Wall clock time and date at job start Tue Mar 31 2020 12:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34235 * 116.99829 * 2 1 4 4 O 1.20824 * 119.99818 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00013 * 179.97438 * 3 2 1 6 6 H 1.09005 * 109.46653 * 300.00239 * 5 3 2 7 7 N 1.46493 * 109.47147 * 180.02562 * 5 3 2 8 8 C 1.38099 * 120.00078 * 84.99851 * 7 5 3 9 9 N 1.32267 * 119.90335 * 0.02711 * 8 7 5 10 10 C 1.31973 * 121.86378 * 179.72566 * 9 8 7 11 11 C 1.38678 * 121.44341 * 0.54220 * 10 9 8 12 12 C 1.38004 * 119.63028 * 359.44336 * 11 10 9 13 13 C 1.40998 * 118.28227 * 0.27912 * 12 11 10 14 14 C 1.41018 * 120.70664 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00028 * 204.88967 * 14 13 12 16 16 C 1.39949 * 120.00278 * 24.89635 * 14 13 12 17 17 N 1.30868 * 119.99726 * 14.50487 * 16 14 13 18 18 Si 1.86792 * 120.00181 * 194.50576 * 16 14 13 19 19 H 1.48506 * 109.47050 * 59.99775 * 18 16 14 20 20 H 1.48508 * 109.47237 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47246 * 299.99924 * 18 16 14 22 22 C 1.52996 * 109.46893 * 60.00265 * 5 3 2 23 23 C 1.53175 * 109.54458 * 59.55499 * 22 5 3 24 24 C 1.53097 * 109.16159 * 183.15064 * 23 22 5 25 25 O 1.42907 * 109.41396 * 57.61057 * 24 23 22 26 26 C 1.42893 * 114.09699 * 298.84039 * 25 24 23 27 27 C 1.53090 * 109.41875 * 61.15922 * 26 25 24 28 28 H 1.08995 * 109.46606 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47610 * 300.00040 * 1 2 3 30 30 H 1.09001 * 109.46541 * 60.00327 * 1 2 3 31 31 H 0.96996 * 120.00122 * 265.00254 * 7 5 3 32 32 H 1.07997 * 119.27847 * 180.28800 * 10 9 8 33 33 H 1.08001 * 120.18804 * 179.72061 * 11 10 9 34 34 H 1.08005 * 120.85917 * 180.29348 * 12 11 10 35 35 H 0.97004 * 119.99967 * 180.02562 * 17 16 14 36 36 H 1.09007 * 109.54117 * 179.82535 * 22 5 3 37 37 H 1.09000 * 109.52186 * 303.05903 * 23 22 5 38 38 H 1.09000 * 109.51980 * 63.24957 * 23 22 5 39 39 H 1.08994 * 109.47977 * 297.62554 * 24 23 22 40 40 H 1.09002 * 109.48003 * 177.59027 * 24 23 22 41 41 H 1.09000 * 109.48336 * 301.17440 * 26 25 24 42 42 H 1.08999 * 109.48435 * 181.14279 * 26 25 24 43 43 H 1.09004 * 109.52591 * 182.48510 * 27 26 25 44 44 H 1.09003 * 109.57422 * 62.32560 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9557 0.7810 0.8909 7 7 3.9817 2.6798 0.0011 8 6 4.0770 3.3713 1.1927 9 7 3.7934 2.7631 2.3325 10 6 3.8766 3.3850 3.4935 11 6 4.2566 4.7162 3.5755 12 6 4.5670 5.4093 2.4233 13 6 4.4790 4.7301 1.1908 14 6 4.7850 5.3889 -0.0179 15 1 4.3552 5.0418 -0.9459 16 6 5.6457 6.4924 -0.0150 17 7 6.3846 6.7431 1.0356 18 14 5.7397 7.6075 -1.5106 19 1 4.4021 8.1965 -1.7738 20 1 6.7178 8.6956 -1.2562 21 1 6.1735 6.8173 -2.6908 22 6 4.1138 0.5812 -1.2483 23 6 3.5588 1.2672 -2.5004 24 6 4.0487 0.5183 -3.7426 25 8 3.6383 -0.8485 -3.6658 26 6 4.1656 -1.5536 -2.5404 27 6 3.6805 -0.8880 -1.2499 28 1 -0.3632 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 4.1896 3.1244 -0.8355 32 1 3.6397 2.8466 4.3992 33 1 4.3136 5.2065 4.5361 34 1 4.8698 6.4453 2.4645 35 1 6.9810 7.5082 1.0377 36 1 5.2023 0.6403 -1.2507 37 1 2.4693 1.2515 -2.4716 38 1 3.9085 2.2990 -2.5357 39 1 5.1363 0.5690 -3.7922 40 1 3.6221 0.9763 -4.6350 41 1 5.2548 -1.5300 -2.5743 42 1 3.8234 -2.5881 -2.5666 43 1 4.1171 -1.3975 -0.3908 44 1 2.5935 -0.9472 -1.1948 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167383643.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:44 Heat of formation + Delta-G solvation = -116.677229 kcal Electronic energy + Delta-G solvation = -28261.658918 eV Core-core repulsion = 24371.109210 eV Total energy + Delta-G solvation = -3890.549708 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.93677 -40.28654 -40.02189 -37.70526 -36.85744 -35.86181 -34.39040 -32.33400 -32.02428 -30.96519 -29.26641 -27.80698 -27.12767 -24.76251 -24.50155 -23.48180 -22.85181 -21.85440 -20.84703 -19.17701 -18.66575 -18.50431 -17.87667 -17.45096 -17.07723 -16.87559 -16.83266 -16.25865 -15.68776 -15.59826 -15.38333 -15.02536 -14.84809 -14.77416 -14.36102 -14.25761 -14.08460 -13.76223 -13.29234 -13.21420 -13.14622 -13.07875 -12.85446 -12.68254 -12.37628 -12.20446 -12.15585 -11.72128 -11.65446 -11.62132 -11.57271 -11.15921 -11.11991 -10.81124 -10.45448 -10.03876 -9.86866 -8.69078 -8.41176 -6.20084 0.90342 1.13952 1.27752 1.39485 1.49348 1.53923 1.77756 2.20919 2.60552 2.82332 3.02385 3.51367 3.64263 3.77287 3.84122 4.00176 4.08567 4.23033 4.28947 4.29840 4.32532 4.43326 4.48525 4.60870 4.62969 4.67977 4.68955 4.78560 4.83610 4.87270 4.91457 4.98887 5.11147 5.17568 5.19966 5.27904 5.34617 5.54222 5.73555 5.87895 6.07458 6.31023 6.31343 6.63837 6.72484 6.84634 6.88449 7.05900 7.83527 8.36604 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012102 B = 0.004878 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.118398 B = 5738.919404 C = 7147.303174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.351 6.351 3 C 0.450 3.550 4 O -0.536 6.536 5 C 0.186 3.814 6 H 0.112 0.888 7 N -0.699 5.699 8 C 0.296 3.704 9 N -0.541 5.541 10 C -0.003 4.003 11 C -0.194 4.194 12 C -0.149 4.149 13 C 0.005 3.995 14 C -0.478 4.478 15 H 0.077 0.923 16 C 0.036 3.964 17 N -0.828 5.828 18 Si 0.978 3.022 19 H -0.268 1.268 20 H -0.270 1.270 21 H -0.254 1.254 22 C -0.084 4.084 23 C -0.154 4.154 24 C 0.068 3.932 25 O -0.400 6.400 26 C 0.063 3.937 27 C -0.157 4.157 28 H 0.138 0.862 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.408 0.592 32 H 0.149 0.851 33 H 0.121 0.879 34 H 0.114 0.886 35 H 0.287 0.713 36 H 0.103 0.897 37 H 0.050 0.950 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.103 0.897 41 H 0.063 0.937 42 H 0.113 0.887 43 H 0.093 0.907 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.916 -13.711 -7.466 15.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.267 6.267 3 C 0.292 3.708 4 O -0.425 6.425 5 C 0.076 3.924 6 H 0.129 0.871 7 N -0.338 5.338 8 C 0.058 3.942 9 N -0.258 5.258 10 C -0.157 4.157 11 C -0.216 4.216 12 C -0.176 4.176 13 C -0.002 4.002 14 C -0.509 4.509 15 H 0.095 0.905 16 C -0.178 4.178 17 N -0.454 5.454 18 Si 0.800 3.200 19 H -0.193 1.193 20 H -0.195 1.195 21 H -0.178 1.178 22 C -0.103 4.103 23 C -0.192 4.192 24 C -0.008 4.008 25 O -0.319 6.319 26 C -0.014 4.014 27 C -0.195 4.195 28 H 0.156 0.844 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.247 0.753 32 H 0.166 0.834 33 H 0.139 0.861 34 H 0.132 0.868 35 H 0.097 0.903 36 H 0.121 0.879 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.121 0.879 41 H 0.081 0.919 42 H 0.131 0.869 43 H 0.111 0.889 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.381 -14.348 -7.406 16.497 hybrid contribution 0.140 2.398 -0.012 2.403 sum -3.241 -11.950 -7.417 14.433 Atomic orbital electron populations 1.23466 0.76250 1.05492 1.01605 1.86593 1.23938 1.32453 1.83740 1.25246 0.93566 0.81264 0.70727 1.90635 1.67645 1.37949 1.46246 1.20417 0.85204 0.84694 1.02078 0.87077 1.43535 1.74858 1.09794 1.05565 1.18643 1.00535 0.88652 0.86321 1.66566 1.21119 1.39994 0.98168 1.21894 1.06646 0.93082 0.94028 1.21674 1.05022 0.96477 0.98455 1.21453 1.04308 0.99767 0.92042 1.18258 0.96079 0.90398 0.95432 1.19336 1.25092 1.12453 0.93987 0.90485 1.26626 0.92700 0.98120 1.00351 1.69852 1.18196 1.26012 1.31368 0.85299 0.78765 0.77772 0.78207 1.19269 1.19483 1.17764 1.21443 1.01772 0.96139 0.90952 1.22272 1.00555 1.00332 0.96053 1.22569 0.99760 0.81504 0.97006 1.87896 1.73826 1.23319 1.46877 1.22719 0.98393 0.96414 0.83837 1.22495 1.04103 0.92887 1.00024 0.84425 0.93361 0.92646 0.75272 0.83366 0.86137 0.86811 0.90270 0.87909 0.93093 0.91066 0.91461 0.87868 0.91898 0.86907 0.88889 0.89291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.56 113.37 1.20 1.79 16 2 O -0.35 -10.20 7.44 -51.47 -0.38 -10.58 16 3 C 0.45 16.37 5.91 71.24 0.42 16.79 16 4 O -0.54 -24.04 16.10 21.97 0.35 -23.69 16 5 C 0.19 6.35 2.36 44.25 0.10 6.46 16 6 H 0.11 3.96 7.53 -2.38 -0.02 3.94 16 7 N -0.70 -29.27 4.57 -326.70 -1.49 -30.76 16 8 C 0.30 14.85 7.39 134.05 0.99 15.84 16 9 N -0.54 -26.45 9.17 -191.45 -1.76 -28.20 16 10 C 0.00 -0.15 11.17 84.78 0.95 0.80 16 11 C -0.19 -9.29 10.08 22.32 0.22 -9.07 16 12 C -0.15 -8.01 8.79 22.89 0.20 -7.80 16 13 C 0.01 0.28 5.60 -21.06 -0.12 0.16 16 14 C -0.48 -24.86 8.54 23.37 0.20 -24.66 16 15 H 0.08 3.80 6.67 -2.91 -0.02 3.78 16 16 C 0.04 1.78 5.23 85.25 0.45 2.23 16 17 N -0.83 -42.46 10.83 21.83 0.24 -42.23 16 18 Si 0.98 37.42 29.58 68.60 2.03 39.45 16 19 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 20 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 21 H -0.25 -9.14 7.11 99.48 0.71 -8.43 16 22 C -0.08 -2.13 2.27 -10.67 -0.02 -2.16 16 23 C -0.15 -3.93 5.00 30.68 0.15 -3.77 16 24 C 0.07 1.41 6.84 72.01 0.49 1.90 16 25 O -0.40 -8.85 10.77 -148.98 -1.60 -10.46 16 26 C 0.06 1.09 6.84 72.01 0.49 1.58 16 27 C -0.16 -3.21 5.01 30.69 0.15 -3.06 16 28 H 0.14 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.05 1.24 8.13 -2.39 -0.02 1.22 16 30 H 0.05 1.32 8.13 -2.39 -0.02 1.30 16 31 H 0.41 16.63 5.15 -92.71 -0.48 16.15 16 32 H 0.15 5.81 8.06 -2.91 -0.02 5.79 16 33 H 0.12 4.99 8.06 -2.91 -0.02 4.96 16 34 H 0.11 6.31 6.17 -2.91 -0.02 6.29 16 35 H 0.29 13.41 8.30 -92.71 -0.77 12.64 16 36 H 0.10 2.43 8.14 -2.38 -0.02 2.41 16 37 H 0.05 1.48 7.11 -2.39 -0.02 1.46 16 38 H 0.07 1.92 6.66 -2.39 -0.02 1.91 16 39 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 44 H 0.09 2.04 5.13 -2.39 -0.01 2.03 16 Total: -1.00 -67.53 353.44 3.82 -63.72 By element: Atomic # 1 Polarization: 45.18 SS G_CDS: 0.55 Total: 45.73 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: 5.88 Total: -2.98 kcal Atomic # 7 Polarization: -98.18 SS G_CDS: -3.01 Total: -101.19 kcal Atomic # 8 Polarization: -43.09 SS G_CDS: -1.63 Total: -44.73 kcal Atomic # 14 Polarization: 37.42 SS G_CDS: 2.03 Total: 39.45 kcal Total: -67.53 3.82 -63.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167383643.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.961 kcal (2) G-P(sol) polarization free energy of solvation -67.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds