Wall clock time and date at job start Tue Mar 31 2020 12:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34229 * 117.00277 * 2 1 4 4 O 1.20829 * 119.99936 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00070 * 180.02562 * 3 2 1 6 6 H 1.08993 * 109.47510 * 60.00349 * 5 3 2 7 7 N 1.46501 * 109.46919 * 180.02562 * 5 3 2 8 8 C 1.39727 * 119.99593 * 274.99793 * 7 5 3 9 9 C 1.39325 * 120.36443 * 0.02562 * 8 7 5 10 10 N 1.31990 * 121.20608 * 180.02562 * 9 8 7 11 11 C 1.31486 * 122.06077 * 359.97438 * 10 9 8 12 12 C 1.40766 * 120.56669 * 0.02562 * 11 10 9 13 13 C 1.41425 * 120.62525 * 179.97438 * 12 11 10 14 14 H 1.07997 * 119.99624 * 23.37150 * 13 12 11 15 15 C 1.39931 * 119.99854 * 203.37396 * 13 12 11 16 16 N 1.30828 * 120.00210 * 17.33730 * 15 13 12 17 17 Si 1.86797 * 119.99962 * 197.34189 * 15 13 12 18 18 H 1.48504 * 109.47374 * 94.68229 * 17 15 13 19 19 H 1.48502 * 109.47402 * 214.68591 * 17 15 13 20 20 H 1.48506 * 109.46906 * 334.68534 * 17 15 13 21 21 C 1.38660 * 120.35793 * 179.72387 * 8 7 5 22 22 C 1.53000 * 109.47056 * 299.99645 * 5 3 2 23 23 C 1.53179 * 109.54091 * 60.00480 * 22 5 3 24 24 C 1.53092 * 109.16297 * 176.84792 * 23 22 5 25 25 O 1.42910 * 109.41418 * 302.38726 * 24 23 22 26 26 C 1.42910 * 114.09569 * 61.16048 * 25 24 23 27 27 C 1.53098 * 109.41132 * 298.84169 * 26 25 24 28 28 H 1.09002 * 109.47314 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47293 * 300.00068 * 1 2 3 30 30 H 1.09003 * 109.47052 * 59.99644 * 1 2 3 31 31 H 0.96998 * 120.00780 * 95.00038 * 7 5 3 32 32 H 1.08003 * 119.40092 * 0.02562 * 9 8 7 33 33 H 1.08004 * 119.72054 * 180.02562 * 11 10 9 34 34 H 0.96999 * 120.00470 * 180.02562 * 16 15 13 35 35 H 1.07998 * 120.93361 * 359.97438 * 21 8 7 36 36 H 1.08998 * 109.54938 * 299.82415 * 22 5 3 37 37 H 1.09001 * 109.52264 * 56.93812 * 23 22 5 38 38 H 1.09002 * 109.57260 * 296.78276 * 23 22 5 39 39 H 1.08997 * 109.48104 * 182.41108 * 24 23 22 40 40 H 1.08997 * 109.48385 * 62.37029 * 24 23 22 41 41 H 1.08995 * 109.47764 * 58.82345 * 26 25 24 42 42 H 1.08995 * 109.48062 * 178.86088 * 26 25 24 43 43 H 1.08996 * 109.52484 * 297.70127 * 27 26 25 44 44 H 1.09000 * 109.56868 * 177.54330 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9557 0.7809 -0.8908 7 7 3.9817 2.6797 0.0002 8 6 4.0782 3.3802 -1.2050 9 6 3.7806 2.7503 -2.4115 10 7 3.8666 3.3960 -3.5595 11 6 4.2338 4.6568 -3.6253 12 6 4.5531 5.3714 -2.4553 13 6 4.9488 6.7274 -2.5247 14 1 4.6613 7.3310 -3.3728 15 6 5.7127 7.2870 -1.4944 16 7 6.3441 6.5101 -0.6522 17 14 5.8307 9.1432 -1.3214 18 1 4.8106 9.6158 -0.3512 19 1 7.1847 9.5099 -0.8342 20 1 5.5905 9.7795 -2.6415 21 6 4.4651 4.7117 -1.2125 22 6 4.1138 0.5810 1.2483 23 6 3.6804 -0.8882 1.2499 24 6 4.2975 -1.5929 2.4607 25 8 5.7200 -1.4641 2.4114 26 6 6.1854 -0.1136 2.4550 27 6 5.6440 0.6505 1.2438 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 4.1898 3.1236 0.8371 32 1 3.4740 1.7148 -2.4075 33 1 4.2910 5.1485 -4.5852 34 1 6.8733 6.8979 0.0623 35 1 4.6968 5.2277 -0.2925 36 1 3.7277 1.0760 2.1394 37 1 4.0232 -1.3700 0.3342 38 1 2.5936 -0.9483 1.3082 39 1 4.0274 -2.6487 2.4435 40 1 3.9229 -1.1366 3.3769 41 1 5.8353 0.3620 3.3711 42 1 7.2751 -0.1038 2.4336 43 1 6.0264 0.1998 0.3281 44 1 5.9615 1.6919 1.2974 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167395306.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:57 Heat of formation + Delta-G solvation = -105.494953 kcal Electronic energy + Delta-G solvation = -27705.733791 eV Core-core repulsion = 23815.668983 eV Total energy + Delta-G solvation = -3890.064809 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.71532 -39.26693 -38.40636 -36.58625 -35.77264 -34.03920 -33.28946 -31.20969 -30.35740 -29.43330 -27.90671 -26.31827 -25.58876 -23.93658 -23.44532 -21.94163 -21.23189 -20.29143 -20.11114 -17.55667 -17.38160 -17.07637 -16.44677 -16.03505 -15.97677 -15.68748 -15.48983 -15.04602 -14.91161 -14.79448 -13.92163 -13.85168 -13.41418 -13.39562 -13.18123 -12.87822 -12.44188 -12.38718 -12.21290 -12.04214 -11.63989 -11.53043 -11.41492 -11.25528 -11.10984 -10.90778 -10.86259 -10.64671 -10.56759 -10.47789 -10.32677 -9.93642 -9.73624 -9.50590 -9.34507 -8.08848 -7.79363 -6.88811 -6.52943 -4.48533 2.39936 2.61463 2.78377 3.03227 3.07258 3.16084 3.23363 3.76513 3.86781 3.90671 4.45593 4.61348 4.64727 4.72563 4.86679 5.02263 5.10096 5.12588 5.17053 5.19375 5.28924 5.45438 5.50527 5.54247 5.57973 5.67623 5.75883 5.78406 6.01459 6.08089 6.11300 6.22638 6.45090 6.50800 6.56861 6.86243 7.04024 7.07844 7.11890 7.46272 7.63606 7.92946 7.96032 8.13360 8.29321 8.56904 8.73409 8.81539 9.72310 10.08011 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013875 B = 0.003841 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.553457 B = 7287.435414 C = 8437.102227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.360 6.360 3 C 0.434 3.566 4 O -0.485 6.485 5 C 0.181 3.819 6 H 0.115 0.885 7 N -0.725 5.725 8 C 0.176 3.824 9 C -0.095 4.095 10 N -0.444 5.444 11 C -0.048 4.048 12 C 0.095 3.905 13 C -0.449 4.449 14 H 0.083 0.917 15 C 0.077 3.923 16 N -0.787 5.787 17 Si 0.910 3.090 18 H -0.268 1.268 19 H -0.277 1.277 20 H -0.260 1.260 21 C -0.200 4.200 22 C -0.088 4.088 23 C -0.157 4.157 24 C 0.064 3.936 25 O -0.385 6.385 26 C 0.062 3.938 27 C -0.146 4.146 28 H 0.097 0.903 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.397 0.603 32 H 0.108 0.892 33 H 0.124 0.876 34 H 0.281 0.719 35 H 0.127 0.873 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.047 0.953 41 H 0.049 0.951 42 H 0.095 0.905 43 H 0.078 0.922 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.503 -12.897 9.325 16.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.277 6.277 3 C 0.272 3.728 4 O -0.369 6.369 5 C 0.070 3.930 6 H 0.132 0.868 7 N -0.358 5.358 8 C 0.076 3.924 9 C -0.254 4.254 10 N -0.151 5.151 11 C -0.212 4.212 12 C 0.090 3.910 13 C -0.479 4.479 14 H 0.101 0.899 15 C -0.142 4.142 16 N -0.412 5.412 17 Si 0.734 3.266 18 H -0.193 1.193 19 H -0.202 1.202 20 H -0.184 1.184 21 C -0.230 4.230 22 C -0.107 4.107 23 C -0.195 4.195 24 C -0.013 4.013 25 O -0.304 6.304 26 C -0.014 4.014 27 C -0.184 4.184 28 H 0.115 0.885 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.232 0.768 32 H 0.125 0.875 33 H 0.142 0.858 34 H 0.092 0.908 35 H 0.144 0.856 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.113 0.887 43 H 0.097 0.903 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.701 -13.350 8.671 16.343 hybrid contribution -0.181 1.885 1.241 2.264 sum -3.883 -11.465 9.912 15.645 Atomic orbital electron populations 1.23201 0.77572 1.03127 1.02415 1.86598 1.22613 1.34057 1.84445 1.25259 0.93328 0.81389 0.72783 1.90689 1.66630 1.36322 1.43240 1.20339 0.85439 0.86132 1.01074 0.86759 1.44063 1.75907 1.08662 1.07155 1.18580 0.95937 0.92417 0.85448 1.21111 1.18084 0.98849 0.87330 1.66807 1.09819 1.10340 1.28182 1.22348 1.11415 0.90375 0.97103 1.18273 0.88193 0.93541 0.90980 1.19578 1.28055 0.95297 1.05017 0.89897 1.25943 0.93149 1.00694 0.94399 1.69822 1.20897 1.37473 1.13022 0.86265 0.78233 0.82204 0.79863 1.19328 1.20228 1.18377 1.21065 1.10874 0.91789 0.99238 1.21332 0.96635 0.96169 0.96571 1.22428 1.02806 0.94107 1.00158 1.22565 0.81076 1.01041 0.96640 1.87928 1.21379 1.26324 1.94769 1.22596 0.99666 0.82448 0.96736 1.22207 0.93852 1.02324 1.00029 0.88462 0.92347 0.92036 0.76819 0.87478 0.85844 0.90849 0.85567 0.90486 0.90275 0.88718 0.88821 0.93467 0.93303 0.88660 0.90327 0.89716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 101.05 1.07 1.39 16 2 O -0.36 -4.65 7.54 -39.26 -0.30 -4.95 16 3 C 0.43 6.95 7.13 36.01 0.26 7.21 16 4 O -0.48 -9.70 16.11 -18.75 -0.30 -10.00 16 5 C 0.18 2.69 1.80 -69.08 -0.12 2.57 16 6 H 0.11 1.74 6.50 -51.93 -0.34 1.41 16 7 N -0.72 -13.13 4.14 -53.23 -0.22 -13.35 16 8 C 0.18 4.05 6.56 -83.70 -0.55 3.50 16 9 C -0.09 -2.27 10.34 -17.08 -0.18 -2.45 16 10 N -0.44 -11.41 10.33 -12.37 -0.13 -11.54 16 11 C -0.05 -1.24 10.97 -16.75 -0.18 -1.43 16 12 C 0.10 2.55 5.59 -106.69 -0.60 1.95 16 13 C -0.45 -11.71 9.08 -37.74 -0.34 -12.05 16 14 H 0.08 2.06 7.90 -52.49 -0.41 1.65 16 15 C 0.08 1.87 5.18 -17.35 -0.09 1.78 16 16 N -0.79 -19.52 10.92 55.55 0.61 -18.91 16 17 Si 0.91 18.21 29.59 -169.99 -5.03 13.18 16 18 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 19 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 20 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 21 C -0.20 -5.11 8.67 -38.39 -0.33 -5.44 16 22 C -0.09 -1.01 1.90 -90.44 -0.17 -1.18 16 23 C -0.16 -1.56 4.77 -26.59 -0.13 -1.69 16 24 C 0.06 0.58 6.84 37.21 0.25 0.84 16 25 O -0.39 -4.36 10.77 -35.23 -0.38 -4.74 16 26 C 0.06 0.63 6.84 37.21 0.25 0.88 16 27 C -0.15 -1.67 5.22 -26.59 -0.14 -1.80 16 28 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 30 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 31 H 0.40 6.76 8.45 -40.82 -0.34 6.42 16 32 H 0.11 2.33 6.19 -52.48 -0.32 2.00 16 33 H 0.12 2.99 8.06 -52.48 -0.42 2.56 16 34 H 0.28 6.31 8.30 -40.82 -0.34 5.97 16 35 H 0.13 3.28 6.19 -52.49 -0.33 2.95 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.09 0.92 5.57 -51.93 -0.29 0.63 16 39 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.08 1.04 7.59 -51.93 -0.39 0.64 16 LS Contribution 358.32 15.07 5.40 5.40 Total: -1.00 -30.91 358.32 -7.56 -38.47 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -6.21 Total: 12.36 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -1.00 Total: -5.92 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: 0.26 Total: -43.81 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -0.98 Total: -19.68 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.03 Total: 13.18 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.91 -7.56 -38.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167395306.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.022 kcal (2) G-P(sol) polarization free energy of solvation -30.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds