Wall clock time and date at job start Tue Mar 31 2020 13:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.32222 * 120.50772 * 2 1 4 4 C 1.31913 * 121.13841 * 180.26559 * 3 2 1 5 5 N 1.31753 * 122.19643 * 359.72742 * 4 3 2 6 6 C 1.32753 * 120.87098 * 359.97438 * 5 4 3 7 7 O 1.35274 * 120.61374 * 180.02562 * 6 5 4 8 8 C 1.39767 * 120.50838 * 179.73529 * 2 1 3 9 9 C 1.47530 * 120.98165 * 0.02748 * 8 2 1 10 10 O 1.21585 * 119.99959 * 269.71662 * 9 8 2 11 11 N 1.34784 * 120.00048 * 89.71617 * 9 8 2 12 12 C 1.46496 * 119.99897 * 185.65326 * 11 9 8 13 13 C 1.53001 * 109.47140 * 175.08324 * 12 11 9 14 14 C 1.52999 * 109.47032 * 178.81613 * 13 12 11 15 15 C 1.52999 * 115.55033 * 40.17471 * 14 13 12 16 16 N 1.46500 * 109.47165 * 65.19922 * 15 14 13 17 17 C 1.36941 * 119.99714 * 185.11852 * 16 15 14 18 18 H 1.08000 * 120.00175 * 4.91334 * 17 16 15 19 19 C 1.38809 * 119.99614 * 184.91359 * 17 16 15 20 20 N 1.31620 * 119.99891 * 183.49961 * 19 17 16 21 21 Si 1.86804 * 120.00350 * 3.49459 * 19 17 16 22 22 H 1.48496 * 109.46731 * 91.19304 * 21 19 17 23 23 H 1.48494 * 109.47032 * 211.19308 * 21 19 17 24 24 H 1.48503 * 109.46971 * 331.19390 * 21 19 17 25 25 C 1.53002 * 117.50057 * 254.46280 * 14 13 12 26 26 C 1.52999 * 60.00128 * 252.51210 * 25 14 13 27 27 H 1.08993 * 109.46753 * 270.26422 * 1 2 3 28 28 H 1.08995 * 109.46777 * 30.26226 * 1 2 3 29 29 H 1.09001 * 109.46844 * 150.25897 * 1 2 3 30 30 H 1.08001 * 118.90158 * 179.75326 * 4 3 2 31 31 H 0.96700 * 114.00066 * 269.97972 * 7 6 5 32 32 H 0.96996 * 119.99782 * 5.92491 * 11 9 8 33 33 H 1.08998 * 109.47542 * 295.08388 * 12 11 9 34 34 H 1.09008 * 109.47534 * 55.08570 * 12 11 9 35 35 H 1.08994 * 109.47263 * 298.82291 * 13 12 11 36 36 H 1.09007 * 109.46728 * 58.81954 * 13 12 11 37 37 H 1.09004 * 109.47167 * 185.20051 * 15 14 13 38 38 H 1.09002 * 109.47248 * 305.19636 * 15 14 13 39 39 H 0.96995 * 120.00061 * 5.11747 * 16 15 14 40 40 H 0.97003 * 120.00453 * 179.97438 * 20 19 17 41 41 H 1.09002 * 117.49966 * 0.02562 * 25 14 13 42 42 H 1.08997 * 117.49640 * 145.02366 * 25 14 13 43 43 H 1.08999 * 117.50182 * 252.51418 * 26 25 14 44 44 H 1.09003 * 117.49816 * 107.48847 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1783 1.1392 0.0000 4 6 3.4973 1.1537 -0.0052 5 7 4.2116 0.0466 -0.0054 6 6 3.6234 -1.1435 0.0003 7 8 4.3618 -2.2769 0.0006 8 6 2.2166 -1.2042 0.0056 9 6 1.5124 -2.5005 0.0109 10 8 1.2264 -3.0326 1.0661 11 7 1.1861 -3.0951 -1.1538 12 6 0.3796 -4.3180 -1.1513 13 6 0.0508 -4.7152 -2.5918 14 6 -0.7665 -6.0086 -2.5903 15 6 -1.8298 -6.1160 -1.4954 16 7 -2.8592 -5.0966 -1.7127 17 6 -3.8628 -4.9308 -0.7959 18 1 -3.8520 -5.4954 0.1247 19 6 -4.8940 -4.0370 -1.0498 20 7 -5.8214 -3.8263 -0.1399 21 14 -4.9656 -3.1329 -2.6830 22 1 -5.7758 -3.9183 -3.6483 23 1 -5.5882 -1.7996 -2.4837 24 1 -3.5897 -2.9622 -3.2150 25 6 -0.0539 -7.2951 -3.0124 26 6 -1.0800 -6.6477 -3.9446 27 1 -0.3632 0.0047 1.0276 28 1 -0.3633 0.8876 -0.5179 29 1 -0.3633 -0.8923 -0.5098 30 1 4.0088 2.1049 -0.0091 31 1 4.5728 -2.6092 -0.8827 32 1 1.4887 -2.7154 -1.9936 33 1 0.9390 -5.1212 -0.6716 34 1 -0.5458 -4.1419 -0.6027 35 1 -0.5266 -3.9210 -3.0649 36 1 0.9765 -4.8709 -3.1460 37 1 -2.2858 -7.1056 -1.5277 38 1 -1.3653 -5.9616 -0.5215 39 1 -2.8299 -4.5391 -2.5059 40 1 -6.5419 -3.2014 -0.3171 41 1 0.9973 -7.2201 -3.2908 42 1 -0.3425 -8.2183 -2.5100 43 1 -2.0436 -7.1450 -4.0555 44 1 -0.7039 -6.1467 -4.8367 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166782613.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:11 Heat of formation + Delta-G solvation = 11.592476 kcal Electronic energy + Delta-G solvation = -27010.566852 eV Core-core repulsion = 23157.872086 eV Total energy + Delta-G solvation = -3852.694766 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.71947 -39.53542 -38.42366 -38.14015 -34.94909 -34.52574 -34.09668 -32.38598 -31.16858 -30.19295 -28.86811 -26.34446 -25.59285 -23.42398 -23.13538 -22.52415 -21.86820 -21.02696 -19.30141 -19.04227 -18.41373 -17.92806 -17.29062 -16.77253 -16.19413 -15.54670 -15.24280 -15.09354 -14.63055 -14.55803 -14.48839 -13.83066 -13.67420 -13.57491 -13.21416 -13.10078 -12.91986 -12.67669 -12.43211 -12.34651 -12.07063 -11.64603 -11.60840 -11.49498 -11.20691 -10.95764 -10.79642 -10.70601 -10.26090 -10.09106 -9.90934 -9.82618 -9.70128 -9.63760 -9.51789 -9.11407 -8.89814 -7.22689 -5.77248 -3.12715 0.22479 0.51969 2.33529 2.80972 2.98543 3.20015 3.31296 3.37327 3.42459 3.61959 3.86817 3.87482 4.37106 4.56948 4.58667 4.76208 4.77865 4.87691 4.97826 4.99849 5.14752 5.32928 5.37324 5.42213 5.50019 5.57150 5.62201 5.63529 5.73413 5.81863 5.94521 6.02572 6.10598 6.20470 6.25497 6.29320 6.34809 6.43760 6.62895 6.68852 6.87802 7.29747 7.59993 8.00711 8.02323 8.41951 9.21713 9.93300 10.14258 11.41211 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011876 B = 0.003909 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.163631 B = 7161.336498 C = 8679.016000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.233 3.767 3 N -0.524 5.524 4 C 0.334 3.666 5 N -0.544 5.544 6 C 0.396 3.604 7 O -0.466 6.466 8 C -0.250 4.250 9 C 0.575 3.425 10 O -0.509 6.509 11 N -0.721 5.721 12 C 0.116 3.884 13 C -0.085 4.085 14 C -0.128 4.128 15 C 0.188 3.812 16 N -0.751 5.751 17 C -0.243 4.243 18 H 0.090 0.910 19 C 0.006 3.994 20 N -0.933 5.933 21 Si 0.885 3.115 22 H -0.285 1.285 23 H -0.292 1.292 24 H -0.280 1.280 25 C -0.171 4.171 26 C -0.170 4.170 27 H 0.100 0.900 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.207 0.793 31 H 0.410 0.590 32 H 0.396 0.604 33 H 0.068 0.932 34 H 0.096 0.904 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.025 0.975 38 H 0.038 0.962 39 H 0.362 0.638 40 H 0.259 0.741 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.471 4.897 -7.721 22.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.087 3.913 3 N -0.241 5.241 4 C 0.047 3.953 5 N -0.269 5.269 6 C 0.208 3.792 7 O -0.274 6.274 8 C -0.259 4.259 9 C 0.357 3.643 10 O -0.383 6.383 11 N -0.372 5.372 12 C -0.006 4.006 13 C -0.123 4.123 14 C -0.129 4.129 15 C 0.061 3.939 16 N -0.397 5.397 17 C -0.372 4.372 18 H 0.107 0.893 19 C -0.190 4.190 20 N -0.581 5.581 21 Si 0.716 3.284 22 H -0.212 1.212 23 H -0.218 1.218 24 H -0.206 1.206 25 C -0.209 4.209 26 C -0.207 4.207 27 H 0.118 0.882 28 H 0.112 0.888 29 H 0.106 0.894 30 H 0.223 0.777 31 H 0.270 0.730 32 H 0.229 0.771 33 H 0.087 0.913 34 H 0.114 0.886 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.043 0.957 38 H 0.056 0.944 39 H 0.195 0.805 40 H 0.069 0.931 41 H 0.108 0.892 42 H 0.113 0.887 43 H 0.116 0.884 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 20.527 5.280 -6.132 22.064 hybrid contribution -0.205 0.052 -1.994 2.005 sum 20.321 5.333 -8.125 22.526 Atomic orbital electron populations 1.20999 0.86337 1.05074 1.05214 1.21934 0.97994 0.85832 0.85497 1.68345 1.10108 1.29392 1.16209 1.25002 0.86317 0.96091 0.87898 1.68054 1.42606 0.98656 1.17579 1.19370 0.85478 0.85951 0.88424 1.84713 1.72583 1.35947 1.34130 1.21795 0.95032 0.97027 1.12028 1.17491 0.78933 0.83326 0.84513 1.90882 1.52670 1.63895 1.30833 1.46008 1.54797 1.28569 1.07832 1.21619 0.96161 0.85000 0.97826 1.21188 0.98724 0.96687 0.95686 1.21647 1.00398 0.92858 0.97967 1.20226 0.87167 0.92607 0.93855 1.42673 1.29595 1.41131 1.26287 1.19063 0.98986 1.20354 0.98844 0.89266 1.24671 0.97100 0.99729 0.97476 1.69706 1.15261 1.39353 1.33738 0.86549 0.77163 0.79520 0.85178 1.21196 1.21843 1.20613 1.23030 0.97278 0.96650 1.03896 1.22966 1.00534 1.03931 0.93267 0.88208 0.88800 0.89376 0.77715 0.73000 0.77061 0.91337 0.88609 0.90913 0.91887 0.95709 0.94384 0.80489 0.93086 0.89155 0.88703 0.88413 0.89323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.36 9.85 36.01 0.35 -1.01 16 2 C 0.23 2.78 6.86 -81.85 -0.56 2.22 16 3 N -0.52 -5.82 10.36 -10.52 -0.11 -5.93 16 4 C 0.33 3.15 12.27 -92.09 -1.13 2.02 16 5 N -0.54 -5.94 10.45 -14.32 -0.15 -6.09 16 6 C 0.40 4.52 7.85 -16.18 -0.13 4.39 16 7 O -0.47 -4.65 13.10 -17.52 -0.23 -4.88 16 8 C -0.25 -3.07 5.68 -104.57 -0.59 -3.67 16 9 C 0.57 8.13 5.51 -12.47 -0.07 8.06 16 10 O -0.51 -9.63 17.12 5.29 0.09 -9.54 16 11 N -0.72 -8.25 5.55 -61.35 -0.34 -8.59 16 12 C 0.12 1.57 4.80 -4.04 -0.02 1.56 16 13 C -0.09 -1.02 5.37 -26.73 -0.14 -1.16 16 14 C -0.13 -1.76 1.83 -154.51 -0.28 -2.05 16 15 C 0.19 3.46 5.32 -4.04 -0.02 3.44 16 16 N -0.75 -16.95 5.29 -59.91 -0.32 -17.26 16 17 C -0.24 -6.71 10.47 -15.06 -0.16 -6.87 16 18 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 19 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 20 N -0.93 -29.02 13.97 55.49 0.78 -28.24 16 21 Si 0.89 21.58 27.90 -169.99 -4.74 16.84 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.28 -6.25 6.30 56.52 0.36 -5.89 16 25 C -0.17 -1.94 9.87 -26.73 -0.26 -2.20 16 26 C -0.17 -2.13 9.97 -26.73 -0.27 -2.40 16 27 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.09 1.08 7.18 -51.93 -0.37 0.71 16 30 H 0.21 1.10 8.06 -52.49 -0.42 0.68 16 31 H 0.41 1.78 9.06 45.56 0.41 2.20 16 32 H 0.40 3.25 8.47 -40.82 -0.35 2.91 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.10 1.69 6.84 -51.92 -0.36 1.33 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.58 7.95 -51.92 -0.41 0.17 16 37 H 0.03 0.48 8.09 -51.93 -0.42 0.06 16 38 H 0.04 0.73 6.69 -51.93 -0.35 0.38 16 39 H 0.36 7.98 5.46 -40.82 -0.22 7.76 16 40 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 41 H 0.09 0.86 8.09 -51.93 -0.42 0.44 16 42 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 44 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 374.63 15.07 5.65 5.65 Total: -1.00 -36.12 374.63 -8.22 -44.34 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -5.47 Total: 11.29 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -3.38 Total: 2.41 kcal Atomic # 7 Polarization: -65.97 SS G_CDS: -0.14 Total: -66.11 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -0.14 Total: -14.42 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.74 Total: 16.84 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.12 -8.22 -44.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166782613.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.934 kcal (2) G-P(sol) polarization free energy of solvation -36.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds