Wall clock time and date at job start Tue Mar 31 2020 12:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34229 * 116.99753 * 2 1 4 4 O 1.20826 * 120.00401 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99821 * 180.02562 * 3 2 1 6 6 H 1.08998 * 109.47259 * 299.99817 * 5 3 2 7 7 N 1.46504 * 109.47248 * 180.02562 * 5 3 2 8 8 C 1.38366 * 120.00098 * 85.00015 * 7 5 3 9 9 C 1.39705 * 119.43312 * 359.72065 * 8 7 5 10 10 C 1.36564 * 119.49491 * 179.76393 * 9 8 7 11 11 C 1.41321 * 118.40575 * 0.50509 * 10 9 8 12 12 C 1.41202 * 120.57195 * 179.76112 * 11 10 9 13 13 H 1.08005 * 120.00088 * 330.34744 * 12 11 10 14 14 C 1.39868 * 120.00214 * 150.33412 * 12 11 10 15 15 N 1.30895 * 120.00004 * 161.77936 * 14 12 11 16 16 Si 1.86802 * 120.00051 * 341.78313 * 14 12 11 17 17 H 1.48497 * 109.47367 * 95.40331 * 16 14 12 18 18 H 1.48499 * 109.47157 * 215.40514 * 16 14 12 19 19 H 1.48507 * 109.47218 * 335.40483 * 16 14 12 20 20 C 1.40751 * 118.86179 * 359.74696 * 11 10 9 21 21 N 1.31491 * 120.36890 * 359.97438 * 20 11 10 22 22 C 1.52996 * 109.47237 * 60.00306 * 5 3 2 23 23 C 1.53175 * 109.54464 * 59.55338 * 22 5 3 24 24 C 1.53089 * 109.16466 * 183.15351 * 23 22 5 25 25 O 1.42906 * 109.41633 * 57.61205 * 24 23 22 26 26 C 1.42910 * 114.09438 * 298.84187 * 25 24 23 27 27 C 1.53089 * 109.41325 * 61.15724 * 26 25 24 28 28 H 1.08997 * 109.47544 * 59.99656 * 1 2 3 29 29 H 1.08999 * 109.47304 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46961 * 299.99511 * 1 2 3 31 31 H 0.97005 * 119.99283 * 265.00255 * 7 5 3 32 32 H 1.08000 * 120.25408 * 0.02562 * 9 8 7 33 33 H 1.07997 * 120.79789 * 180.22752 * 10 9 8 34 34 H 0.97010 * 119.99837 * 180.02562 * 15 14 12 35 35 H 1.08003 * 119.81824 * 179.97438 * 20 11 10 36 36 H 1.08996 * 109.54512 * 179.82413 * 22 5 3 37 37 H 1.09000 * 109.52216 * 303.06047 * 23 22 5 38 38 H 1.09003 * 109.51866 * 63.24878 * 23 22 5 39 39 H 1.09007 * 109.48382 * 297.63138 * 24 23 22 40 40 H 1.08997 * 109.48432 * 177.59274 * 24 23 22 41 41 H 1.08998 * 109.47860 * 301.17266 * 26 25 24 42 42 H 1.08999 * 109.48134 * 181.13995 * 26 25 24 43 43 H 1.08999 * 109.52082 * 182.48610 * 27 26 25 44 44 H 1.09004 * 109.57660 * 62.33026 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9564 0.7807 0.8891 7 7 3.9817 2.6798 0.0002 8 6 4.0782 3.3721 1.1943 9 6 3.7711 2.7215 2.3918 10 6 3.8706 3.4021 3.5715 11 6 4.2743 4.7559 3.5346 12 6 4.3875 5.5044 4.7266 13 1 3.7575 5.2715 5.5724 14 6 5.3157 6.5472 4.8121 15 7 5.1928 7.4579 5.7442 16 14 6.7307 6.6403 3.5962 17 1 6.3630 7.5445 2.4770 18 1 7.9384 7.1665 4.2814 19 1 7.0155 5.2837 3.0633 20 6 4.5619 5.3454 2.2893 21 7 4.4560 4.6446 1.1817 22 6 4.1128 0.5817 -1.2502 23 6 3.5568 1.2681 -2.5016 24 6 4.0457 0.5198 -3.7444 25 8 3.6354 -0.8470 -3.6680 26 6 4.1636 -1.5527 -2.5431 27 6 3.6795 -0.8875 -1.2521 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 4.1890 3.1246 -0.8366 32 1 3.4614 1.6868 2.3850 33 1 3.6418 2.9187 4.5098 34 1 5.8364 8.1814 5.8033 35 1 4.8714 6.3791 2.2431 36 1 5.2012 0.6408 -1.2534 37 1 2.4674 1.2524 -2.4720 38 1 3.9064 2.3000 -2.5367 39 1 5.1334 0.5704 -3.7949 40 1 3.6185 0.9781 -4.6363 41 1 5.2527 -1.5291 -2.5780 42 1 3.8213 -2.5872 -2.5695 43 1 4.1167 -1.3973 -0.3936 44 1 2.5925 -0.9468 -1.1960 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167383580.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:41 Heat of formation + Delta-G solvation = -113.975994 kcal Electronic energy + Delta-G solvation = -27706.005923 eV Core-core repulsion = 23815.573349 eV Total energy + Delta-G solvation = -3890.432574 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.07755 -40.58477 -40.07251 -37.92279 -37.07102 -35.73272 -34.29423 -33.18472 -32.05262 -31.38440 -29.70021 -28.08085 -26.25022 -25.06058 -24.45128 -24.11601 -22.84832 -22.04417 -20.91852 -19.57541 -18.65054 -18.53706 -18.11870 -17.59403 -17.41674 -16.92946 -16.80385 -16.44300 -15.76564 -15.57032 -15.49149 -15.15432 -15.08411 -14.91685 -14.49714 -14.44533 -14.32429 -14.08683 -13.69937 -13.22475 -13.11807 -13.08234 -12.93693 -12.76362 -12.42190 -12.34200 -12.18092 -11.93034 -11.74332 -11.64946 -11.58016 -11.27156 -11.13061 -10.73377 -10.46597 -10.43508 -10.09090 -8.87856 -8.76933 -6.35194 0.60557 0.76542 1.15987 1.27225 1.36914 1.45725 1.63728 2.10356 2.34875 2.64628 3.02657 3.43513 3.49612 3.57780 3.76210 3.87733 3.92661 4.07424 4.20838 4.29241 4.30311 4.31075 4.34930 4.40440 4.46887 4.59916 4.62588 4.69166 4.70295 4.79392 4.84260 4.91936 5.01991 5.08669 5.11714 5.17616 5.30789 5.40781 5.42461 5.53429 5.86237 6.11161 6.32182 6.32910 6.49435 6.72638 6.76114 6.84422 7.57813 8.20981 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020721 B = 0.003409 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.929719 B = 8212.493239 C = 8990.018460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.347 6.347 3 C 0.439 3.561 4 O -0.532 6.532 5 C 0.180 3.820 6 H 0.129 0.871 7 N -0.706 5.706 8 C 0.296 3.704 9 C -0.184 4.184 10 C -0.133 4.133 11 C -0.008 4.008 12 C -0.474 4.474 13 H 0.062 0.938 14 C 0.050 3.950 15 N -0.851 5.851 16 Si 0.959 3.041 17 H -0.263 1.263 18 H -0.271 1.271 19 H -0.262 1.262 20 C -0.006 4.006 21 N -0.524 5.524 22 C -0.081 4.081 23 C -0.155 4.155 24 C 0.066 3.934 25 O -0.403 6.403 26 C 0.061 3.939 27 C -0.160 4.160 28 H 0.055 0.945 29 H 0.137 0.863 30 H 0.051 0.949 31 H 0.403 0.597 32 H 0.135 0.865 33 H 0.127 0.873 34 H 0.293 0.707 35 H 0.127 0.873 36 H 0.112 0.888 37 H 0.049 0.951 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.099 0.901 41 H 0.064 0.936 42 H 0.109 0.891 43 H 0.099 0.901 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.975 -20.100 -16.279 25.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.263 6.263 3 C 0.281 3.719 4 O -0.420 6.420 5 C 0.071 3.929 6 H 0.147 0.853 7 N -0.344 5.344 8 C 0.062 3.938 9 C -0.208 4.208 10 C -0.160 4.160 11 C -0.014 4.014 12 C -0.505 4.505 13 H 0.080 0.920 14 C -0.164 4.164 15 N -0.478 5.478 16 Si 0.783 3.217 17 H -0.188 1.188 18 H -0.197 1.197 19 H -0.186 1.186 20 C -0.163 4.163 21 N -0.240 5.240 22 C -0.100 4.100 23 C -0.193 4.193 24 C -0.010 4.010 25 O -0.323 6.323 26 C -0.016 4.016 27 C -0.197 4.197 28 H 0.073 0.927 29 H 0.155 0.845 30 H 0.070 0.930 31 H 0.240 0.760 32 H 0.152 0.848 33 H 0.145 0.855 34 H 0.104 0.896 35 H 0.144 0.856 36 H 0.130 0.870 37 H 0.068 0.932 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.118 0.882 41 H 0.082 0.918 42 H 0.127 0.873 43 H 0.117 0.883 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.129 -19.390 -16.919 25.758 hybrid contribution -0.137 0.965 0.936 1.352 sum -1.266 -18.425 -15.982 24.424 Atomic orbital electron populations 1.23494 0.76042 1.05589 1.01789 1.86594 1.23988 1.32172 1.83519 1.25326 0.93714 0.81479 0.71427 1.90697 1.67660 1.37897 1.45739 1.20686 0.85270 0.83469 1.03521 0.85339 1.43492 1.75581 1.09964 1.05398 1.18055 1.00059 0.88918 0.86799 1.21022 1.06938 1.00854 0.91938 1.21299 1.03564 0.93212 0.97940 1.18586 0.95761 0.93259 0.93772 1.19182 1.19398 1.12817 0.99092 0.92002 1.26643 1.00410 0.92471 0.96840 1.69739 1.35174 1.10100 1.32750 0.85591 0.77874 0.80003 0.78194 1.18833 1.19700 1.18619 1.22194 1.08378 0.98300 0.87394 1.66549 1.18187 1.06887 1.32336 1.21438 1.02250 0.95851 0.90490 1.22282 1.00575 1.00467 0.95960 1.22578 0.99810 0.81494 0.97145 1.87916 1.73796 1.23440 1.47106 1.22729 0.98447 0.96387 0.83994 1.22520 1.04199 0.92948 1.00077 0.92663 0.84528 0.93023 0.75993 0.84774 0.85487 0.89624 0.85580 0.86975 0.93199 0.90582 0.91338 0.88243 0.91784 0.87269 0.88263 0.89294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 10.56 113.37 1.20 1.63 16 2 O -0.35 -7.52 7.44 -51.40 -0.38 -7.90 16 3 C 0.44 12.16 5.70 71.24 0.41 12.57 16 4 O -0.53 -19.66 16.10 21.96 0.35 -19.31 16 5 C 0.18 4.30 2.04 44.24 0.09 4.39 16 6 H 0.13 2.76 6.42 -2.39 -0.02 2.75 16 7 N -0.71 -22.34 4.66 -327.90 -1.53 -23.87 16 8 C 0.30 12.29 7.52 133.32 1.00 13.29 16 9 C -0.18 -7.41 9.06 22.23 0.20 -7.21 16 10 C -0.13 -6.10 9.88 22.64 0.22 -5.88 16 11 C -0.01 -0.44 5.12 -21.18 -0.11 -0.55 16 12 C -0.47 -26.71 9.58 23.39 0.22 -26.49 16 13 H 0.06 3.70 8.06 -2.91 -0.02 3.67 16 14 C 0.05 2.73 5.41 85.23 0.46 3.19 16 15 N -0.85 -47.00 13.93 21.82 0.30 -46.69 16 16 Si 0.96 43.85 24.52 68.60 1.68 45.53 16 17 H -0.26 -11.68 6.71 99.48 0.67 -11.01 16 18 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 19 H -0.26 -12.40 6.86 99.48 0.68 -11.71 16 20 C -0.01 -0.31 8.37 85.36 0.71 0.40 16 21 N -0.52 -25.03 10.37 -191.20 -1.98 -27.02 16 22 C -0.08 -1.36 2.27 -10.68 -0.02 -1.39 16 23 C -0.15 -2.81 5.00 30.68 0.15 -2.66 16 24 C 0.07 1.00 6.84 72.01 0.49 1.49 16 25 O -0.40 -7.05 10.77 -148.98 -1.60 -8.65 16 26 C 0.06 0.74 6.84 72.01 0.49 1.23 16 27 C -0.16 -2.14 5.01 30.68 0.15 -1.99 16 28 H 0.05 1.05 8.13 -2.39 -0.02 1.03 16 29 H 0.14 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.05 1.05 8.13 -2.38 -0.02 1.03 16 31 H 0.40 12.09 7.07 -92.70 -0.66 11.43 16 32 H 0.13 4.37 6.10 -2.91 -0.02 4.35 16 33 H 0.13 5.30 8.06 -2.91 -0.02 5.28 16 34 H 0.29 14.57 8.30 -92.70 -0.77 13.80 16 35 H 0.13 6.50 4.72 -2.91 -0.01 6.49 16 36 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.05 1.12 7.11 -2.39 -0.02 1.10 16 38 H 0.08 1.42 6.66 -2.39 -0.02 1.40 16 39 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 40 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.09 1.45 5.13 -2.38 -0.01 1.43 16 Total: -1.00 -70.79 348.54 2.84 -67.95 By element: Atomic # 1 Polarization: 27.60 SS G_CDS: 0.32 Total: 27.91 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: 5.68 Total: -7.96 kcal Atomic # 7 Polarization: -94.37 SS G_CDS: -3.21 Total: -97.58 kcal Atomic # 8 Polarization: -34.22 SS G_CDS: -1.63 Total: -35.86 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.68 Total: 45.53 kcal Total: -70.79 2.84 -67.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167383580.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.023 kcal (2) G-P(sol) polarization free energy of solvation -70.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds