Wall clock time and date at job start Tue Mar 31 2020 12:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34229 * 116.99753 * 2 1 4 4 O 1.20826 * 120.00401 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99821 * 180.02562 * 3 2 1 6 6 H 1.08998 * 109.47259 * 299.99817 * 5 3 2 7 7 N 1.46504 * 109.47248 * 180.02562 * 5 3 2 8 8 C 1.38366 * 120.00098 * 85.00015 * 7 5 3 9 9 C 1.39705 * 119.43312 * 359.72065 * 8 7 5 10 10 C 1.36564 * 119.49491 * 179.76393 * 9 8 7 11 11 C 1.41321 * 118.40575 * 0.50509 * 10 9 8 12 12 C 1.41202 * 120.57195 * 179.76112 * 11 10 9 13 13 H 1.08005 * 120.00088 * 330.34744 * 12 11 10 14 14 C 1.39868 * 120.00214 * 150.33412 * 12 11 10 15 15 N 1.30895 * 120.00004 * 161.77936 * 14 12 11 16 16 Si 1.86802 * 120.00051 * 341.78313 * 14 12 11 17 17 H 1.48497 * 109.47367 * 95.40331 * 16 14 12 18 18 H 1.48499 * 109.47157 * 215.40514 * 16 14 12 19 19 H 1.48507 * 109.47218 * 335.40483 * 16 14 12 20 20 C 1.40751 * 118.86179 * 359.74696 * 11 10 9 21 21 N 1.31491 * 120.36890 * 359.97438 * 20 11 10 22 22 C 1.52996 * 109.47237 * 60.00306 * 5 3 2 23 23 C 1.53175 * 109.54464 * 59.55338 * 22 5 3 24 24 C 1.53089 * 109.16466 * 183.15351 * 23 22 5 25 25 O 1.42906 * 109.41633 * 57.61205 * 24 23 22 26 26 C 1.42910 * 114.09438 * 298.84187 * 25 24 23 27 27 C 1.53089 * 109.41325 * 61.15724 * 26 25 24 28 28 H 1.08997 * 109.47544 * 59.99656 * 1 2 3 29 29 H 1.08999 * 109.47304 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46961 * 299.99511 * 1 2 3 31 31 H 0.97005 * 119.99283 * 265.00255 * 7 5 3 32 32 H 1.08000 * 120.25408 * 0.02562 * 9 8 7 33 33 H 1.07997 * 120.79789 * 180.22752 * 10 9 8 34 34 H 0.97010 * 119.99837 * 180.02562 * 15 14 12 35 35 H 1.08003 * 119.81824 * 179.97438 * 20 11 10 36 36 H 1.08996 * 109.54512 * 179.82413 * 22 5 3 37 37 H 1.09000 * 109.52216 * 303.06047 * 23 22 5 38 38 H 1.09003 * 109.51866 * 63.24878 * 23 22 5 39 39 H 1.09007 * 109.48382 * 297.63138 * 24 23 22 40 40 H 1.08997 * 109.48432 * 177.59274 * 24 23 22 41 41 H 1.08998 * 109.47860 * 301.17266 * 26 25 24 42 42 H 1.08999 * 109.48134 * 181.13995 * 26 25 24 43 43 H 1.08999 * 109.52082 * 182.48610 * 27 26 25 44 44 H 1.09004 * 109.57660 * 62.33026 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9564 0.7807 0.8891 7 7 3.9817 2.6798 0.0002 8 6 4.0782 3.3721 1.1943 9 6 3.7711 2.7215 2.3918 10 6 3.8706 3.4021 3.5715 11 6 4.2743 4.7559 3.5346 12 6 4.3875 5.5044 4.7266 13 1 3.7575 5.2715 5.5724 14 6 5.3157 6.5472 4.8121 15 7 5.1928 7.4579 5.7442 16 14 6.7307 6.6403 3.5962 17 1 6.3630 7.5445 2.4770 18 1 7.9384 7.1665 4.2814 19 1 7.0155 5.2837 3.0633 20 6 4.5619 5.3454 2.2893 21 7 4.4560 4.6446 1.1817 22 6 4.1128 0.5817 -1.2502 23 6 3.5568 1.2681 -2.5016 24 6 4.0457 0.5198 -3.7444 25 8 3.6354 -0.8470 -3.6680 26 6 4.1636 -1.5527 -2.5431 27 6 3.6795 -0.8875 -1.2521 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 4.1890 3.1246 -0.8366 32 1 3.4614 1.6868 2.3850 33 1 3.6418 2.9187 4.5098 34 1 5.8364 8.1814 5.8033 35 1 4.8714 6.3791 2.2431 36 1 5.2012 0.6408 -1.2534 37 1 2.4674 1.2524 -2.4720 38 1 3.9064 2.3000 -2.5367 39 1 5.1334 0.5704 -3.7949 40 1 3.6185 0.9781 -4.6363 41 1 5.2527 -1.5291 -2.5780 42 1 3.8213 -2.5872 -2.5695 43 1 4.1167 -1.3973 -0.3936 44 1 2.5925 -0.9468 -1.1960 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167383580.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:42 Heat of formation + Delta-G solvation = -92.928845 kcal Electronic energy + Delta-G solvation = -27705.093250 eV Core-core repulsion = 23815.573349 eV Total energy + Delta-G solvation = -3889.519901 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.95942 -39.27331 -38.82530 -36.72470 -35.86230 -34.06206 -32.86573 -31.38670 -31.33444 -29.74325 -28.56091 -27.03739 -24.58439 -24.05624 -23.61401 -22.47442 -21.41521 -20.70688 -19.94523 -17.73206 -17.49645 -17.12857 -16.84957 -16.31416 -16.22245 -16.15311 -15.56748 -14.95387 -14.94016 -14.52561 -14.06699 -13.82241 -13.76111 -13.55084 -13.16099 -13.07404 -12.76318 -12.67996 -12.45683 -12.24568 -11.97012 -11.84308 -11.58514 -11.36807 -11.19165 -10.88876 -10.87154 -10.70876 -10.49112 -10.42873 -10.38066 -10.04204 -9.76888 -9.51092 -9.00864 -8.60853 -8.22877 -7.02722 -6.92735 -4.36104 2.32605 2.43210 2.55392 2.78306 3.13932 3.21721 3.31860 3.63050 3.70849 3.97325 4.34436 4.40485 4.56016 4.61391 4.78029 4.82718 4.97226 5.06128 5.10752 5.15592 5.20520 5.29072 5.39791 5.43218 5.44960 5.45948 5.51637 5.62759 5.75244 5.81080 5.88546 6.04081 6.17759 6.20314 6.43699 6.45248 6.84291 6.95396 6.97685 7.18736 7.26209 7.69358 7.83796 7.95360 8.23196 8.30378 8.56024 8.74450 9.40581 10.10106 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020721 B = 0.003409 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.929719 B = 8212.493239 C = 8990.018460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.359 6.359 3 C 0.434 3.566 4 O -0.484 6.484 5 C 0.186 3.814 6 H 0.114 0.886 7 N -0.714 5.714 8 C 0.276 3.724 9 C -0.182 4.182 10 C -0.137 4.137 11 C 0.016 3.984 12 C -0.442 4.442 13 H 0.090 0.910 14 C 0.083 3.917 15 N -0.811 5.811 16 Si 0.906 3.094 17 H -0.267 1.267 18 H -0.288 1.288 19 H -0.249 1.249 20 C 0.006 3.994 21 N -0.501 5.501 22 C -0.089 4.089 23 C -0.156 4.156 24 C 0.065 3.935 25 O -0.384 6.384 26 C 0.064 3.936 27 C -0.164 4.164 28 H 0.059 0.941 29 H 0.097 0.903 30 H 0.061 0.939 31 H 0.398 0.602 32 H 0.098 0.902 33 H 0.111 0.889 34 H 0.285 0.715 35 H 0.134 0.866 36 H 0.095 0.905 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.053 0.947 40 H 0.094 0.906 41 H 0.049 0.951 42 H 0.094 0.906 43 H 0.080 0.920 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.757 -17.055 -14.220 22.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.276 6.276 3 C 0.272 3.728 4 O -0.368 6.368 5 C 0.075 3.925 6 H 0.132 0.868 7 N -0.353 5.353 8 C 0.045 3.955 9 C -0.205 4.205 10 C -0.164 4.164 11 C 0.010 3.990 12 C -0.472 4.472 13 H 0.108 0.892 14 C -0.135 4.135 15 N -0.436 5.436 16 Si 0.732 3.268 17 H -0.193 1.193 18 H -0.215 1.215 19 H -0.172 1.172 20 C -0.153 4.153 21 N -0.215 5.215 22 C -0.108 4.108 23 C -0.194 4.194 24 C -0.012 4.012 25 O -0.303 6.303 26 C -0.013 4.013 27 C -0.202 4.202 28 H 0.077 0.923 29 H 0.116 0.884 30 H 0.080 0.920 31 H 0.234 0.766 32 H 0.116 0.884 33 H 0.130 0.870 34 H 0.095 0.905 35 H 0.151 0.849 36 H 0.113 0.887 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.071 0.929 40 H 0.112 0.888 41 H 0.068 0.932 42 H 0.113 0.887 43 H 0.098 0.902 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.908 -16.308 -14.842 22.133 hybrid contribution 0.286 0.322 0.492 0.654 sum -1.622 -15.987 -14.350 21.544 Atomic orbital electron populations 1.23214 0.77472 1.03222 1.02433 1.86588 1.22707 1.33936 1.84352 1.25202 0.93291 0.81484 0.72779 1.90698 1.66586 1.36287 1.43244 1.20290 0.85918 0.85333 1.00949 0.86818 1.43346 1.76543 1.08701 1.06680 1.17576 1.03457 0.89540 0.84915 1.20693 1.07735 0.99193 0.92925 1.20978 1.05217 0.93890 0.96284 1.18500 0.94226 0.92084 0.94179 1.19230 1.18075 1.10819 0.99081 0.89168 1.26080 0.98982 0.92935 0.95504 1.69718 1.33763 1.09094 1.31019 0.86410 0.79739 0.80831 0.79809 1.19283 1.21550 1.17231 1.22251 1.07812 0.98170 0.87058 1.66481 1.16432 1.05648 1.32904 1.21404 1.01515 0.95289 0.92601 1.22308 1.01916 1.00280 0.94906 1.22539 0.98915 0.82025 0.97747 1.87931 1.73217 1.22993 1.46152 1.22565 0.97562 0.95999 0.85191 1.22534 1.04880 0.94061 0.98723 0.92263 0.88414 0.92035 0.76641 0.88438 0.87046 0.90486 0.84944 0.88683 0.91107 0.90221 0.92895 0.88797 0.93240 0.88740 0.90179 0.88075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 101.05 1.07 1.38 16 2 O -0.36 -4.37 7.44 -39.25 -0.29 -4.66 16 3 C 0.43 6.47 5.70 36.01 0.21 6.68 16 4 O -0.48 -9.19 16.10 -18.75 -0.30 -9.49 16 5 C 0.19 2.51 2.04 -69.08 -0.14 2.37 16 6 H 0.11 1.47 6.42 -51.93 -0.33 1.14 16 7 N -0.71 -12.14 4.66 -54.99 -0.26 -12.39 16 8 C 0.28 5.98 7.52 -155.13 -1.17 4.82 16 9 C -0.18 -3.87 9.06 -39.64 -0.36 -4.22 16 10 C -0.14 -3.18 9.88 -39.01 -0.39 -3.57 16 11 C 0.02 0.40 5.12 -106.65 -0.55 -0.15 16 12 C -0.44 -11.96 9.58 -37.85 -0.36 -12.32 16 13 H 0.09 2.54 8.06 -52.48 -0.42 2.11 16 14 C 0.08 2.18 5.41 -17.34 -0.09 2.09 16 15 N -0.81 -21.66 13.93 55.54 0.77 -20.89 16 16 Si 0.91 20.90 24.52 -169.99 -4.17 16.73 16 17 H -0.27 -6.04 6.71 56.52 0.38 -5.66 16 18 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.25 -5.96 6.86 56.52 0.39 -5.57 16 20 C 0.01 0.15 8.37 -16.75 -0.14 0.01 16 21 N -0.50 -12.14 10.37 -11.79 -0.12 -12.26 16 22 C -0.09 -0.90 2.27 -90.44 -0.20 -1.10 16 23 C -0.16 -1.60 5.00 -26.59 -0.13 -1.73 16 24 C 0.06 0.57 6.84 37.20 0.25 0.83 16 25 O -0.38 -3.92 10.77 -35.23 -0.38 -4.30 16 26 C 0.06 0.51 6.84 37.20 0.25 0.76 16 27 C -0.16 -1.42 5.01 -26.59 -0.13 -1.55 16 28 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 29 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 31 H 0.40 6.37 7.07 -40.82 -0.29 6.09 16 32 H 0.10 1.77 6.10 -52.49 -0.32 1.45 16 33 H 0.11 2.37 8.06 -52.49 -0.42 1.95 16 34 H 0.28 6.89 8.30 -40.82 -0.34 6.55 16 35 H 0.13 3.36 4.72 -52.48 -0.25 3.11 16 36 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.84 7.11 -51.93 -0.37 0.47 16 38 H 0.08 0.82 6.66 -51.93 -0.35 0.47 16 39 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 40 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.10 1.00 5.13 -51.93 -0.27 0.73 16 LS Contribution 348.54 15.07 5.25 5.25 Total: -1.00 -31.76 348.54 -7.37 -39.13 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -5.99 Total: 8.60 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: -1.88 Total: -5.71 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: 0.40 Total: -45.55 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.97 Total: -18.46 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.17 Total: 16.73 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.76 -7.37 -39.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167383580.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.799 kcal (2) G-P(sol) polarization free energy of solvation -31.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds