Wall clock time and date at job start Tue Mar 31 2020 13:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.32222 * 120.50772 * 2 1 4 4 C 1.31913 * 121.13841 * 180.26559 * 3 2 1 5 5 N 1.31753 * 122.19643 * 359.72742 * 4 3 2 6 6 C 1.32753 * 120.87098 * 359.97438 * 5 4 3 7 7 O 1.35274 * 120.61374 * 180.02562 * 6 5 4 8 8 C 1.39767 * 120.50838 * 179.73529 * 2 1 3 9 9 C 1.47530 * 120.98165 * 0.02748 * 8 2 1 10 10 O 1.21585 * 119.99959 * 269.71662 * 9 8 2 11 11 N 1.34784 * 120.00048 * 89.71617 * 9 8 2 12 12 C 1.46496 * 119.99897 * 185.65326 * 11 9 8 13 13 C 1.53001 * 109.47140 * 175.08324 * 12 11 9 14 14 C 1.52999 * 109.47032 * 178.81613 * 13 12 11 15 15 C 1.52999 * 115.55033 * 40.17471 * 14 13 12 16 16 N 1.46500 * 109.47165 * 65.19922 * 15 14 13 17 17 C 1.36941 * 119.99714 * 185.11852 * 16 15 14 18 18 H 1.08000 * 120.00175 * 4.91334 * 17 16 15 19 19 C 1.38809 * 119.99614 * 184.91359 * 17 16 15 20 20 N 1.31620 * 119.99891 * 183.49961 * 19 17 16 21 21 Si 1.86804 * 120.00350 * 3.49459 * 19 17 16 22 22 H 1.48496 * 109.46731 * 91.19304 * 21 19 17 23 23 H 1.48494 * 109.47032 * 211.19308 * 21 19 17 24 24 H 1.48503 * 109.46971 * 331.19390 * 21 19 17 25 25 C 1.53002 * 117.50057 * 254.46280 * 14 13 12 26 26 C 1.52999 * 60.00128 * 252.51210 * 25 14 13 27 27 H 1.08993 * 109.46753 * 270.26422 * 1 2 3 28 28 H 1.08995 * 109.46777 * 30.26226 * 1 2 3 29 29 H 1.09001 * 109.46844 * 150.25897 * 1 2 3 30 30 H 1.08001 * 118.90158 * 179.75326 * 4 3 2 31 31 H 0.96700 * 114.00066 * 269.97972 * 7 6 5 32 32 H 0.96996 * 119.99782 * 5.92491 * 11 9 8 33 33 H 1.08998 * 109.47542 * 295.08388 * 12 11 9 34 34 H 1.09008 * 109.47534 * 55.08570 * 12 11 9 35 35 H 1.08994 * 109.47263 * 298.82291 * 13 12 11 36 36 H 1.09007 * 109.46728 * 58.81954 * 13 12 11 37 37 H 1.09004 * 109.47167 * 185.20051 * 15 14 13 38 38 H 1.09002 * 109.47248 * 305.19636 * 15 14 13 39 39 H 0.96995 * 120.00061 * 5.11747 * 16 15 14 40 40 H 0.97003 * 120.00453 * 179.97438 * 20 19 17 41 41 H 1.09002 * 117.49966 * 0.02562 * 25 14 13 42 42 H 1.08997 * 117.49640 * 145.02366 * 25 14 13 43 43 H 1.08999 * 117.50182 * 252.51418 * 26 25 14 44 44 H 1.09003 * 117.49816 * 107.48847 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1783 1.1392 0.0000 4 6 3.4973 1.1537 -0.0052 5 7 4.2116 0.0466 -0.0054 6 6 3.6234 -1.1435 0.0003 7 8 4.3618 -2.2769 0.0006 8 6 2.2166 -1.2042 0.0056 9 6 1.5124 -2.5005 0.0109 10 8 1.2264 -3.0326 1.0661 11 7 1.1861 -3.0951 -1.1538 12 6 0.3796 -4.3180 -1.1513 13 6 0.0508 -4.7152 -2.5918 14 6 -0.7665 -6.0086 -2.5903 15 6 -1.8298 -6.1160 -1.4954 16 7 -2.8592 -5.0966 -1.7127 17 6 -3.8628 -4.9308 -0.7959 18 1 -3.8520 -5.4954 0.1247 19 6 -4.8940 -4.0370 -1.0498 20 7 -5.8214 -3.8263 -0.1399 21 14 -4.9656 -3.1329 -2.6830 22 1 -5.7758 -3.9183 -3.6483 23 1 -5.5882 -1.7996 -2.4837 24 1 -3.5897 -2.9622 -3.2150 25 6 -0.0539 -7.2951 -3.0124 26 6 -1.0800 -6.6477 -3.9446 27 1 -0.3632 0.0047 1.0276 28 1 -0.3633 0.8876 -0.5179 29 1 -0.3633 -0.8923 -0.5098 30 1 4.0088 2.1049 -0.0091 31 1 4.5728 -2.6092 -0.8827 32 1 1.4887 -2.7154 -1.9936 33 1 0.9390 -5.1212 -0.6716 34 1 -0.5458 -4.1419 -0.6027 35 1 -0.5266 -3.9210 -3.0649 36 1 0.9765 -4.8709 -3.1460 37 1 -2.2858 -7.1056 -1.5277 38 1 -1.3653 -5.9616 -0.5215 39 1 -2.8299 -4.5391 -2.5059 40 1 -6.5419 -3.2014 -0.3171 41 1 0.9973 -7.2201 -3.2908 42 1 -0.3425 -8.2183 -2.5100 43 1 -2.0436 -7.1450 -4.0555 44 1 -0.7039 -6.1467 -4.8367 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166782613.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:10 Heat of formation + Delta-G solvation = -18.713108 kcal Electronic energy + Delta-G solvation = -27011.881000 eV Core-core repulsion = 23157.872086 eV Total energy + Delta-G solvation = -3854.008914 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.58352 -40.63172 -39.55968 -38.93231 -36.15657 -35.90543 -35.38118 -33.29798 -33.18581 -31.24253 -29.77618 -28.04937 -26.50541 -24.42828 -24.23528 -23.98967 -23.04686 -22.11957 -20.47560 -20.08647 -19.44667 -19.24258 -18.63613 -17.66193 -17.19440 -16.62103 -16.59637 -16.21755 -16.11521 -15.76092 -15.38126 -15.19254 -15.00008 -14.68420 -14.46035 -14.30330 -14.01491 -13.98767 -13.78771 -13.42594 -13.20521 -13.12480 -12.85970 -12.59149 -12.52744 -12.22099 -12.17424 -11.90255 -11.81262 -11.54058 -11.24135 -11.06227 -10.92313 -10.74109 -10.58308 -10.56850 -10.22272 -9.26000 -8.01030 -5.34305 -0.59797 -0.33274 1.24434 1.35326 1.42386 1.49199 1.89663 2.13264 2.37409 2.49346 2.82166 2.85550 3.07072 3.29853 3.45697 3.71498 3.72576 3.76165 3.94256 4.03185 4.07461 4.12828 4.17259 4.41003 4.42962 4.46422 4.55541 4.62603 4.85277 4.87398 4.94805 4.97069 5.10168 5.10870 5.14557 5.20630 5.28803 5.36443 5.37504 5.60625 5.77392 6.22752 6.29967 6.34631 6.79734 7.00484 7.10647 7.86001 8.08730 9.21056 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011876 B = 0.003909 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.163631 B = 7161.336498 C = 8679.016000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.230 3.770 3 N -0.533 5.533 4 C 0.341 3.659 5 N -0.552 5.552 6 C 0.403 3.597 7 O -0.476 6.476 8 C -0.266 4.266 9 C 0.579 3.421 10 O -0.568 6.568 11 N -0.699 5.699 12 C 0.124 3.876 13 C -0.073 4.073 14 C -0.148 4.148 15 C 0.187 3.813 16 N -0.747 5.747 17 C -0.234 4.234 18 H 0.047 0.953 19 C -0.063 4.063 20 N -0.986 5.986 21 Si 0.959 3.041 22 H -0.281 1.281 23 H -0.296 1.296 24 H -0.244 1.244 25 C -0.148 4.148 26 C -0.166 4.166 27 H 0.090 0.910 28 H 0.110 0.890 29 H 0.075 0.925 30 H 0.247 0.753 31 H 0.433 0.567 32 H 0.416 0.584 33 H 0.065 0.935 34 H 0.047 0.953 35 H 0.069 0.931 36 H 0.106 0.894 37 H 0.015 0.985 38 H 0.022 0.978 39 H 0.369 0.631 40 H 0.257 0.743 41 H 0.122 0.878 42 H 0.091 0.909 43 H 0.081 0.919 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.457 5.885 -11.226 26.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.084 3.916 3 N -0.250 5.250 4 C 0.055 3.945 5 N -0.277 5.277 6 C 0.215 3.785 7 O -0.288 6.288 8 C -0.275 4.275 9 C 0.363 3.637 10 O -0.446 6.446 11 N -0.351 5.351 12 C 0.000 4.000 13 C -0.111 4.111 14 C -0.149 4.149 15 C 0.061 3.939 16 N -0.393 5.393 17 C -0.365 4.365 18 H 0.065 0.935 19 C -0.254 4.254 20 N -0.637 5.637 21 Si 0.786 3.214 22 H -0.207 1.207 23 H -0.223 1.223 24 H -0.168 1.168 25 C -0.185 4.185 26 C -0.203 4.203 27 H 0.108 0.892 28 H 0.129 0.871 29 H 0.094 0.906 30 H 0.262 0.738 31 H 0.297 0.703 32 H 0.253 0.747 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.124 0.876 37 H 0.033 0.967 38 H 0.040 0.960 39 H 0.203 0.797 40 H 0.066 0.934 41 H 0.140 0.860 42 H 0.109 0.891 43 H 0.099 0.901 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 23.583 6.244 -9.724 26.262 hybrid contribution -1.073 -0.341 -0.798 1.380 sum 22.510 5.904 -10.521 25.539 Atomic orbital electron populations 1.20971 0.86635 1.05240 1.04703 1.21951 0.98046 0.86131 0.85428 1.68418 1.10950 1.28716 1.16885 1.25851 0.85862 0.97154 0.85606 1.68198 1.42572 0.98719 1.18221 1.19427 0.85126 0.86569 0.87383 1.84663 1.72209 1.35608 1.36307 1.21619 0.95534 0.95983 1.14351 1.17779 0.78122 0.83652 0.84134 1.90852 1.55207 1.65586 1.32944 1.45792 1.53456 1.27662 1.08179 1.21379 0.94229 0.85514 0.98831 1.21144 1.00195 0.95402 0.94333 1.21467 1.00428 0.95511 0.97467 1.20271 0.87450 0.90693 0.95491 1.42567 1.29202 1.42196 1.25302 1.18999 1.00166 1.19100 0.98276 0.93515 1.25541 0.96780 1.01274 1.01846 1.69912 1.16439 1.40791 1.36523 0.85358 0.78887 0.77397 0.79805 1.20748 1.22312 1.16848 1.23146 0.98666 0.94788 1.01891 1.23040 1.00461 1.03491 0.93266 0.89161 0.87121 0.90632 0.73765 0.70265 0.74686 0.91658 0.93431 0.91267 0.87594 0.96742 0.96003 0.79743 0.93393 0.85968 0.89072 0.90063 0.86692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.71 9.85 71.24 0.70 -2.01 16 2 C 0.23 5.30 6.86 42.87 0.29 5.60 16 3 N -0.53 -10.85 10.36 -187.20 -1.94 -12.78 16 4 C 0.34 5.52 12.27 180.86 2.22 7.74 16 5 N -0.55 -10.75 10.45 -312.04 -3.26 -14.01 16 6 C 0.40 8.55 7.85 85.18 0.67 9.22 16 7 O -0.48 -8.66 13.10 -85.59 -1.12 -9.78 16 8 C -0.27 -6.36 5.68 -19.83 -0.11 -6.47 16 9 C 0.58 16.48 5.51 86.69 0.48 16.95 16 10 O -0.57 -22.49 17.12 -3.98 -0.07 -22.55 16 11 N -0.70 -15.26 5.55 -466.27 -2.59 -17.85 16 12 C 0.12 3.29 4.80 86.38 0.41 3.70 16 13 C -0.07 -1.52 5.37 30.59 0.16 -1.36 16 14 C -0.15 -3.76 1.83 -52.18 -0.10 -3.85 16 15 C 0.19 7.00 5.32 86.38 0.46 7.46 16 16 N -0.75 -34.09 5.29 -343.45 -1.82 -35.90 16 17 C -0.23 -13.53 10.47 84.03 0.88 -12.65 16 18 H 0.05 3.03 8.06 -2.91 -0.02 3.00 16 19 C -0.06 -3.73 5.50 84.86 0.47 -3.27 16 20 N -0.99 -63.96 13.97 21.65 0.30 -63.65 16 21 Si 0.96 44.70 27.90 68.60 1.91 46.61 16 22 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 23 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 24 H -0.24 -9.82 6.30 99.48 0.63 -9.19 16 25 C -0.15 -2.81 9.87 30.59 0.30 -2.51 16 26 C -0.17 -3.57 9.97 30.60 0.31 -3.27 16 27 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.07 1.89 7.18 -2.39 -0.02 1.87 16 30 H 0.25 1.69 8.06 -2.91 -0.02 1.67 16 31 H 0.43 2.69 9.06 -74.06 -0.67 2.02 16 32 H 0.42 5.75 8.47 -92.71 -0.79 4.96 16 33 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.05 1.75 6.84 -2.38 -0.02 1.74 16 35 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.11 1.36 7.95 -2.38 -0.02 1.34 16 37 H 0.01 0.57 8.09 -2.39 -0.02 0.55 16 38 H 0.02 0.89 6.69 -2.39 -0.02 0.87 16 39 H 0.37 15.75 5.46 -92.71 -0.51 15.24 16 40 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 41 H 0.12 1.63 8.09 -2.39 -0.02 1.61 16 42 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -83.70 374.63 -2.41 -86.11 By element: Atomic # 1 Polarization: 29.50 SS G_CDS: -0.98 Total: 28.52 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: 7.14 Total: 15.30 kcal Atomic # 7 Polarization: -134.90 SS G_CDS: -9.30 Total: -144.20 kcal Atomic # 8 Polarization: -31.15 SS G_CDS: -1.19 Total: -32.34 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.91 Total: 46.61 kcal Total: -83.70 -2.41 -86.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166782613.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.396 kcal (2) G-P(sol) polarization free energy of solvation -83.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds