Wall clock time and date at job start Tue Mar 31 2020 12:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34231 * 116.99286 * 2 1 4 4 O 1.20818 * 120.00305 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99332 * 180.02562 * 3 2 1 6 6 H 1.08997 * 109.47262 * 59.99984 * 5 3 2 7 7 N 1.46506 * 109.46862 * 180.02562 * 5 3 2 8 8 C 1.38367 * 120.00055 * 274.99966 * 7 5 3 9 9 C 1.39714 * 119.42802 * 359.97438 * 8 7 5 10 10 C 1.36560 * 119.49263 * 179.97438 * 9 8 7 11 11 C 1.41323 * 118.40810 * 0.02562 * 10 9 8 12 12 C 1.41202 * 120.57079 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00334 * 203.64455 * 12 11 10 14 14 C 1.39863 * 119.99930 * 23.64777 * 12 11 10 15 15 N 1.30901 * 120.00381 * 17.64058 * 14 12 11 16 16 Si 1.86805 * 120.00171 * 197.64373 * 14 12 11 17 17 H 1.48500 * 109.47047 * 89.99656 * 16 14 12 18 18 H 1.48495 * 109.47367 * 210.00127 * 16 14 12 19 19 H 1.48503 * 109.46827 * 329.99825 * 16 14 12 20 20 C 1.40761 * 118.86155 * 359.97438 * 11 10 9 21 21 N 1.31489 * 120.36269 * 359.72481 * 20 11 10 22 22 C 1.53001 * 109.47142 * 299.99607 * 5 3 2 23 23 C 1.53182 * 109.54785 * 305.44753 * 22 5 3 24 24 C 1.53087 * 109.16391 * 176.84489 * 23 22 5 25 25 O 1.42905 * 109.41602 * 302.39069 * 24 23 22 26 26 C 1.42909 * 114.09751 * 61.16118 * 25 24 23 27 27 C 1.53092 * 109.41055 * 298.84084 * 26 25 24 28 28 H 1.09003 * 109.47155 * 60.00075 * 1 2 3 29 29 H 1.09004 * 109.46819 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47167 * 299.99892 * 1 2 3 31 31 H 0.97000 * 119.99722 * 94.99650 * 7 5 3 32 32 H 1.08000 * 120.25079 * 359.97438 * 9 8 7 33 33 H 1.07998 * 120.79956 * 180.02562 * 10 9 8 34 34 H 0.97001 * 120.00594 * 180.02562 * 15 14 12 35 35 H 1.07997 * 119.81676 * 180.02562 * 20 11 10 36 36 H 1.09001 * 109.61543 * 185.22483 * 22 5 3 37 37 H 1.08997 * 109.51848 * 296.75354 * 23 22 5 38 38 H 1.09004 * 109.51713 * 56.93655 * 23 22 5 39 39 H 1.09001 * 109.48205 * 182.41014 * 24 23 22 40 40 H 1.08999 * 109.48193 * 62.37681 * 24 23 22 41 41 H 1.09000 * 109.47921 * 178.85796 * 26 25 24 42 42 H 1.08998 * 109.47961 * 58.81799 * 26 25 24 43 43 H 1.08996 * 109.52618 * 297.69859 * 27 26 25 44 44 H 1.09001 * 109.52104 * 177.51498 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9557 0.7811 -0.8908 7 7 3.9816 2.6799 0.0002 8 6 4.0771 3.3738 -1.1932 9 6 3.7751 2.7227 -2.3919 10 6 3.8684 3.4063 -3.5703 11 6 4.2715 4.7603 -3.5320 12 6 4.3837 5.5102 -4.7232 13 1 5.0287 6.3758 -4.7577 14 6 3.6596 5.1320 -5.8584 15 7 2.6372 4.3227 -5.7431 16 14 4.1515 5.7816 -7.5394 17 1 5.1316 4.8551 -8.1608 18 1 2.9478 5.8811 -8.4033 19 1 4.7662 7.1252 -7.3903 20 6 4.5593 5.3486 -2.2860 21 7 4.4482 4.6481 -1.1788 22 6 4.1138 0.5812 1.2483 23 6 3.4634 1.1851 2.4968 24 6 3.9576 0.4325 3.7349 25 8 3.6496 -0.9565 3.6009 26 6 4.2691 -1.5857 2.4772 27 6 3.7873 -0.9142 1.1885 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 4.1896 3.1237 0.8372 32 1 3.4703 1.6866 -2.3865 33 1 3.6396 2.9239 -4.5091 34 1 2.1352 4.0601 -6.5305 35 1 4.8683 6.3823 -2.2388 36 1 5.1942 0.7169 1.2983 37 1 3.7364 2.2373 2.5770 38 1 2.3797 1.0936 2.4233 39 1 3.4653 0.8299 4.6225 40 1 5.0361 0.5582 3.8303 41 1 4.0011 -2.6421 2.4587 42 1 5.3516 -1.4864 2.5561 43 1 2.7102 -1.0481 1.0886 44 1 4.2920 -1.3633 0.3331 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167383579.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:38 Heat of formation + Delta-G solvation = -116.460126 kcal Electronic energy + Delta-G solvation = -27674.779153 eV Core-core repulsion = 23784.238859 eV Total energy + Delta-G solvation = -3890.540294 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.04525 -40.36119 -40.05830 -37.86683 -37.03520 -35.83992 -34.16846 -32.58933 -32.03667 -31.06897 -29.63215 -28.07268 -26.42324 -24.92465 -24.49647 -23.70967 -23.03773 -21.91264 -20.86667 -19.24800 -18.66273 -18.49581 -17.98006 -17.44590 -17.16211 -16.93733 -16.84544 -16.44949 -15.70229 -15.57194 -15.40244 -15.21200 -14.90385 -14.64249 -14.47052 -14.30450 -14.12890 -13.71554 -13.52357 -13.22673 -13.13724 -13.10769 -12.85109 -12.80033 -12.37518 -12.29087 -12.15133 -11.77876 -11.71476 -11.69328 -11.56457 -11.22635 -11.15453 -10.62302 -10.45515 -10.23052 -9.99912 -8.77541 -8.51784 -6.18857 0.81421 1.05454 1.17104 1.40390 1.49975 1.53821 1.70180 2.22794 2.43537 2.78309 3.02699 3.45174 3.56447 3.72076 3.81303 3.90565 4.05752 4.08309 4.26113 4.26610 4.29193 4.36119 4.44250 4.52530 4.59768 4.63732 4.67053 4.70851 4.79145 4.83927 4.89284 4.93125 5.09810 5.16764 5.23249 5.30232 5.35020 5.46733 5.51804 5.77449 5.92692 6.32068 6.34489 6.49076 6.74440 6.76797 6.87812 6.99412 7.75688 8.35462 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021859 B = 0.003182 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.636085 B = 8797.308801 C = 9349.333389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.350 6.350 3 C 0.439 3.561 4 O -0.534 6.534 5 C 0.183 3.817 6 H 0.120 0.880 7 N -0.706 5.706 8 C 0.285 3.715 9 C -0.204 4.204 10 C -0.110 4.110 11 C 0.004 3.996 12 C -0.489 4.489 13 H 0.081 0.919 14 C 0.033 3.967 15 N -0.836 5.836 16 Si 0.986 3.014 17 H -0.261 1.261 18 H -0.272 1.272 19 H -0.258 1.258 20 C -0.002 4.002 21 N -0.528 5.528 22 C -0.080 4.080 23 C -0.154 4.154 24 C 0.067 3.933 25 O -0.402 6.402 26 C 0.062 3.938 27 C -0.159 4.159 28 H 0.047 0.953 29 H 0.138 0.862 30 H 0.056 0.944 31 H 0.401 0.599 32 H 0.113 0.887 33 H 0.117 0.883 34 H 0.287 0.713 35 H 0.138 0.862 36 H 0.112 0.888 37 H 0.075 0.925 38 H 0.048 0.952 39 H 0.101 0.899 40 H 0.070 0.930 41 H 0.110 0.890 42 H 0.065 0.935 43 H 0.086 0.914 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.548 -14.640 12.249 19.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.266 6.266 3 C 0.280 3.720 4 O -0.422 6.422 5 C 0.073 3.927 6 H 0.137 0.863 7 N -0.344 5.344 8 C 0.051 3.949 9 C -0.228 4.228 10 C -0.137 4.137 11 C -0.001 4.001 12 C -0.519 4.519 13 H 0.099 0.901 14 C -0.181 4.181 15 N -0.464 5.464 16 Si 0.807 3.193 17 H -0.186 1.186 18 H -0.197 1.197 19 H -0.181 1.181 20 C -0.160 4.160 21 N -0.243 5.243 22 C -0.098 4.098 23 C -0.192 4.192 24 C -0.009 4.009 25 O -0.322 6.322 26 C -0.014 4.014 27 C -0.197 4.197 28 H 0.066 0.934 29 H 0.156 0.844 30 H 0.075 0.925 31 H 0.238 0.762 32 H 0.131 0.869 33 H 0.135 0.865 34 H 0.097 0.903 35 H 0.155 0.845 36 H 0.130 0.870 37 H 0.094 0.906 38 H 0.067 0.933 39 H 0.119 0.881 40 H 0.088 0.912 41 H 0.128 0.872 42 H 0.083 0.917 43 H 0.104 0.896 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.140 -14.272 12.941 19.299 hybrid contribution -0.659 0.773 -1.693 1.975 sum 0.482 -13.498 11.248 17.577 Atomic orbital electron populations 1.23484 0.76080 1.05578 1.01676 1.86568 1.23992 1.32345 1.83692 1.25427 0.93878 0.81408 0.71267 1.90685 1.67688 1.37957 1.45843 1.20618 0.85044 0.83853 1.03176 0.86281 1.43368 1.75946 1.09727 1.05389 1.17918 1.01388 0.89299 0.86273 1.20940 1.08933 1.00128 0.92768 1.21307 1.01005 0.94231 0.97114 1.18666 0.94166 0.92953 0.94319 1.19610 1.24551 1.12354 0.95418 0.90084 1.26751 0.92460 0.94050 1.04827 1.69886 1.13900 1.29432 1.33141 0.85145 0.78680 0.79700 0.75818 1.18566 1.19680 1.18118 1.22393 1.08250 0.98423 0.86910 1.66549 1.18643 1.06395 1.32730 1.21431 1.01959 0.95960 0.90496 1.22297 1.00098 1.00789 0.96040 1.22579 1.00691 0.80811 0.96836 1.87911 1.73200 1.22997 1.48044 1.22717 0.97266 0.97594 0.83820 1.22470 1.04415 0.92618 1.00174 0.93442 0.84406 0.92469 0.76218 0.86907 0.86529 0.90262 0.84466 0.87014 0.90642 0.93322 0.88088 0.91205 0.87190 0.91657 0.89581 0.88542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.56 113.37 1.20 1.76 16 2 O -0.35 -9.22 7.67 -51.43 -0.39 -9.62 16 3 C 0.44 14.32 5.52 71.24 0.39 14.71 16 4 O -0.53 -22.46 16.10 21.99 0.35 -22.11 16 5 C 0.18 5.21 1.99 44.24 0.09 5.30 16 6 H 0.12 3.28 6.41 -2.39 -0.02 3.27 16 7 N -0.71 -25.19 4.68 -327.89 -1.53 -26.72 16 8 C 0.28 13.11 7.52 133.32 1.00 14.12 16 9 C -0.20 -9.72 9.07 22.23 0.20 -9.52 16 10 C -0.11 -5.87 8.75 22.64 0.20 -5.67 16 11 C 0.00 0.22 5.59 -21.18 -0.12 0.10 16 12 C -0.49 -26.42 9.07 23.39 0.21 -26.21 16 13 H 0.08 4.18 7.90 -2.91 -0.02 4.15 16 14 C 0.03 1.65 5.17 85.23 0.44 2.09 16 15 N -0.84 -44.32 10.92 21.82 0.24 -44.09 16 16 Si 0.99 38.31 29.59 68.60 2.03 40.34 16 17 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 18 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 19 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 20 C 0.00 -0.13 10.97 85.36 0.94 0.81 16 21 N -0.53 -26.42 10.37 -191.20 -1.98 -28.40 16 22 C -0.08 -1.58 2.21 -10.67 -0.02 -1.61 16 23 C -0.15 -3.17 4.99 30.68 0.15 -3.02 16 24 C 0.07 1.11 6.84 72.01 0.49 1.61 16 25 O -0.40 -7.65 10.77 -148.98 -1.60 -9.25 16 26 C 0.06 0.88 6.84 72.01 0.49 1.37 16 27 C -0.16 -2.59 5.15 30.69 0.16 -2.43 16 28 H 0.05 1.19 8.13 -2.39 -0.02 1.17 16 29 H 0.14 1.89 8.14 -2.38 -0.02 1.87 16 30 H 0.06 1.29 8.13 -2.39 -0.02 1.27 16 31 H 0.40 13.34 7.37 -92.71 -0.68 12.66 16 32 H 0.11 4.73 6.10 -2.91 -0.02 4.71 16 33 H 0.12 6.40 6.19 -2.91 -0.02 6.38 16 34 H 0.29 13.77 8.30 -92.71 -0.77 13.00 16 35 H 0.14 6.68 8.06 -2.91 -0.02 6.66 16 36 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.08 1.59 6.90 -2.39 -0.02 1.57 16 38 H 0.05 1.21 6.96 -2.38 -0.02 1.19 16 39 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.09 1.66 5.30 -2.39 -0.01 1.65 16 44 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -70.25 354.40 3.28 -66.97 By element: Atomic # 1 Polarization: 39.13 SS G_CDS: 0.35 Total: 39.48 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: 5.82 Total: -6.60 kcal Atomic # 7 Polarization: -95.93 SS G_CDS: -3.28 Total: -99.21 kcal Atomic # 8 Polarization: -39.33 SS G_CDS: -1.64 Total: -40.98 kcal Atomic # 14 Polarization: 38.31 SS G_CDS: 2.03 Total: 40.34 kcal Total: -70.25 3.28 -66.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167383579.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.494 kcal (2) G-P(sol) polarization free energy of solvation -70.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds