Wall clock time and date at job start Tue Mar 31 2020 12:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34231 * 116.99286 * 2 1 4 4 O 1.20818 * 120.00305 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99332 * 180.02562 * 3 2 1 6 6 H 1.08997 * 109.47262 * 59.99984 * 5 3 2 7 7 N 1.46506 * 109.46862 * 180.02562 * 5 3 2 8 8 C 1.38367 * 120.00055 * 274.99966 * 7 5 3 9 9 C 1.39714 * 119.42802 * 359.97438 * 8 7 5 10 10 C 1.36560 * 119.49263 * 179.97438 * 9 8 7 11 11 C 1.41323 * 118.40810 * 0.02562 * 10 9 8 12 12 C 1.41202 * 120.57079 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00334 * 203.64455 * 12 11 10 14 14 C 1.39863 * 119.99930 * 23.64777 * 12 11 10 15 15 N 1.30901 * 120.00381 * 17.64058 * 14 12 11 16 16 Si 1.86805 * 120.00171 * 197.64373 * 14 12 11 17 17 H 1.48500 * 109.47047 * 89.99656 * 16 14 12 18 18 H 1.48495 * 109.47367 * 210.00127 * 16 14 12 19 19 H 1.48503 * 109.46827 * 329.99825 * 16 14 12 20 20 C 1.40761 * 118.86155 * 359.97438 * 11 10 9 21 21 N 1.31489 * 120.36269 * 359.72481 * 20 11 10 22 22 C 1.53001 * 109.47142 * 299.99607 * 5 3 2 23 23 C 1.53182 * 109.54785 * 305.44753 * 22 5 3 24 24 C 1.53087 * 109.16391 * 176.84489 * 23 22 5 25 25 O 1.42905 * 109.41602 * 302.39069 * 24 23 22 26 26 C 1.42909 * 114.09751 * 61.16118 * 25 24 23 27 27 C 1.53092 * 109.41055 * 298.84084 * 26 25 24 28 28 H 1.09003 * 109.47155 * 60.00075 * 1 2 3 29 29 H 1.09004 * 109.46819 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47167 * 299.99892 * 1 2 3 31 31 H 0.97000 * 119.99722 * 94.99650 * 7 5 3 32 32 H 1.08000 * 120.25079 * 359.97438 * 9 8 7 33 33 H 1.07998 * 120.79956 * 180.02562 * 10 9 8 34 34 H 0.97001 * 120.00594 * 180.02562 * 15 14 12 35 35 H 1.07997 * 119.81676 * 180.02562 * 20 11 10 36 36 H 1.09001 * 109.61543 * 185.22483 * 22 5 3 37 37 H 1.08997 * 109.51848 * 296.75354 * 23 22 5 38 38 H 1.09004 * 109.51713 * 56.93655 * 23 22 5 39 39 H 1.09001 * 109.48205 * 182.41014 * 24 23 22 40 40 H 1.08999 * 109.48193 * 62.37681 * 24 23 22 41 41 H 1.09000 * 109.47921 * 178.85796 * 26 25 24 42 42 H 1.08998 * 109.47961 * 58.81799 * 26 25 24 43 43 H 1.08996 * 109.52618 * 297.69859 * 27 26 25 44 44 H 1.09001 * 109.52104 * 177.51498 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9557 0.7811 -0.8908 7 7 3.9816 2.6799 0.0002 8 6 4.0771 3.3738 -1.1932 9 6 3.7751 2.7227 -2.3919 10 6 3.8684 3.4063 -3.5703 11 6 4.2715 4.7603 -3.5320 12 6 4.3837 5.5102 -4.7232 13 1 5.0287 6.3758 -4.7577 14 6 3.6596 5.1320 -5.8584 15 7 2.6372 4.3227 -5.7431 16 14 4.1515 5.7816 -7.5394 17 1 5.1316 4.8551 -8.1608 18 1 2.9478 5.8811 -8.4033 19 1 4.7662 7.1252 -7.3903 20 6 4.5593 5.3486 -2.2860 21 7 4.4482 4.6481 -1.1788 22 6 4.1138 0.5812 1.2483 23 6 3.4634 1.1851 2.4968 24 6 3.9576 0.4325 3.7349 25 8 3.6496 -0.9565 3.6009 26 6 4.2691 -1.5857 2.4772 27 6 3.7873 -0.9142 1.1885 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 4.1896 3.1237 0.8372 32 1 3.4703 1.6866 -2.3865 33 1 3.6396 2.9239 -4.5091 34 1 2.1352 4.0601 -6.5305 35 1 4.8683 6.3823 -2.2388 36 1 5.1942 0.7169 1.2983 37 1 3.7364 2.2373 2.5770 38 1 2.3797 1.0936 2.4233 39 1 3.4653 0.8299 4.6225 40 1 5.0361 0.5582 3.8303 41 1 4.0011 -2.6421 2.4587 42 1 5.3516 -1.4864 2.5561 43 1 2.7102 -1.0481 1.0886 44 1 4.2920 -1.3633 0.3331 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167383579.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:39 Heat of formation + Delta-G solvation = -97.021061 kcal Electronic energy + Delta-G solvation = -27673.936212 eV Core-core repulsion = 23784.238859 eV Total energy + Delta-G solvation = -3889.697353 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.81206 -39.18292 -38.52109 -36.55038 -35.71130 -34.13168 -32.76772 -31.28856 -30.65382 -29.40236 -28.33760 -26.89561 -24.70050 -23.91043 -23.60706 -21.91349 -21.48256 -20.59801 -19.75176 -17.40088 -17.28719 -17.06227 -16.73770 -16.17213 -16.05786 -15.92140 -15.29329 -14.98475 -14.88248 -14.41010 -13.96055 -13.76571 -13.61291 -13.33130 -13.17534 -12.79547 -12.58208 -12.46270 -12.15273 -11.91857 -11.77575 -11.58545 -11.48905 -11.26345 -11.21656 -11.10638 -10.75407 -10.61040 -10.60249 -10.36731 -10.28261 -9.81871 -9.70279 -9.47506 -8.87087 -8.27368 -8.05915 -6.92664 -6.67249 -4.22736 2.48331 2.63320 2.85643 2.96879 3.07991 3.11356 3.30154 3.70628 3.85607 3.94575 4.44861 4.49003 4.67155 4.71091 4.85574 4.95172 5.04564 5.17048 5.19728 5.26421 5.32416 5.37632 5.48620 5.51590 5.55580 5.59642 5.71017 5.76265 5.88247 5.95286 6.04503 6.26304 6.38132 6.53270 6.58835 6.82891 7.01581 7.14327 7.28025 7.32939 7.64658 7.87839 8.01872 8.18047 8.34686 8.57787 8.81310 8.85842 9.66729 10.20452 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021859 B = 0.003182 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.636085 B = 8797.308801 C = 9349.333389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.361 6.361 3 C 0.434 3.566 4 O -0.484 6.484 5 C 0.188 3.812 6 H 0.113 0.887 7 N -0.714 5.714 8 C 0.276 3.724 9 C -0.199 4.199 10 C -0.095 4.095 11 C 0.034 3.966 12 C -0.456 4.456 13 H 0.079 0.921 14 C 0.073 3.927 15 N -0.802 5.802 16 Si 0.909 3.091 17 H -0.269 1.269 18 H -0.279 1.279 19 H -0.262 1.262 20 C 0.011 3.989 21 N -0.514 5.514 22 C -0.088 4.088 23 C -0.156 4.156 24 C 0.065 3.935 25 O -0.384 6.384 26 C 0.064 3.936 27 C -0.163 4.163 28 H 0.061 0.939 29 H 0.096 0.904 30 H 0.058 0.942 31 H 0.395 0.605 32 H 0.091 0.909 33 H 0.128 0.872 34 H 0.280 0.720 35 H 0.129 0.871 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.093 0.907 40 H 0.052 0.948 41 H 0.094 0.906 42 H 0.049 0.951 43 H 0.099 0.901 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.773 -12.897 11.801 17.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.278 6.278 3 C 0.273 3.727 4 O -0.368 6.368 5 C 0.077 3.923 6 H 0.131 0.869 7 N -0.353 5.353 8 C 0.044 3.956 9 C -0.222 4.222 10 C -0.121 4.121 11 C 0.029 3.971 12 C -0.487 4.487 13 H 0.097 0.903 14 C -0.143 4.143 15 N -0.429 5.429 16 Si 0.734 3.266 17 H -0.194 1.194 18 H -0.204 1.204 19 H -0.186 1.186 20 C -0.147 4.147 21 N -0.228 5.228 22 C -0.107 4.107 23 C -0.194 4.194 24 C -0.012 4.012 25 O -0.303 6.303 26 C -0.013 4.013 27 C -0.200 4.200 28 H 0.080 0.920 29 H 0.115 0.885 30 H 0.076 0.924 31 H 0.230 0.770 32 H 0.109 0.891 33 H 0.146 0.854 34 H 0.090 0.910 35 H 0.146 0.854 36 H 0.113 0.887 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.111 0.889 40 H 0.071 0.929 41 H 0.112 0.888 42 H 0.068 0.932 43 H 0.117 0.883 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.364 -12.482 12.449 17.633 hybrid contribution -0.333 0.368 -1.704 1.775 sum 0.030 -12.113 10.745 16.192 Atomic orbital electron populations 1.23196 0.77542 1.03104 1.02394 1.86562 1.22643 1.34082 1.84524 1.25220 0.93335 0.81446 0.72735 1.90695 1.66558 1.36295 1.43227 1.20258 0.85849 0.85503 1.00723 0.86925 1.43313 1.76654 1.08589 1.06720 1.17591 1.03583 0.89665 0.84727 1.20744 1.09244 0.99061 0.93182 1.21280 1.00156 0.94034 0.96651 1.18372 0.92944 0.92276 0.93504 1.19357 1.23371 1.11545 0.94386 0.90256 1.25880 0.93132 0.94064 1.01242 1.69830 1.13038 1.28303 1.31706 0.86291 0.78904 0.80254 0.81132 1.19382 1.20443 1.18613 1.22190 1.07971 0.97733 0.86837 1.66458 1.17656 1.05586 1.33105 1.21404 1.01311 0.95304 0.92716 1.22323 1.01457 1.00606 0.95010 1.22534 0.99643 0.81443 0.97576 1.87926 1.72589 1.22560 1.47239 1.22564 0.96453 0.97074 0.85196 1.22475 1.05012 0.93876 0.98680 0.92025 0.88510 0.92357 0.76981 0.89138 0.85436 0.90958 0.85400 0.88746 0.90265 0.91156 0.88861 0.92924 0.88769 0.93250 0.88272 0.90211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 101.05 1.07 1.44 16 2 O -0.36 -4.98 7.67 -39.26 -0.30 -5.28 16 3 C 0.43 7.20 5.52 36.01 0.20 7.40 16 4 O -0.48 -10.05 16.10 -18.74 -0.30 -10.36 16 5 C 0.19 2.80 1.99 -69.08 -0.14 2.66 16 6 H 0.11 1.66 6.41 -51.93 -0.33 1.33 16 7 N -0.71 -13.00 4.68 -54.99 -0.26 -13.26 16 8 C 0.28 6.35 7.52 -155.13 -1.17 5.18 16 9 C -0.20 -4.70 9.07 -39.64 -0.36 -5.06 16 10 C -0.09 -2.46 8.75 -39.02 -0.34 -2.80 16 11 C 0.03 0.91 5.59 -106.65 -0.60 0.31 16 12 C -0.46 -12.01 9.07 -37.85 -0.34 -12.35 16 13 H 0.08 1.99 7.90 -52.49 -0.41 1.58 16 14 C 0.07 1.84 5.17 -17.34 -0.09 1.75 16 15 N -0.80 -20.86 10.92 55.54 0.61 -20.25 16 16 Si 0.91 18.65 29.59 -169.99 -5.03 13.62 16 17 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 18 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 19 H -0.26 -5.31 7.11 56.52 0.40 -4.90 16 20 C 0.01 0.28 10.97 -16.75 -0.18 0.10 16 21 N -0.51 -12.72 10.37 -11.79 -0.12 -12.84 16 22 C -0.09 -0.98 2.21 -90.43 -0.20 -1.18 16 23 C -0.16 -1.72 4.99 -26.59 -0.13 -1.85 16 24 C 0.06 0.61 6.84 37.20 0.25 0.87 16 25 O -0.38 -4.15 10.77 -35.23 -0.38 -4.53 16 26 C 0.06 0.55 6.84 37.20 0.25 0.81 16 27 C -0.16 -1.56 5.15 -26.59 -0.14 -1.69 16 28 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 29 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 31 H 0.39 6.72 7.37 -40.82 -0.30 6.42 16 32 H 0.09 1.92 6.10 -52.49 -0.32 1.60 16 33 H 0.13 3.38 6.19 -52.49 -0.32 3.06 16 34 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 35 H 0.13 3.02 8.06 -52.49 -0.42 2.60 16 36 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.08 0.88 6.90 -51.93 -0.36 0.52 16 38 H 0.07 0.90 6.96 -51.93 -0.36 0.54 16 39 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.10 1.07 5.30 -51.93 -0.28 0.80 16 44 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 354.40 15.07 5.34 5.34 Total: -1.00 -31.68 354.40 -8.41 -40.09 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -6.05 Total: 11.90 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -1.91 Total: -4.43 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: 0.23 Total: -46.35 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.98 Total: -20.17 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.68 -8.41 -40.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167383579.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.934 kcal (2) G-P(sol) polarization free energy of solvation -31.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds