -17.8117 -0.4288 43 1 0.5311 -17.6980 0.9176 44 1 1.7570 -15.5734 1.1190 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163575461.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:29 Heat of formation + Delta-G solvation = -53.868535 kcal Electronic energy + Delta-G solvation = -24487.166256 eV Core-core repulsion = 20631.632888 eV Total energy + Delta-G solvation = -3855.533368 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.83454 -40.82349 -39.51303 -37.57164 -36.04890 -35.84035 -35.56279 -33.79690 -31.79455 -31.61060 -30.62420 -28.66835 -26.63624 -24.45934 -23.87515 -23.32687 -22.58646 -21.85814 -21.57710 -19.90024 -19.18416 -18.85457 -17.56993 -17.51964 -17.27711 -17.01769 -16.62767 -16.56457 -16.08350 -15.88865 -15.59446 -15.28282 -15.23482 -14.87710 -14.76223 -14.33883 -14.22482 -14.15607 -13.78997 -13.45449 -13.30409 -12.81810 -12.61857 -12.59246 -12.42868 -12.15965 -12.07634 -12.04401 -11.80085 -11.56415 -11.22524 -11.13758 -10.94359 -10.39047 -10.14989 -9.83184 -9.05251 -9.01611 -7.96768 -5.25791 0.37392 0.50567 1.31072 1.44174 1.48192 1.49528 1.58122 1.94651 2.14390 2.56333 2.94277 3.09485 3.37494 3.57694 3.76692 4.02675 4.09220 4.11097 4.29228 4.31521 4.32806 4.34829 4.45336 4.56408 4.61499 4.65706 4.73513 4.74226 4.87734 5.11402 5.15970 5.25807 5.32237 5.32624 5.37227 5.41985 5.49107 5.60575 5.67227 5.84961 6.13734 6.25994 6.40818 6.81346 7.06477 7.32691 7.32977 8.07941 8.31042 9.26676 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.058555 B = 0.001393 C = 0.001368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.069967 B =20097.884303 C =20468.529872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.073 4.073 3 Si 0.974 3.026 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.270 1.270 7 C -0.251 4.251 8 H 0.075 0.925 9 N -0.747 5.747 10 C 0.151 3.849 11 C -0.120 4.120 12 C 0.134 3.866 13 N -0.710 5.710 14 C 0.512 3.488 15 O -0.574 6.574 16 C 0.123 3.877 17 N -0.723 5.723 18 C 0.705 3.295 19 O -0.608 6.608 20 N -0.675 5.675 21 C 0.148 3.852 22 C -0.146 4.146 23 C -0.111 4.111 24 C -0.142 4.142 25 C -0.102 4.102 26 C -0.151 4.151 27 H 0.252 0.748 28 H 0.376 0.624 29 H 0.022 0.978 30 H 0.022 0.978 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.419 0.581 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.415 0.585 39 H 0.423 0.577 40 H 0.115 0.885 41 H 0.135 0.865 42 H 0.145 0.855 43 H 0.152 0.848 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.395 -36.203 -0.002 36.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.266 4.266 3 Si 0.802 3.198 4 H -0.213 1.213 5 H -0.221 1.221 6 H -0.195 1.195 7 C -0.383 4.383 8 H 0.093 0.907 9 N -0.390 5.390 10 C 0.024 3.976 11 C -0.159 4.159 12 C 0.010 3.990 13 N -0.362 5.362 14 C 0.299 3.701 15 O -0.454 6.454 16 C -0.004 4.004 17 N -0.381 5.381 18 C 0.406 3.594 19 O -0.487 6.487 20 N -0.323 5.323 21 C 0.053 3.947 22 C -0.167 4.167 23 C -0.130 4.130 24 C -0.161 4.161 25 C -0.120 4.120 26 C -0.171 4.171 27 H 0.061 0.939 28 H 0.208 0.792 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.256 0.744 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.253 0.747 39 H 0.261 0.739 40 H 0.133 0.867 41 H 0.153 0.847 42 H 0.163 0.837 43 H 0.170 0.830 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.353 -36.132 -0.004 36.134 hybrid contribution 0.397 1.559 -0.041 1.610 sum 0.750 -34.572 -0.046 34.581 Atomic orbital electron populations 1.69803 1.06573 1.26172 1.59330 1.25566 0.96424 1.01104 1.03481 0.85141 0.77729 0.79411 0.77486 1.21337 1.22054 1.19470 1.19658 0.91588 0.85460 1.41545 0.90681 1.42547 1.05736 1.01190 1.89558 1.20696 0.94128 0.84754 0.98022 1.21716 0.98518 0.92256 1.03369 1.21127 0.91550 0.84037 1.02297 1.45802 1.11710 1.04774 1.73932 1.20686 0.89250 0.84708 0.75484 1.90694 1.18128 1.84975 1.51604 1.20961 0.93001 0.80096 1.06376 1.44661 1.11136 1.03242 1.79088 1.15868 0.85079 0.80771 0.77711 1.90948 1.12756 1.86734 1.58280 1.42428 1.10987 1.02697 1.76223 1.17729 0.94542 0.85129 0.97265 1.21219 0.96675 0.98907 0.99903 1.21287 0.99939 0.92171 0.99563 1.21477 0.97294 0.99042 0.98285 1.21330 0.94796 0.97810 0.98102 1.21166 1.02943 0.92147 1.00869 0.93927 0.79248 0.95956 0.95964 0.90691 0.90697 0.91549 0.91567 0.74372 0.86882 0.86928 0.74709 0.73910 0.86739 0.84668 0.83725 0.83003 0.83570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.59 13.06 21.65 0.28 -58.31 16 2 C -0.07 -4.18 5.50 84.86 0.47 -3.72 16 3 Si 0.97 45.72 29.55 68.60 2.03 47.75 16 4 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 5 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 6 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 7 C -0.25 -13.95 9.99 84.03 0.84 -13.11 16 8 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 9 N -0.75 -37.25 5.60 -343.44 -1.92 -39.17 16 10 C 0.15 5.69 6.26 86.38 0.54 6.24 16 11 C -0.12 -3.27 5.44 30.59 0.17 -3.11 16 12 C 0.13 3.07 5.67 86.38 0.49 3.56 16 13 N -0.71 -12.57 5.56 -463.07 -2.57 -15.14 16 14 C 0.51 9.84 7.90 87.65 0.69 10.53 16 15 O -0.57 -14.92 15.67 -3.02 -0.05 -14.97 16 16 C 0.12 1.85 6.15 85.63 0.53 2.38 16 17 N -0.72 -11.69 5.53 -482.30 -2.67 -14.36 16 18 C 0.71 13.82 8.30 179.06 1.49 15.31 16 19 O -0.61 -16.17 14.03 -4.02 -0.06 -16.23 16 20 N -0.67 -9.97 5.35 -317.18 -1.70 -11.67 16 21 C 0.15 2.51 6.28 38.14 0.24 2.75 16 22 C -0.15 -2.88 8.66 22.39 0.19 -2.68 16 23 C -0.11 -1.70 10.04 22.25 0.22 -1.48 16 24 C -0.14 -1.66 10.04 22.29 0.22 -1.43 16 25 C -0.10 -1.07 10.04 22.25 0.22 -0.84 16 26 C -0.15 -1.84 9.96 22.39 0.22 -1.62 16 27 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 28 H 0.38 19.63 7.67 -92.71 -0.71 18.92 16 29 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.42 5.23 8.47 -92.71 -0.79 4.44 16 36 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.41 6.06 7.46 -92.70 -0.69 5.37 16 39 H 0.42 3.50 8.83 -92.71 -0.82 2.68 16 40 H 0.11 2.68 6.40 -2.91 -0.02 2.66 16 41 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 42 H 0.14 0.95 8.06 -2.91 -0.02 0.92 16 43 H 0.15 0.72 8.06 -2.91 -0.02 0.70 16 44 H 0.15 1.06 8.06 -2.91 -0.02 1.03 16 Total: -1.00 -76.14 378.25 -2.07 -78.21 By element: Atomic # 1 Polarization: 33.06 SS G_CDS: -1.95 Total: 31.11 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: 6.54 Total: 12.78 kcal Atomic # 7 Polarization: -130.06 SS G_CDS: -8.58 Total: -138.64 kcal Atomic # 8 Polarization: -31.10 SS G_CDS: -0.10 Total: -31.20 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -76.14 -2.07 -78.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163575461.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.341 kcal (2) G-P(sol) polarization free energy of solvation -76.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds