Wall clock time and date at job start Tue Mar 31 2020 12:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34236 * 116.99775 * 2 1 4 4 O 1.20819 * 120.00002 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99872 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.87530 * 41.03208 * 5 3 2 7 7 C 1.54310 * 109.89133 * 280.00055 * 5 3 2 8 8 C 1.55143 * 103.02280 * 218.14734 * 7 5 3 9 9 H 1.08997 * 110.99228 * 277.52411 * 8 7 5 10 10 N 1.46492 * 110.99343 * 153.74057 * 8 7 5 11 11 C 1.39936 * 120.00151 * 155.00381 * 10 8 7 12 12 C 1.38861 * 120.02297 * 180.02562 * 11 10 8 13 13 C 1.38108 * 119.98478 * 179.97438 * 12 11 10 14 14 C 1.38698 * 120.01780 * 359.97438 * 13 12 11 15 15 O 1.35998 * 119.98280 * 180.02562 * 14 13 12 16 16 C 1.42905 * 117.00284 * 180.02562 * 15 14 13 17 17 C 1.50694 * 109.47179 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00563 * 359.97438 * 17 16 15 19 19 C 1.37885 * 119.99902 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99913 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99854 * 179.72538 * 19 17 16 22 22 H 1.48504 * 109.47032 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46816 * 120.00323 * 21 19 17 24 24 H 1.48495 * 109.46630 * 240.00111 * 21 19 17 25 25 C 1.38703 * 120.03755 * 0.27883 * 14 13 12 26 26 C 1.38108 * 120.01647 * 359.49086 * 25 14 13 27 27 C 1.54911 * 101.64809 * 35.64996 * 8 7 5 28 28 N 1.47445 * 110.02462 * 162.14606 * 5 3 2 29 29 H 1.09001 * 109.47205 * 60.00371 * 1 2 3 30 30 H 1.09004 * 109.47164 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47194 * 300.00144 * 1 2 3 32 32 H 1.08999 * 110.71309 * 99.76221 * 7 5 3 33 33 H 1.09005 * 110.85572 * 336.60388 * 7 5 3 34 34 H 0.97004 * 120.00442 * 335.00620 * 10 8 7 35 35 H 1.08006 * 120.00749 * 359.97438 * 12 11 10 36 36 H 1.08001 * 119.99518 * 180.02562 * 13 12 11 37 37 H 1.08998 * 109.46937 * 59.99766 * 16 15 14 38 38 H 1.09002 * 109.46814 * 299.99576 * 16 15 14 39 39 H 0.97001 * 119.99646 * 180.02562 * 20 19 17 40 40 H 1.08002 * 119.99196 * 179.71778 * 25 14 13 41 41 H 1.08007 * 120.00644 * 180.25607 * 26 25 14 42 42 H 1.09000 * 110.37405 * 81.76349 * 27 8 7 43 43 H 1.09002 * 110.37301 * 204.09902 * 27 8 7 44 44 H 1.00896 * 110.99854 * 356.22610 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9771 0.5220 -0.6721 7 6 4.1032 1.0511 1.4298 8 6 5.2894 2.0472 1.5177 9 1 6.1882 1.6246 1.0687 10 7 5.5373 2.4470 2.9050 11 6 6.8089 2.8864 3.2900 12 6 7.0446 3.2649 4.6050 13 6 8.3000 3.6979 4.9842 14 6 9.3255 3.7542 4.0520 15 8 10.5616 4.1803 4.4263 16 6 11.5703 4.2136 3.4146 17 6 12.8630 4.7085 4.0102 18 1 12.9097 4.9718 5.0566 19 6 13.9864 4.8254 3.2193 20 7 13.9295 4.5053 1.9449 21 14 15.5869 5.4462 3.9559 22 1 15.3865 5.7417 5.3974 23 1 16.6369 4.4070 3.8054 24 1 16.0095 6.6827 3.2506 25 6 9.0896 3.3813 2.7370 26 6 7.8360 2.9435 2.3573 27 6 4.7590 3.2395 0.6829 28 7 4.0016 2.6181 -0.4242 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 4.4510 0.0257 1.5548 33 1 3.3422 1.2915 2.1724 34 1 4.8201 2.4071 3.5569 35 1 6.2463 3.2207 5.3312 36 1 8.4836 3.9920 6.0071 37 1 11.2594 4.8843 2.6136 38 1 11.7154 3.2107 3.0130 39 1 14.7199 4.5872 1.3886 40 1 9.8875 3.4298 2.0107 41 1 7.6537 2.6493 1.3342 42 1 4.1022 3.8643 1.2883 43 1 5.5890 3.8278 0.2917 44 1 3.2115 3.1881 -0.6865 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164308309.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:04 Heat of formation + Delta-G solvation = -110.456917 kcal Electronic energy + Delta-G solvation = -25720.354609 eV Core-core repulsion = 21830.074634 eV Total energy + Delta-G solvation = -3890.279975 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.96554 -40.89901 -39.72714 -38.39603 -37.51533 -35.38475 -34.80429 -31.94384 -31.26867 -30.88829 -29.66357 -28.43786 -27.66581 -25.36699 -24.24314 -23.66748 -22.46336 -21.68068 -21.28057 -19.27048 -19.13687 -18.45386 -18.27745 -18.04728 -17.55997 -16.81280 -16.59594 -16.50344 -16.32990 -15.93900 -15.30275 -15.06540 -14.80665 -14.56020 -14.36057 -14.24769 -14.14241 -14.07817 -13.67191 -13.42557 -13.20562 -13.09500 -12.98279 -12.87905 -12.78222 -12.61406 -12.37825 -12.22280 -12.00210 -11.89712 -11.72476 -11.56253 -11.23347 -10.76497 -10.31107 -9.86925 -9.76253 -8.37134 -7.96855 -6.51029 0.46950 0.77120 0.92541 1.40152 1.41874 1.56633 1.57555 2.30205 2.35068 2.92078 2.95516 2.98535 3.15178 3.36051 3.62540 3.68558 3.88754 4.05244 4.08165 4.16387 4.24062 4.26964 4.29152 4.44134 4.54683 4.62766 4.66892 4.68647 4.76799 4.78980 4.90486 5.01627 5.03025 5.09637 5.20927 5.30241 5.37272 5.50345 5.52130 5.66026 5.80176 5.90562 6.04465 6.39332 6.51954 6.56888 6.88430 6.95748 7.22186 8.75477 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.032401 B = 0.001954 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.970612 B =14326.513312 C =14853.194229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.356 6.356 3 C 0.453 3.547 4 O -0.537 6.537 5 C 0.087 3.913 6 H 0.143 0.857 7 C -0.125 4.125 8 C 0.150 3.850 9 H 0.101 0.899 10 N -0.729 5.729 11 C 0.176 3.824 12 C -0.143 4.143 13 C -0.122 4.122 14 C 0.051 3.949 15 O -0.344 6.344 16 C 0.215 3.785 17 C -0.556 4.556 18 H 0.065 0.935 19 C 0.009 3.991 20 N -0.926 5.926 21 Si 0.989 3.011 22 H -0.263 1.263 23 H -0.269 1.269 24 H -0.270 1.270 25 C -0.179 4.179 26 C -0.154 4.154 27 C 0.027 3.973 28 N -0.662 5.662 29 H 0.062 0.938 30 H 0.133 0.867 31 H 0.061 0.939 32 H 0.117 0.883 33 H 0.081 0.919 34 H 0.409 0.591 35 H 0.158 0.842 36 H 0.134 0.866 37 H -0.004 1.004 38 H -0.003 1.003 39 H 0.273 0.727 40 H 0.105 0.895 41 H 0.137 0.863 42 H 0.048 0.952 43 H 0.081 0.919 44 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.782 -10.875 -3.061 29.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.270 6.270 3 C 0.296 3.704 4 O -0.427 6.427 5 C -0.024 4.024 6 H 0.160 0.840 7 C -0.164 4.164 8 C 0.042 3.958 9 H 0.119 0.881 10 N -0.363 5.363 11 C 0.076 3.924 12 C -0.165 4.165 13 C -0.141 4.141 14 C 0.004 3.996 15 O -0.259 6.259 16 C 0.141 3.859 17 C -0.593 4.593 18 H 0.084 0.916 19 C -0.190 4.190 20 N -0.565 5.565 21 Si 0.811 3.189 22 H -0.187 1.187 23 H -0.194 1.194 24 H -0.195 1.195 25 C -0.199 4.199 26 C -0.176 4.176 27 C -0.104 4.104 28 N -0.297 5.297 29 H 0.080 0.920 30 H 0.151 0.849 31 H 0.080 0.920 32 H 0.136 0.864 33 H 0.100 0.900 34 H 0.245 0.755 35 H 0.176 0.824 36 H 0.152 0.848 37 H 0.014 0.986 38 H 0.015 0.985 39 H 0.082 0.918 40 H 0.123 0.877 41 H 0.155 0.845 42 H 0.066 0.934 43 H 0.100 0.900 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -27.291 -10.799 -3.596 29.570 hybrid contribution -0.223 0.796 0.429 0.931 sum -27.514 -10.003 -3.168 29.447 Atomic orbital electron populations 1.23588 0.74713 1.05889 1.02513 1.86524 1.25024 1.32350 1.83144 1.24707 0.93253 0.81497 0.70939 1.90660 1.67540 1.37427 1.47042 1.22286 0.84896 0.95638 0.99572 0.83956 1.22940 0.97269 1.02528 0.93695 1.21901 0.98499 0.92975 0.82377 0.88108 1.44201 1.08434 1.74070 1.09547 1.17583 0.85975 0.96198 0.92691 1.20589 0.96545 1.04299 0.95086 1.20402 0.91286 1.03460 0.98983 1.19514 0.86314 0.99546 0.94218 1.86014 1.17920 1.81399 1.40600 1.20067 0.84680 0.94826 0.86329 1.21376 0.94414 1.46119 0.97415 0.91646 1.25988 1.03116 0.94761 0.95110 1.70071 1.31623 1.48108 1.06685 0.85055 0.76904 0.78232 0.78718 1.18734 1.19441 1.19528 1.21157 0.98832 1.04639 0.95263 1.20545 0.91370 1.05629 1.00069 1.23416 0.98005 0.97423 0.91566 1.62333 1.27858 1.02965 1.36495 0.91953 0.84926 0.91980 0.86431 0.90021 0.75461 0.82426 0.84793 0.98577 0.98482 0.91781 0.87655 0.84498 0.93364 0.90030 0.82787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.56 113.37 1.20 1.42 16 2 O -0.36 -4.65 10.57 -51.47 -0.54 -5.19 16 3 C 0.45 7.09 7.04 71.24 0.50 7.59 16 4 O -0.54 -11.43 15.34 21.99 0.34 -11.10 16 5 C 0.09 1.12 4.00 44.51 0.18 1.30 16 6 H 0.14 1.38 8.14 -2.39 -0.02 1.36 16 7 C -0.13 -1.34 6.10 31.77 0.19 -1.15 16 8 C 0.15 2.28 3.15 46.38 0.15 2.43 16 9 H 0.10 1.67 6.36 -2.39 -0.02 1.66 16 10 N -0.73 -12.43 5.38 -312.31 -1.68 -14.11 16 11 C 0.18 4.44 6.66 38.14 0.25 4.70 16 12 C -0.14 -3.70 9.89 22.39 0.22 -3.48 16 13 C -0.12 -4.16 9.98 22.35 0.22 -3.94 16 14 C 0.05 2.19 6.69 22.49 0.15 2.34 16 15 O -0.34 -18.16 10.12 -93.53 -0.95 -19.11 16 16 C 0.21 12.44 4.49 71.23 0.32 12.76 16 17 C -0.56 -33.57 9.43 25.60 0.24 -33.33 16 18 H 0.07 3.90 7.81 -2.91 -0.02 3.88 16 19 C 0.01 0.54 5.46 84.66 0.46 1.01 16 20 N -0.93 -55.58 13.29 21.45 0.28 -55.30 16 21 Si 0.99 44.34 29.54 68.60 2.03 46.36 16 22 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 23 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 24 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 25 C -0.18 -7.22 9.03 22.35 0.20 -7.02 16 26 C -0.15 -4.71 9.22 22.39 0.21 -4.50 16 27 C 0.03 0.46 7.27 86.78 0.63 1.09 16 28 N -0.66 -10.97 7.34 -486.21 -3.57 -14.54 16 29 H 0.06 0.56 8.13 -2.39 -0.02 0.55 16 30 H 0.13 0.32 8.14 -2.38 -0.02 0.30 16 31 H 0.06 0.55 8.13 -2.39 -0.02 0.53 16 32 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.08 0.84 7.71 -2.38 -0.02 0.82 16 34 H 0.41 5.23 8.58 -92.71 -0.80 4.44 16 35 H 0.16 2.83 8.06 -2.91 -0.02 2.81 16 36 H 0.13 4.21 8.06 -2.91 -0.02 4.19 16 37 H 0.00 -0.21 7.65 -2.39 -0.02 -0.23 16 38 H 0.00 -0.16 7.67 -2.39 -0.02 -0.17 16 39 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 40 H 0.11 4.71 6.29 -2.91 -0.02 4.69 16 41 H 0.14 3.58 6.18 -2.91 -0.02 3.56 16 42 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.35 6.41 7.18 -89.70 -0.64 5.77 16 Total: -1.00 -73.06 368.69 0.63 -72.42 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: -0.40 Total: 19.34 kcal Atomic # 6 Polarization: -23.90 SS G_CDS: 5.13 Total: -18.78 kcal Atomic # 7 Polarization: -78.98 SS G_CDS: -4.97 Total: -83.95 kcal Atomic # 8 Polarization: -34.25 SS G_CDS: -1.15 Total: -35.40 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -73.06 0.63 -72.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164308309.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.032 kcal (2) G-P(sol) polarization free energy of solvation -73.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds