Wall clock time and date at job start Tue Mar 31 2020 12:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38338 * 120.74915 * 2 1 4 4 C 1.50707 * 120.44939 * 0.02562 * 3 2 1 5 5 C 1.39089 * 119.09755 * 180.26164 * 3 2 1 6 6 N 1.39011 * 119.70450 * 179.72895 * 5 3 2 7 7 C 1.46952 * 111.00016 * 117.39394 * 6 5 3 8 8 C 1.53049 * 109.38258 * 183.17767 * 7 6 5 9 9 N 1.46963 * 109.36620 * 301.63196 * 8 7 6 10 10 C 1.46897 * 111.00180 * 183.16382 * 9 8 7 11 11 C 1.50706 * 109.46854 * 66.18289 * 10 9 8 12 12 H 1.08008 * 119.99686 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00271 * 180.02562 * 11 10 9 14 14 N 1.31519 * 119.99416 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00127 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46971 * 90.00160 * 15 13 11 17 17 H 1.48500 * 109.46846 * 209.99946 * 15 13 11 18 18 H 1.48491 * 109.47341 * 329.99778 * 15 13 11 19 19 C 1.46961 * 110.89557 * 59.28445 * 9 8 7 20 20 C 1.46955 * 110.99976 * 241.19613 * 6 5 3 21 21 N 1.32424 * 120.59160 * 359.45523 * 5 3 2 22 22 C 1.31946 * 121.62239 * 0.27763 * 21 5 3 23 23 C 1.38065 * 120.85270 * 359.97438 * 22 21 5 24 24 N 1.48003 * 120.33726 * 180.02562 * 23 22 21 25 25 O 1.21800 * 120.00316 * 144.36078 * 24 23 22 26 26 O 1.21802 * 119.99650 * 324.37245 * 24 23 22 27 27 H 1.09002 * 109.46821 * 265.21773 * 1 2 3 28 28 H 1.09004 * 109.46799 * 25.21372 * 1 2 3 29 29 H 1.08990 * 109.47262 * 145.21706 * 1 2 3 30 30 H 1.09002 * 109.47219 * 273.32983 * 4 3 2 31 31 H 1.08998 * 109.47142 * 33.33234 * 4 3 2 32 32 H 1.09001 * 109.46954 * 153.33232 * 4 3 2 33 33 H 1.08997 * 109.48897 * 303.15644 * 7 6 5 34 34 H 1.09004 * 109.48751 * 63.20118 * 7 6 5 35 35 H 1.08999 * 109.49247 * 61.57672 * 8 7 6 36 36 H 1.09001 * 109.49105 * 181.64453 * 8 7 6 37 37 H 1.08999 * 109.47242 * 186.17842 * 10 9 8 38 38 H 1.08999 * 109.47106 * 306.18509 * 10 9 8 39 39 H 0.97000 * 119.99766 * 180.02562 * 14 13 11 40 40 H 1.08995 * 109.48943 * 180.72040 * 19 9 8 41 41 H 1.09009 * 109.48616 * 60.66205 * 19 9 8 42 42 H 1.09005 * 109.49271 * 296.77503 * 20 6 5 43 43 H 1.08998 * 109.49090 * 56.82151 * 20 6 5 44 44 H 1.08000 * 119.57264 * 179.97438 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2144 1.1889 0.0000 4 6 1.4883 2.5095 0.0006 5 6 3.6047 1.1488 -0.0055 6 7 4.3280 2.3359 -0.0113 7 6 5.1460 2.4601 1.2031 8 6 5.8637 3.8119 1.1962 9 7 6.6970 3.9150 -0.0100 10 6 7.4613 5.1695 -0.0161 11 6 8.4642 5.1521 1.1087 12 1 8.5271 4.2950 1.7629 13 6 9.3007 6.2308 1.3032 14 7 9.2236 7.2746 0.5068 15 14 10.5432 6.2095 2.6978 16 1 11.8193 5.6234 2.2148 17 1 10.7828 7.5975 3.1684 18 1 10.0154 5.3910 3.8187 19 6 5.8789 3.7908 -1.2245 20 6 5.1616 2.4388 -1.2172 21 7 4.2455 -0.0100 0.0001 22 6 3.5971 -1.1591 0.0056 23 6 2.2168 -1.1933 0.0062 24 7 1.5011 -2.4887 0.0130 25 8 0.4564 -2.6042 0.6285 26 8 1.9569 -3.4395 -0.5968 27 1 -0.3633 -0.0857 1.0241 28 1 -0.3633 0.9298 -0.4378 29 1 -0.3633 -0.8439 -0.5862 30 1 1.2606 2.7994 -1.0252 31 1 0.5611 2.4141 0.5656 32 1 2.1182 3.2702 0.4618 33 1 4.5047 2.3934 2.0819 34 1 5.8829 1.6573 1.2289 35 1 5.1267 4.6149 1.1983 36 1 6.4937 3.8938 2.0819 37 1 7.9838 5.2719 -0.9672 38 1 6.7806 6.0103 0.1170 39 1 9.8123 8.0333 0.6434 40 1 6.5202 3.8576 -2.1033 41 1 5.1417 4.5934 -1.2500 42 1 5.8990 1.6360 -1.2192 43 1 4.5318 2.3561 -2.1029 44 1 4.1532 -2.0850 0.0097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165055472.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:45 Heat of formation + Delta-G solvation = 52.577092 kcal Electronic energy + Delta-G solvation = -27091.628898 eV Core-core repulsion = 23240.711358 eV Total energy + Delta-G solvation = -3850.917539 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.61293 -41.24494 -38.72818 -36.90210 -35.65678 -35.08531 -32.92820 -31.98422 -30.70913 -29.41139 -28.49088 -27.13382 -26.29877 -24.97078 -23.30581 -22.45301 -22.35487 -21.41059 -19.57867 -19.17146 -18.93276 -18.19968 -17.38904 -16.98971 -16.41495 -15.57460 -15.23469 -14.65753 -14.53825 -14.39181 -14.17883 -14.00398 -13.63169 -13.57856 -13.35179 -13.19007 -13.10492 -12.80613 -12.35966 -12.24060 -11.93025 -11.84181 -11.52896 -11.36466 -11.32318 -11.09745 -10.93013 -10.87678 -10.59156 -10.58285 -10.29385 -10.25829 -9.85604 -9.48013 -9.27990 -8.84694 -8.49489 -7.37274 -6.09433 -4.11288 -0.46726 0.43509 0.77727 1.03650 2.83949 3.22541 3.27850 3.34151 3.36986 3.74581 3.76658 4.00513 4.25790 4.35995 4.50730 4.74957 4.78174 4.93001 4.99862 5.05063 5.22425 5.25909 5.29941 5.33349 5.36079 5.44208 5.46106 5.59440 5.63449 5.72828 5.79660 5.93735 5.94060 6.06403 6.23957 6.41582 6.49700 6.71131 6.91448 7.14766 7.19109 7.24475 7.32763 7.71027 7.97804 8.08460 8.44129 8.95942 9.53448 11.01385 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.027115 B = 0.002607 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.392699 B =10736.219274 C =11084.981322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.017 3.983 3 C -0.107 4.107 4 C -0.104 4.104 5 C 0.351 3.649 6 N -0.489 5.489 7 C 0.061 3.939 8 C 0.069 3.931 9 N -0.538 5.538 10 C 0.195 3.805 11 C -0.510 4.510 12 H 0.063 0.937 13 C 0.056 3.944 14 N -0.898 5.898 15 Si 0.898 3.102 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.274 1.274 19 C 0.058 3.942 20 C 0.065 3.935 21 N -0.493 5.493 22 C 0.181 3.819 23 C -0.107 4.107 24 N 0.034 4.966 25 O -0.151 6.151 26 O -0.156 6.156 27 H 0.100 0.900 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.032 0.968 36 H 0.093 0.907 37 H 0.031 0.969 38 H -0.007 1.007 39 H 0.262 0.738 40 H 0.079 0.921 41 H 0.034 0.966 42 H 0.060 0.940 43 H 0.071 0.929 44 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.093 -12.751 -1.971 22.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.009 3.991 3 C -0.111 4.111 4 C -0.161 4.161 5 C 0.124 3.876 6 N -0.214 5.214 7 C -0.065 4.065 8 C -0.059 4.059 9 N -0.263 5.263 10 C 0.070 3.930 11 C -0.548 4.548 12 H 0.081 0.919 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.726 3.274 16 H -0.206 1.206 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.071 4.071 20 C -0.061 4.061 21 N -0.205 5.205 22 C 0.020 3.980 23 C -0.193 4.193 24 N 0.555 4.445 25 O -0.369 6.369 26 O -0.372 6.372 27 H 0.118 0.882 28 H 0.106 0.894 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.112 0.888 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.050 0.950 36 H 0.112 0.888 37 H 0.049 0.951 38 H 0.011 0.989 39 H 0.071 0.929 40 H 0.097 0.903 41 H 0.052 0.948 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -16.709 -11.878 -2.010 20.599 hybrid contribution -0.197 -0.326 0.642 0.747 sum -16.906 -12.204 -1.368 20.895 Atomic orbital electron populations 1.21082 0.87844 1.04398 1.04912 1.20030 0.98258 0.89570 0.91267 1.20550 0.92766 0.95958 1.01833 1.20723 0.99766 0.92377 1.03241 1.20418 0.90879 0.88347 0.87972 1.60611 1.29434 1.25629 1.05699 1.22393 0.94801 1.00136 0.89191 1.22004 0.94794 0.93105 0.96037 1.62293 1.23722 1.40644 0.99664 1.19708 0.91962 0.83191 0.98159 1.21137 1.17882 1.02177 1.13632 0.91893 1.24986 0.97514 0.95396 0.96640 1.69955 1.39048 1.06549 1.38167 0.86497 0.81597 0.77114 0.82200 1.20606 1.21294 1.19856 1.22071 0.95376 0.94139 0.95516 1.22276 0.94633 0.99620 0.89592 1.68317 1.39803 0.98023 1.14374 1.22516 0.88045 0.97818 0.89636 1.22076 0.94147 0.83913 1.19133 1.43373 1.00429 1.02272 0.98410 1.94533 1.10999 1.89911 1.41437 1.94572 1.70039 1.30482 1.42149 0.88174 0.89427 0.90302 0.90307 0.91040 0.88767 0.91003 0.92200 0.94964 0.88845 0.95083 0.98914 0.92858 0.90306 0.94806 0.92144 0.91072 0.80653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.88 8.11 36.01 0.29 -0.59 16 2 C 0.02 0.17 5.91 -104.36 -0.62 -0.45 16 3 C -0.11 -1.07 5.92 -104.27 -0.62 -1.69 16 4 C -0.10 -0.82 8.95 36.01 0.32 -0.49 16 5 C 0.35 4.29 5.32 -155.01 -0.82 3.47 16 6 N -0.49 -6.55 3.59 -173.05 -0.62 -7.18 16 7 C 0.06 0.90 5.44 -3.77 -0.02 0.88 16 8 C 0.07 1.25 5.43 -3.76 -0.02 1.23 16 9 N -0.54 -10.93 4.70 -235.90 -1.11 -12.04 16 10 C 0.19 4.85 4.72 -4.97 -0.02 4.82 16 11 C -0.51 -13.80 8.47 -34.44 -0.29 -14.10 16 12 H 0.06 1.69 7.13 -52.48 -0.37 1.31 16 13 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 14 N -0.90 -26.04 13.29 55.43 0.74 -25.30 16 15 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 19 C 0.06 0.97 5.61 -3.77 -0.02 0.95 16 20 C 0.07 0.92 5.43 -3.77 -0.02 0.90 16 21 N -0.49 -6.27 9.64 -12.44 -0.12 -6.39 16 22 C 0.18 1.99 10.80 -17.57 -0.19 1.80 16 23 C -0.11 -1.16 6.53 -79.80 -0.52 -1.68 16 24 N 0.03 0.40 4.21 34.04 0.14 0.54 16 25 O -0.15 -1.79 16.81 -29.46 -0.50 -2.28 16 26 O -0.16 -1.95 18.92 -29.46 -0.56 -2.50 16 27 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.09 0.44 6.62 -51.93 -0.34 0.10 16 29 H 0.08 0.60 6.94 -51.93 -0.36 0.24 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.42 6.90 -51.93 -0.36 0.06 16 32 H 0.09 0.87 7.38 -51.93 -0.38 0.49 16 33 H 0.07 0.94 8.13 -51.93 -0.42 0.52 16 34 H 0.06 0.97 7.97 -51.93 -0.41 0.55 16 35 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.09 1.82 6.79 -51.93 -0.35 1.47 16 37 H 0.03 0.83 8.03 -51.93 -0.42 0.41 16 38 H -0.01 -0.19 8.12 -51.93 -0.42 -0.61 16 39 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 41 H 0.03 0.57 8.14 -51.92 -0.42 0.14 16 42 H 0.06 0.94 7.95 -51.93 -0.41 0.52 16 43 H 0.07 0.88 8.13 -51.93 -0.42 0.45 16 44 H 0.18 1.59 7.98 -52.49 -0.42 1.17 16 LS Contribution 361.12 15.07 5.44 5.44 Total: -1.00 -29.77 361.12 -10.60 -40.37 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: -6.35 Total: -3.30 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -2.65 Total: -3.49 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: -0.97 Total: -50.36 kcal Atomic # 8 Polarization: -3.73 SS G_CDS: -1.05 Total: -4.79 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.77 -10.60 -40.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165055472.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.944 kcal (2) G-P(sol) polarization free energy of solvation -29.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds