Wall clock time and date at job start Tue Mar 31 2020 12:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34236 * 116.99775 * 2 1 4 4 O 1.20819 * 120.00002 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99872 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.87530 * 41.03208 * 5 3 2 7 7 C 1.54310 * 109.89133 * 280.00055 * 5 3 2 8 8 C 1.55143 * 103.02280 * 218.14734 * 7 5 3 9 9 H 1.08997 * 110.99228 * 277.52411 * 8 7 5 10 10 N 1.46492 * 110.99343 * 153.74057 * 8 7 5 11 11 C 1.39936 * 120.00151 * 155.00381 * 10 8 7 12 12 C 1.38861 * 120.02297 * 180.02562 * 11 10 8 13 13 C 1.38108 * 119.98478 * 179.97438 * 12 11 10 14 14 C 1.38698 * 120.01780 * 359.97438 * 13 12 11 15 15 O 1.35998 * 119.98280 * 180.02562 * 14 13 12 16 16 C 1.42905 * 117.00284 * 180.02562 * 15 14 13 17 17 C 1.50694 * 109.47179 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00563 * 359.97438 * 17 16 15 19 19 C 1.37885 * 119.99902 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99913 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99854 * 179.72538 * 19 17 16 22 22 H 1.48504 * 109.47032 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46816 * 120.00323 * 21 19 17 24 24 H 1.48495 * 109.46630 * 240.00111 * 21 19 17 25 25 C 1.38703 * 120.03755 * 0.27883 * 14 13 12 26 26 C 1.38108 * 120.01647 * 359.49086 * 25 14 13 27 27 C 1.54911 * 101.64809 * 35.64996 * 8 7 5 28 28 N 1.47445 * 110.02462 * 162.14606 * 5 3 2 29 29 H 1.09001 * 109.47205 * 60.00371 * 1 2 3 30 30 H 1.09004 * 109.47164 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47194 * 300.00144 * 1 2 3 32 32 H 1.08999 * 110.71309 * 99.76221 * 7 5 3 33 33 H 1.09005 * 110.85572 * 336.60388 * 7 5 3 34 34 H 0.97004 * 120.00442 * 335.00620 * 10 8 7 35 35 H 1.08006 * 120.00749 * 359.97438 * 12 11 10 36 36 H 1.08001 * 119.99518 * 180.02562 * 13 12 11 37 37 H 1.08998 * 109.46937 * 59.99766 * 16 15 14 38 38 H 1.09002 * 109.46814 * 299.99576 * 16 15 14 39 39 H 0.97001 * 119.99646 * 180.02562 * 20 19 17 40 40 H 1.08002 * 119.99196 * 179.71778 * 25 14 13 41 41 H 1.08007 * 120.00644 * 180.25607 * 26 25 14 42 42 H 1.09000 * 110.37405 * 81.76349 * 27 8 7 43 43 H 1.09002 * 110.37301 * 204.09902 * 27 8 7 44 44 H 1.00896 * 110.99854 * 356.22610 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9771 0.5220 -0.6721 7 6 4.1032 1.0511 1.4298 8 6 5.2894 2.0472 1.5177 9 1 6.1882 1.6246 1.0687 10 7 5.5373 2.4470 2.9050 11 6 6.8089 2.8864 3.2900 12 6 7.0446 3.2649 4.6050 13 6 8.3000 3.6979 4.9842 14 6 9.3255 3.7542 4.0520 15 8 10.5616 4.1803 4.4263 16 6 11.5703 4.2136 3.4146 17 6 12.8630 4.7085 4.0102 18 1 12.9097 4.9718 5.0566 19 6 13.9864 4.8254 3.2193 20 7 13.9295 4.5053 1.9449 21 14 15.5869 5.4462 3.9559 22 1 15.3865 5.7417 5.3974 23 1 16.6369 4.4070 3.8054 24 1 16.0095 6.6827 3.2506 25 6 9.0896 3.3813 2.7370 26 6 7.8360 2.9435 2.3573 27 6 4.7590 3.2395 0.6829 28 7 4.0016 2.6181 -0.4242 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 4.4510 0.0257 1.5548 33 1 3.3422 1.2915 2.1724 34 1 4.8201 2.4071 3.5569 35 1 6.2463 3.2207 5.3312 36 1 8.4836 3.9920 6.0071 37 1 11.2594 4.8843 2.6136 38 1 11.7154 3.2107 3.0130 39 1 14.7199 4.5872 1.3886 40 1 9.8875 3.4298 2.0107 41 1 7.6537 2.6493 1.3342 42 1 4.1022 3.8643 1.2883 43 1 5.5890 3.8278 0.2917 44 1 3.2115 3.1881 -0.6865 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164308309.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:05 Heat of formation + Delta-G solvation = -88.016993 kcal Electronic energy + Delta-G solvation = -25719.381541 eV Core-core repulsion = 21830.074634 eV Total energy + Delta-G solvation = -3889.306907 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.29842 -39.62685 -38.73738 -37.18538 -36.64171 -34.13711 -32.79988 -30.66547 -30.54718 -29.81118 -28.08540 -27.64957 -26.40795 -23.70728 -23.36970 -22.41590 -21.08369 -20.88143 -20.42390 -18.53691 -17.68623 -17.61447 -16.95459 -16.70893 -16.46721 -15.85840 -15.70031 -14.89993 -14.58074 -14.46462 -14.32184 -13.99327 -13.90194 -13.69508 -13.54859 -13.10043 -13.03289 -12.80006 -12.61957 -12.38128 -12.27307 -11.93511 -11.74846 -11.62799 -11.51577 -11.34775 -11.05349 -10.91263 -10.90187 -10.44937 -10.37938 -10.08278 -9.19276 -9.16764 -8.99830 -8.58301 -8.45615 -6.68408 -6.20691 -4.23611 1.58420 1.78960 2.12742 2.14233 3.23216 3.25487 3.32061 3.38268 3.85852 4.01298 4.22590 4.23795 4.26907 4.40459 4.58217 4.60391 4.67120 4.67998 4.84635 4.93010 5.02015 5.16533 5.27592 5.29932 5.32313 5.34605 5.60353 5.71546 5.79228 5.81983 5.91096 5.97556 6.20417 6.40501 6.59047 6.64778 6.78797 6.86325 7.08051 7.14655 7.15547 7.23093 7.52558 7.73186 7.81492 8.02741 8.59784 8.92122 9.41601 10.90686 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.032401 B = 0.001954 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.970612 B =14326.513312 C =14853.194229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.354 6.354 3 C 0.450 3.550 4 O -0.508 6.508 5 C 0.087 3.913 6 H 0.126 0.874 7 C -0.137 4.137 8 C 0.153 3.847 9 H 0.103 0.897 10 N -0.746 5.746 11 C 0.152 3.848 12 C -0.152 4.152 13 C -0.126 4.126 14 C 0.106 3.894 15 O -0.322 6.322 16 C 0.194 3.806 17 C -0.521 4.521 18 H 0.070 0.930 19 C 0.059 3.941 20 N -0.895 5.895 21 Si 0.912 3.088 22 H -0.269 1.269 23 H -0.281 1.281 24 H -0.281 1.281 25 C -0.166 4.166 26 C -0.150 4.150 27 C 0.024 3.976 28 N -0.657 5.657 29 H 0.064 0.936 30 H 0.104 0.896 31 H 0.063 0.937 32 H 0.097 0.903 33 H 0.076 0.924 34 H 0.395 0.605 35 H 0.117 0.883 36 H 0.124 0.876 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.266 0.734 40 H 0.133 0.867 41 H 0.118 0.882 42 H 0.052 0.948 43 H 0.094 0.906 44 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.034 -9.701 -3.743 28.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.269 6.269 3 C 0.291 3.709 4 O -0.395 6.395 5 C -0.025 4.025 6 H 0.144 0.856 7 C -0.176 4.176 8 C 0.045 3.955 9 H 0.121 0.879 10 N -0.380 5.380 11 C 0.054 3.946 12 C -0.174 4.174 13 C -0.145 4.145 14 C 0.058 3.942 15 O -0.236 6.236 16 C 0.121 3.879 17 C -0.559 4.559 18 H 0.088 0.912 19 C -0.143 4.143 20 N -0.533 5.533 21 Si 0.739 3.261 22 H -0.194 1.194 23 H -0.207 1.207 24 H -0.207 1.207 25 C -0.186 4.186 26 C -0.172 4.172 27 C -0.107 4.107 28 N -0.292 5.292 29 H 0.083 0.917 30 H 0.122 0.878 31 H 0.082 0.918 32 H 0.116 0.884 33 H 0.095 0.905 34 H 0.229 0.771 35 H 0.135 0.865 36 H 0.142 0.858 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.075 0.925 40 H 0.151 0.849 41 H 0.136 0.864 42 H 0.070 0.930 43 H 0.112 0.888 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -25.471 -9.587 -4.268 27.548 hybrid contribution -0.466 0.532 0.724 1.012 sum -25.937 -9.055 -3.544 27.700 Atomic orbital electron populations 1.23327 0.76054 1.03989 1.02673 1.86531 1.23682 1.33084 1.83618 1.24544 0.92915 0.81622 0.71778 1.90668 1.66855 1.36453 1.45549 1.22164 0.85423 0.96141 0.98733 0.85647 1.22986 0.98345 1.02180 0.94087 1.21818 0.97632 0.92587 0.83423 0.87898 1.44204 1.09621 1.75606 1.08544 1.17527 0.85175 0.98662 0.93211 1.20227 0.96936 1.06052 0.94158 1.20164 0.91127 1.04049 0.99143 1.19090 0.86935 0.95758 0.92414 1.86111 1.16460 1.79680 1.41328 1.20570 0.84065 0.96857 0.86401 1.21037 0.92950 1.44679 0.97272 0.91171 1.24940 0.99320 0.95261 0.94778 1.69963 1.30140 1.47924 1.05317 0.86214 0.82091 0.78424 0.79402 1.19379 1.20720 1.20713 1.21272 0.97850 1.03277 0.96181 1.20433 0.92353 1.05830 0.98610 1.23514 0.98382 0.97368 0.91402 1.62338 1.27852 1.02346 1.36628 0.91707 0.87801 0.91838 0.88409 0.90541 0.77108 0.86477 0.85753 0.96302 0.96303 0.92462 0.84943 0.86396 0.92952 0.88804 0.82392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.56 101.05 1.07 1.24 16 2 O -0.35 -2.72 10.57 -39.27 -0.41 -3.14 16 3 C 0.45 3.95 7.04 36.01 0.25 4.20 16 4 O -0.51 -5.70 15.34 -18.74 -0.29 -5.99 16 5 C 0.09 0.66 4.00 -67.88 -0.27 0.39 16 6 H 0.13 0.79 8.14 -51.93 -0.42 0.36 16 7 C -0.14 -0.96 6.10 -24.91 -0.15 -1.11 16 8 C 0.15 1.37 3.15 -65.79 -0.21 1.17 16 9 H 0.10 0.99 6.36 -51.93 -0.33 0.66 16 10 N -0.75 -7.62 5.38 -50.07 -0.27 -7.89 16 11 C 0.15 2.10 6.66 -83.70 -0.56 1.54 16 12 C -0.15 -2.16 9.89 -39.40 -0.39 -2.55 16 13 C -0.13 -2.16 9.98 -39.46 -0.39 -2.56 16 14 C 0.11 2.19 6.69 -39.24 -0.26 1.93 16 15 O -0.32 -7.96 10.12 -19.74 -0.20 -8.16 16 16 C 0.19 5.23 4.49 36.00 0.16 5.39 16 17 C -0.52 -15.07 9.43 -34.44 -0.32 -15.39 16 18 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -26.11 13.29 55.43 0.74 -25.38 16 21 Si 0.91 21.44 29.54 -169.99 -5.02 16.41 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 C -0.17 -3.17 9.03 -39.46 -0.36 -3.52 16 26 C -0.15 -2.33 9.22 -39.40 -0.36 -2.69 16 27 C 0.02 0.23 7.27 -2.30 -0.02 0.21 16 28 N -0.66 -5.92 7.34 -105.03 -0.77 -6.69 16 29 H 0.06 0.34 8.13 -51.93 -0.42 -0.08 16 30 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.33 8.13 -51.93 -0.42 -0.09 16 32 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.53 7.71 -51.93 -0.40 0.13 16 34 H 0.39 3.39 8.58 -40.82 -0.35 3.04 16 35 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 36 H 0.12 1.99 8.06 -52.49 -0.42 1.57 16 37 H 0.02 0.53 7.65 -51.93 -0.40 0.13 16 38 H 0.02 0.53 7.67 -51.93 -0.40 0.13 16 39 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.13 2.68 6.29 -52.49 -0.33 2.35 16 41 H 0.12 1.59 6.18 -52.48 -0.32 1.26 16 42 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.36 3.39 7.18 -39.29 -0.28 3.11 16 LS Contribution 368.69 15.07 5.56 5.56 Total: -1.00 -32.09 368.69 -8.74 -40.83 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -6.16 Total: 4.62 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: -1.91 Total: -10.18 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: -0.30 Total: -39.95 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.90 Total: -17.29 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.09 -8.74 -40.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164308309.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.184 kcal (2) G-P(sol) polarization free energy of solvation -32.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds