Wall clock time and date at job start Tue Mar 31 2020 12:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38338 * 120.74915 * 2 1 4 4 C 1.50707 * 120.44939 * 0.02562 * 3 2 1 5 5 C 1.39089 * 119.09755 * 180.26164 * 3 2 1 6 6 N 1.39011 * 119.70450 * 179.72895 * 5 3 2 7 7 C 1.46952 * 111.00016 * 117.39394 * 6 5 3 8 8 C 1.53049 * 109.38258 * 183.17767 * 7 6 5 9 9 N 1.46963 * 109.36620 * 301.63196 * 8 7 6 10 10 C 1.46897 * 111.00180 * 183.16382 * 9 8 7 11 11 C 1.50706 * 109.46854 * 66.18289 * 10 9 8 12 12 H 1.08008 * 119.99686 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00271 * 180.02562 * 11 10 9 14 14 N 1.31519 * 119.99416 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00127 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46971 * 90.00160 * 15 13 11 17 17 H 1.48500 * 109.46846 * 209.99946 * 15 13 11 18 18 H 1.48491 * 109.47341 * 329.99778 * 15 13 11 19 19 C 1.46961 * 110.89557 * 59.28445 * 9 8 7 20 20 C 1.46955 * 110.99976 * 241.19613 * 6 5 3 21 21 N 1.32424 * 120.59160 * 359.45523 * 5 3 2 22 22 C 1.31946 * 121.62239 * 0.27763 * 21 5 3 23 23 C 1.38065 * 120.85270 * 359.97438 * 22 21 5 24 24 N 1.48003 * 120.33726 * 180.02562 * 23 22 21 25 25 O 1.21800 * 120.00316 * 144.36078 * 24 23 22 26 26 O 1.21802 * 119.99650 * 324.37245 * 24 23 22 27 27 H 1.09002 * 109.46821 * 265.21773 * 1 2 3 28 28 H 1.09004 * 109.46799 * 25.21372 * 1 2 3 29 29 H 1.08990 * 109.47262 * 145.21706 * 1 2 3 30 30 H 1.09002 * 109.47219 * 273.32983 * 4 3 2 31 31 H 1.08998 * 109.47142 * 33.33234 * 4 3 2 32 32 H 1.09001 * 109.46954 * 153.33232 * 4 3 2 33 33 H 1.08997 * 109.48897 * 303.15644 * 7 6 5 34 34 H 1.09004 * 109.48751 * 63.20118 * 7 6 5 35 35 H 1.08999 * 109.49247 * 61.57672 * 8 7 6 36 36 H 1.09001 * 109.49105 * 181.64453 * 8 7 6 37 37 H 1.08999 * 109.47242 * 186.17842 * 10 9 8 38 38 H 1.08999 * 109.47106 * 306.18509 * 10 9 8 39 39 H 0.97000 * 119.99766 * 180.02562 * 14 13 11 40 40 H 1.08995 * 109.48943 * 180.72040 * 19 9 8 41 41 H 1.09009 * 109.48616 * 60.66205 * 19 9 8 42 42 H 1.09005 * 109.49271 * 296.77503 * 20 6 5 43 43 H 1.08998 * 109.49090 * 56.82151 * 20 6 5 44 44 H 1.08000 * 119.57264 * 179.97438 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2144 1.1889 0.0000 4 6 1.4883 2.5095 0.0006 5 6 3.6047 1.1488 -0.0055 6 7 4.3280 2.3359 -0.0113 7 6 5.1460 2.4601 1.2031 8 6 5.8637 3.8119 1.1962 9 7 6.6970 3.9150 -0.0100 10 6 7.4613 5.1695 -0.0161 11 6 8.4642 5.1521 1.1087 12 1 8.5271 4.2950 1.7629 13 6 9.3007 6.2308 1.3032 14 7 9.2236 7.2746 0.5068 15 14 10.5432 6.2095 2.6978 16 1 11.8193 5.6234 2.2148 17 1 10.7828 7.5975 3.1684 18 1 10.0154 5.3910 3.8187 19 6 5.8789 3.7908 -1.2245 20 6 5.1616 2.4388 -1.2172 21 7 4.2455 -0.0100 0.0001 22 6 3.5971 -1.1591 0.0056 23 6 2.2168 -1.1933 0.0062 24 7 1.5011 -2.4887 0.0130 25 8 0.4564 -2.6042 0.6285 26 8 1.9569 -3.4395 -0.5968 27 1 -0.3633 -0.0857 1.0241 28 1 -0.3633 0.9298 -0.4378 29 1 -0.3633 -0.8439 -0.5862 30 1 1.2606 2.7994 -1.0252 31 1 0.5611 2.4141 0.5656 32 1 2.1182 3.2702 0.4618 33 1 4.5047 2.3934 2.0819 34 1 5.8829 1.6573 1.2289 35 1 5.1267 4.6149 1.1983 36 1 6.4937 3.8938 2.0819 37 1 7.9838 5.2719 -0.9672 38 1 6.7806 6.0103 0.1170 39 1 9.8123 8.0333 0.6434 40 1 6.5202 3.8576 -2.1033 41 1 5.1417 4.5934 -1.2500 42 1 5.8990 1.6360 -1.2192 43 1 4.5318 2.3561 -2.1029 44 1 4.1532 -2.0850 0.0097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165055472.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:45 Heat of formation + Delta-G solvation = 35.100295 kcal Electronic energy + Delta-G solvation = -27092.386748 eV Core-core repulsion = 23240.711358 eV Total energy + Delta-G solvation = -3851.675390 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.49885 -42.16429 -39.97680 -37.81081 -36.99080 -35.92627 -34.72912 -33.19243 -32.03638 -30.15805 -29.92638 -28.14909 -27.37329 -26.38341 -24.65005 -23.80472 -23.21209 -22.79112 -20.83352 -20.03682 -19.90266 -19.09610 -18.52466 -18.38322 -17.86109 -16.80115 -16.60755 -15.99048 -15.91144 -15.53869 -15.39067 -15.18137 -14.77659 -14.66745 -14.19667 -14.10789 -13.95427 -13.77060 -13.55237 -13.46198 -13.12091 -13.00632 -12.80185 -12.72510 -12.59760 -12.39990 -12.34586 -12.24460 -12.19992 -12.14645 -11.69361 -11.31283 -11.12967 -11.11476 -10.62415 -10.28264 -9.96095 -9.06189 -8.21613 -6.31419 -1.35861 -0.34577 -0.12958 0.16074 1.41081 1.42080 1.52830 1.98434 2.22907 2.39314 2.92975 3.00483 3.10805 3.20036 3.23003 3.43956 3.70081 3.91792 4.04753 4.07503 4.17734 4.20314 4.29150 4.39481 4.45484 4.51420 4.59395 4.68093 4.69562 4.77628 4.87572 4.91808 4.94615 4.98046 4.98751 5.13945 5.19317 5.24046 5.38779 5.53961 5.63114 5.86859 6.03359 6.27005 6.29520 6.39235 6.58259 6.84217 7.38440 8.89403 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.027115 B = 0.002607 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.392699 B =10736.219274 C =11084.981322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.024 3.976 3 C -0.097 4.097 4 C -0.103 4.103 5 C 0.331 3.669 6 N -0.482 5.482 7 C 0.075 3.925 8 C 0.073 3.927 9 N -0.548 5.548 10 C 0.211 3.789 11 C -0.523 4.523 12 H 0.062 0.938 13 C 0.004 3.996 14 N -0.933 5.933 15 Si 0.967 3.033 16 H -0.275 1.275 17 H -0.282 1.282 18 H -0.264 1.264 19 C 0.059 3.941 20 C 0.077 3.923 21 N -0.514 5.514 22 C 0.177 3.823 23 C -0.111 4.111 24 N 0.036 4.964 25 O -0.141 6.141 26 O -0.181 6.181 27 H 0.113 0.887 28 H 0.112 0.888 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.045 0.955 35 H 0.030 0.970 36 H 0.074 0.926 37 H 0.005 0.995 38 H -0.033 1.033 39 H 0.265 0.735 40 H 0.077 0.923 41 H 0.035 0.965 42 H 0.046 0.954 43 H 0.096 0.904 44 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.933 -13.540 -1.270 24.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.016 3.984 3 C -0.101 4.101 4 C -0.160 4.160 5 C 0.105 3.895 6 N -0.206 5.206 7 C -0.051 4.051 8 C -0.055 4.055 9 N -0.274 5.274 10 C 0.085 3.915 11 C -0.562 4.562 12 H 0.080 0.920 13 C -0.195 4.195 14 N -0.574 5.574 15 Si 0.791 3.209 16 H -0.201 1.201 17 H -0.208 1.208 18 H -0.188 1.188 19 C -0.070 4.070 20 C -0.050 4.050 21 N -0.227 5.227 22 C 0.016 3.984 23 C -0.196 4.196 24 N 0.556 4.444 25 O -0.363 6.363 26 O -0.391 6.391 27 H 0.131 0.869 28 H 0.130 0.870 29 H 0.092 0.908 30 H 0.110 0.890 31 H 0.115 0.885 32 H 0.099 0.901 33 H 0.111 0.889 34 H 0.063 0.937 35 H 0.048 0.952 36 H 0.092 0.908 37 H 0.023 0.977 38 H -0.016 1.016 39 H 0.073 0.927 40 H 0.095 0.905 41 H 0.053 0.947 42 H 0.065 0.935 43 H 0.114 0.886 44 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -18.541 -12.715 -1.341 22.522 hybrid contribution 0.264 -0.108 0.406 0.496 sum -18.277 -12.823 -0.935 22.346 Atomic orbital electron populations 1.21218 0.85690 1.05549 1.05787 1.20341 0.99661 0.88679 0.89734 1.20710 0.91770 0.97092 1.00574 1.20809 1.00296 0.90545 1.04352 1.20432 0.91577 0.87646 0.89869 1.60545 1.28559 1.26856 1.04645 1.22155 0.94811 0.97211 0.90934 1.21931 0.94217 0.95143 0.94217 1.62185 1.25399 1.37779 1.01991 1.19329 0.91550 0.84439 0.96203 1.21447 1.18404 1.02198 1.14120 0.91988 1.25870 0.99475 0.94952 0.99163 1.70076 1.40111 1.07259 1.39930 0.85421 0.78916 0.77353 0.79173 1.20114 1.20767 1.18795 1.22115 0.95109 0.95954 0.93799 1.22119 0.94691 0.97045 0.91122 1.68234 1.40644 0.98600 1.15209 1.22661 0.88407 0.97762 0.89567 1.22177 0.94210 0.83871 1.19364 1.43472 1.00354 1.02461 0.98143 1.94516 1.10984 1.89955 1.40871 1.94582 1.70426 1.31050 1.43071 0.86908 0.86964 0.90793 0.89008 0.88491 0.90105 0.88888 0.93659 0.95170 0.90809 0.97695 1.01564 0.92667 0.90500 0.94654 0.93532 0.88565 0.79526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.29 8.11 71.24 0.58 -0.72 16 2 C 0.02 0.40 5.91 -19.69 -0.12 0.28 16 3 C -0.10 -1.67 5.92 -19.63 -0.12 -1.79 16 4 C -0.10 -1.26 8.95 71.24 0.64 -0.63 16 5 C 0.33 7.51 5.32 133.04 0.71 8.22 16 6 N -0.48 -12.29 3.59 -701.40 -2.52 -14.81 16 7 C 0.08 2.18 5.44 86.31 0.47 2.65 16 8 C 0.07 2.68 5.43 86.31 0.47 3.15 16 9 N -0.55 -22.86 4.70 -900.25 -4.23 -27.09 16 10 C 0.21 10.94 4.72 85.56 0.40 11.34 16 11 C -0.52 -29.03 8.47 25.60 0.22 -28.81 16 12 H 0.06 3.38 7.13 -2.91 -0.02 3.36 16 13 C 0.00 0.20 5.46 84.65 0.46 0.66 16 14 N -0.93 -55.27 13.29 21.45 0.28 -54.99 16 15 Si 0.97 43.60 29.54 68.60 2.03 45.62 16 16 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 17 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 18 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 19 C 0.06 1.98 5.61 86.31 0.48 2.46 16 20 C 0.08 2.10 5.43 86.31 0.47 2.57 16 21 N -0.51 -12.48 9.64 -193.26 -1.86 -14.35 16 22 C 0.18 3.68 10.80 84.63 0.91 4.60 16 23 C -0.11 -2.18 6.53 36.48 0.24 -1.94 16 24 N 0.04 0.78 4.21 -46.23 -0.19 0.59 16 25 O -0.14 -3.05 16.81 18.89 0.32 -2.73 16 26 O -0.18 -4.35 18.92 18.88 0.36 -3.99 16 27 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.11 0.62 6.62 -2.38 -0.02 0.60 16 29 H 0.07 0.89 6.94 -2.39 -0.02 0.87 16 30 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.10 0.71 6.90 -2.39 -0.02 0.69 16 32 H 0.08 1.27 7.38 -2.39 -0.02 1.26 16 33 H 0.09 2.31 8.13 -2.39 -0.02 2.29 16 34 H 0.04 1.45 7.97 -2.38 -0.02 1.44 16 35 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.07 2.95 6.79 -2.39 -0.02 2.94 16 37 H 0.00 0.28 8.03 -2.39 -0.02 0.26 16 38 H -0.03 -1.87 8.12 -2.39 -0.02 -1.89 16 39 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 40 H 0.08 2.58 8.07 -2.39 -0.02 2.56 16 41 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 42 H 0.05 1.42 7.95 -2.38 -0.02 1.40 16 43 H 0.10 2.18 8.13 -2.39 -0.02 2.16 16 44 H 0.19 3.25 7.98 -2.91 -0.02 3.23 16 Total: -1.00 -65.31 361.12 1.01 -64.31 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: 1.01 Total: 5.39 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: 5.82 Total: 2.05 kcal Atomic # 7 Polarization: -102.12 SS G_CDS: -8.52 Total: -110.65 kcal Atomic # 8 Polarization: -7.40 SS G_CDS: 0.67 Total: -6.72 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Total: -65.31 1.01 -64.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165055472.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.408 kcal (2) G-P(sol) polarization free energy of solvation -65.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds