Wall clock time and date at job start Tue Mar 31 2020 12:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34235 * 116.99829 * 2 1 4 4 O 1.20824 * 119.99818 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00013 * 179.97438 * 3 2 1 6 6 H 1.09005 * 109.46653 * 300.00239 * 5 3 2 7 7 N 1.46493 * 109.47147 * 180.02562 * 5 3 2 8 8 C 1.38099 * 120.00078 * 84.99851 * 7 5 3 9 9 N 1.32267 * 119.90335 * 0.02711 * 8 7 5 10 10 C 1.31973 * 121.86378 * 179.72566 * 9 8 7 11 11 C 1.38678 * 121.44341 * 0.54220 * 10 9 8 12 12 C 1.38004 * 119.63028 * 359.44336 * 11 10 9 13 13 C 1.40998 * 118.28227 * 0.27912 * 12 11 10 14 14 C 1.41018 * 120.70664 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00028 * 204.88967 * 14 13 12 16 16 C 1.39949 * 120.00278 * 24.89635 * 14 13 12 17 17 N 1.30868 * 119.99726 * 14.50487 * 16 14 13 18 18 Si 1.86792 * 120.00181 * 194.50576 * 16 14 13 19 19 H 1.48506 * 109.47050 * 59.99775 * 18 16 14 20 20 H 1.48508 * 109.47237 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47246 * 299.99924 * 18 16 14 22 22 C 1.52996 * 109.46893 * 60.00265 * 5 3 2 23 23 C 1.53175 * 109.54458 * 59.55499 * 22 5 3 24 24 C 1.53097 * 109.16159 * 183.15064 * 23 22 5 25 25 O 1.42907 * 109.41396 * 57.61057 * 24 23 22 26 26 C 1.42893 * 114.09699 * 298.84039 * 25 24 23 27 27 C 1.53090 * 109.41875 * 61.15922 * 26 25 24 28 28 H 1.08995 * 109.46606 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47610 * 300.00040 * 1 2 3 30 30 H 1.09001 * 109.46541 * 60.00327 * 1 2 3 31 31 H 0.96996 * 120.00122 * 265.00254 * 7 5 3 32 32 H 1.07997 * 119.27847 * 180.28800 * 10 9 8 33 33 H 1.08001 * 120.18804 * 179.72061 * 11 10 9 34 34 H 1.08005 * 120.85917 * 180.29348 * 12 11 10 35 35 H 0.97004 * 119.99967 * 180.02562 * 17 16 14 36 36 H 1.09007 * 109.54117 * 179.82535 * 22 5 3 37 37 H 1.09000 * 109.52186 * 303.05903 * 23 22 5 38 38 H 1.09000 * 109.51980 * 63.24957 * 23 22 5 39 39 H 1.08994 * 109.47977 * 297.62554 * 24 23 22 40 40 H 1.09002 * 109.48003 * 177.59027 * 24 23 22 41 41 H 1.09000 * 109.48336 * 301.17440 * 26 25 24 42 42 H 1.08999 * 109.48435 * 181.14279 * 26 25 24 43 43 H 1.09004 * 109.52591 * 182.48510 * 27 26 25 44 44 H 1.09003 * 109.57422 * 62.32560 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9557 0.7810 0.8909 7 7 3.9817 2.6798 0.0011 8 6 4.0770 3.3713 1.1927 9 7 3.7934 2.7631 2.3325 10 6 3.8766 3.3850 3.4935 11 6 4.2566 4.7162 3.5755 12 6 4.5670 5.4093 2.4233 13 6 4.4790 4.7301 1.1908 14 6 4.7850 5.3889 -0.0179 15 1 4.3552 5.0418 -0.9459 16 6 5.6457 6.4924 -0.0150 17 7 6.3846 6.7431 1.0356 18 14 5.7397 7.6075 -1.5106 19 1 4.4021 8.1965 -1.7738 20 1 6.7178 8.6956 -1.2562 21 1 6.1735 6.8173 -2.6908 22 6 4.1138 0.5812 -1.2483 23 6 3.5588 1.2672 -2.5004 24 6 4.0487 0.5183 -3.7426 25 8 3.6383 -0.8485 -3.6658 26 6 4.1656 -1.5536 -2.5404 27 6 3.6805 -0.8880 -1.2499 28 1 -0.3632 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 4.1896 3.1244 -0.8355 32 1 3.6397 2.8466 4.3992 33 1 4.3136 5.2065 4.5361 34 1 4.8698 6.4453 2.4645 35 1 6.9810 7.5082 1.0377 36 1 5.2023 0.6403 -1.2507 37 1 2.4693 1.2515 -2.4716 38 1 3.9085 2.2990 -2.5357 39 1 5.1363 0.5690 -3.7922 40 1 3.6221 0.9763 -4.6350 41 1 5.2548 -1.5300 -2.5743 42 1 3.8234 -2.5881 -2.5666 43 1 4.1171 -1.3975 -0.3908 44 1 2.5935 -0.9472 -1.1948 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167383643.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:45 Heat of formation + Delta-G solvation = -98.938206 kcal Electronic energy + Delta-G solvation = -28260.889697 eV Core-core repulsion = 24371.109210 eV Total energy + Delta-G solvation = -3889.780487 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.60011 -39.02310 -38.45313 -36.32180 -35.48181 -33.99897 -32.99119 -31.12634 -30.42886 -29.41768 -27.92968 -26.47805 -25.33627 -23.68209 -23.48502 -21.74106 -21.19452 -20.48029 -19.59658 -17.29709 -17.18261 -17.05478 -16.56061 -16.03960 -15.96618 -15.75070 -15.27617 -14.78032 -14.69358 -14.19838 -13.95926 -13.65455 -13.46847 -13.31745 -12.98192 -12.73856 -12.48907 -12.31800 -12.09291 -11.93680 -11.67204 -11.44980 -11.36812 -11.32595 -11.09256 -10.94418 -10.60512 -10.57256 -10.44147 -10.18458 -10.11426 -9.81857 -9.53697 -9.34349 -9.12894 -8.14290 -7.95437 -6.86203 -6.60471 -4.29047 2.70631 2.70818 2.88997 3.03774 3.05921 3.17365 3.26230 3.84946 3.89590 4.14074 4.66317 4.67294 4.70759 4.87276 5.02345 5.14109 5.20718 5.26868 5.32121 5.36971 5.51096 5.60965 5.64206 5.66797 5.71824 5.77234 5.83265 5.90729 6.03775 6.06998 6.14548 6.42093 6.43268 6.71554 6.76414 6.81338 7.08812 7.12843 7.15383 7.58169 7.76646 7.95814 8.14355 8.27496 8.38472 8.59464 8.75227 8.91819 9.69849 10.17516 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012102 B = 0.004878 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.118398 B = 5738.919404 C = 7147.303174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.361 6.361 3 C 0.444 3.556 4 O -0.491 6.491 5 C 0.188 3.812 6 H 0.118 0.882 7 N -0.702 5.702 8 C 0.301 3.699 9 N -0.531 5.531 10 C 0.002 3.998 11 C -0.187 4.187 12 C -0.123 4.123 13 C 0.039 3.961 14 C -0.454 4.454 15 H 0.073 0.927 16 C 0.075 3.925 17 N -0.799 5.799 18 Si 0.908 3.092 19 H -0.265 1.265 20 H -0.279 1.279 21 H -0.266 1.266 22 C -0.091 4.091 23 C -0.157 4.157 24 C 0.065 3.935 25 O -0.386 6.386 26 C 0.064 3.936 27 C -0.163 4.163 28 H 0.094 0.906 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.408 0.592 32 H 0.118 0.882 33 H 0.095 0.905 34 H 0.129 0.871 35 H 0.280 0.720 36 H 0.093 0.907 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.053 0.947 40 H 0.093 0.907 41 H 0.048 0.952 42 H 0.092 0.908 43 H 0.078 0.922 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.169 -12.062 -6.266 13.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.278 6.278 3 C 0.284 3.716 4 O -0.376 6.376 5 C 0.077 3.923 6 H 0.135 0.865 7 N -0.341 5.341 8 C 0.065 3.935 9 N -0.248 5.248 10 C -0.152 4.152 11 C -0.210 4.210 12 C -0.149 4.149 13 C 0.032 3.968 14 C -0.485 4.485 15 H 0.091 0.909 16 C -0.142 4.142 17 N -0.425 5.425 18 Si 0.733 3.267 19 H -0.189 1.189 20 H -0.203 1.203 21 H -0.191 1.191 22 C -0.110 4.110 23 C -0.195 4.195 24 C -0.012 4.012 25 O -0.304 6.304 26 C -0.013 4.013 27 C -0.201 4.201 28 H 0.113 0.887 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.247 0.753 32 H 0.135 0.865 33 H 0.114 0.886 34 H 0.146 0.854 35 H 0.091 0.909 36 H 0.111 0.889 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.071 0.929 40 H 0.111 0.889 41 H 0.067 0.933 42 H 0.111 0.889 43 H 0.097 0.903 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.631 -12.639 -6.200 14.539 hybrid contribution 0.293 2.000 -0.458 2.072 sum -3.337 -10.640 -6.658 12.987 Atomic orbital electron populations 1.23143 0.78105 1.02834 1.02153 1.86598 1.22231 1.34424 1.84570 1.25201 0.93287 0.81136 0.71990 1.90650 1.66675 1.36368 1.43866 1.20187 0.85446 0.86400 1.00251 0.86494 1.43493 1.75316 1.08565 1.06742 1.18386 1.01422 0.88645 0.85061 1.66449 1.20559 1.39861 0.97917 1.21323 1.07782 0.92916 0.93135 1.21431 1.05385 0.96135 0.98012 1.21423 1.02609 1.00004 0.90898 1.17871 0.94927 0.89201 0.94788 1.19107 1.24218 1.11205 0.94013 0.90852 1.25807 0.93601 0.97328 0.97430 1.69786 1.17771 1.25416 1.29510 0.86370 0.78991 0.79729 0.81650 1.18931 1.20349 1.19065 1.21425 1.01457 0.95157 0.92991 1.22309 1.01800 1.00405 0.94943 1.22540 0.98917 0.81934 0.97816 1.87906 1.73323 1.23100 1.46106 1.22559 0.97508 0.95869 0.85367 1.22515 1.04741 0.94365 0.98430 0.88737 0.92317 0.92492 0.75341 0.86476 0.88648 0.85365 0.90863 0.88897 0.91220 0.90151 0.92900 0.88898 0.93334 0.88943 0.90336 0.88204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 101.05 1.07 1.46 16 2 O -0.36 -5.43 7.44 -39.27 -0.29 -5.73 16 3 C 0.44 8.07 5.91 36.01 0.21 8.28 16 4 O -0.49 -10.77 16.10 -18.75 -0.30 -11.07 16 5 C 0.19 3.23 2.36 -69.09 -0.16 3.06 16 6 H 0.12 2.10 7.53 -51.93 -0.39 1.71 16 7 N -0.70 -14.44 4.57 -54.62 -0.25 -14.69 16 8 C 0.30 7.40 7.39 -155.02 -1.15 6.25 16 9 N -0.53 -12.91 9.17 -11.86 -0.11 -13.02 16 10 C 0.00 0.05 11.17 -17.33 -0.19 -0.14 16 11 C -0.19 -4.45 10.08 -39.50 -0.40 -4.85 16 12 C -0.12 -3.20 8.79 -38.62 -0.34 -3.54 16 13 C 0.04 1.02 5.60 -106.47 -0.60 0.43 16 14 C -0.45 -11.52 8.54 -37.89 -0.32 -11.84 16 15 H 0.07 1.76 6.67 -52.49 -0.35 1.41 16 16 C 0.08 1.83 5.23 -17.32 -0.09 1.74 16 17 N -0.80 -20.09 10.83 55.55 0.60 -19.49 16 18 Si 0.91 18.24 29.58 -169.99 -5.03 13.21 16 19 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 20 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 21 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 22 C -0.09 -1.21 2.27 -90.44 -0.20 -1.42 16 23 C -0.16 -2.05 5.00 -26.59 -0.13 -2.19 16 24 C 0.06 0.73 6.84 37.21 0.25 0.98 16 25 O -0.39 -4.75 10.77 -35.23 -0.38 -5.13 16 26 C 0.06 0.65 6.84 37.20 0.25 0.90 16 27 C -0.16 -1.85 5.01 -26.59 -0.13 -1.98 16 28 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 30 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 31 H 0.41 8.10 5.15 -40.82 -0.21 7.89 16 32 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 33 H 0.10 1.99 8.06 -52.49 -0.42 1.57 16 34 H 0.13 3.41 6.17 -52.48 -0.32 3.09 16 35 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 36 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.07 1.01 7.11 -51.93 -0.37 0.65 16 38 H 0.08 1.08 6.66 -51.93 -0.35 0.74 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.10 1.25 5.13 -51.93 -0.27 0.98 16 LS Contribution 353.44 15.07 5.33 5.33 Total: -1.00 -30.55 353.44 -8.41 -38.96 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -6.04 Total: 14.46 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -1.93 Total: -2.84 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: 0.24 Total: -47.21 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -0.97 Total: -21.92 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.03 Total: 13.21 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.55 -8.41 -38.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167383643.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.978 kcal (2) G-P(sol) polarization free energy of solvation -30.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds