Wall clock time and date at job start Tue Mar 31 2020 12:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34229 * 117.00277 * 2 1 4 4 O 1.20829 * 119.99936 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00070 * 180.02562 * 3 2 1 6 6 H 1.08993 * 109.47510 * 60.00349 * 5 3 2 7 7 N 1.46501 * 109.46919 * 180.02562 * 5 3 2 8 8 C 1.39727 * 119.99593 * 274.99793 * 7 5 3 9 9 C 1.39325 * 120.36443 * 0.02562 * 8 7 5 10 10 N 1.31990 * 121.20608 * 180.02562 * 9 8 7 11 11 C 1.31486 * 122.06077 * 359.97438 * 10 9 8 12 12 C 1.40766 * 120.56669 * 0.02562 * 11 10 9 13 13 C 1.41425 * 120.62525 * 179.97438 * 12 11 10 14 14 H 1.07997 * 119.99624 * 23.37150 * 13 12 11 15 15 C 1.39931 * 119.99854 * 203.37396 * 13 12 11 16 16 N 1.30828 * 120.00210 * 17.33730 * 15 13 12 17 17 Si 1.86797 * 119.99962 * 197.34189 * 15 13 12 18 18 H 1.48504 * 109.47374 * 94.68229 * 17 15 13 19 19 H 1.48502 * 109.47402 * 214.68591 * 17 15 13 20 20 H 1.48506 * 109.46906 * 334.68534 * 17 15 13 21 21 C 1.38660 * 120.35793 * 179.72387 * 8 7 5 22 22 C 1.53000 * 109.47056 * 299.99645 * 5 3 2 23 23 C 1.53179 * 109.54091 * 60.00480 * 22 5 3 24 24 C 1.53092 * 109.16297 * 176.84792 * 23 22 5 25 25 O 1.42910 * 109.41418 * 302.38726 * 24 23 22 26 26 C 1.42910 * 114.09569 * 61.16048 * 25 24 23 27 27 C 1.53098 * 109.41132 * 298.84169 * 26 25 24 28 28 H 1.09002 * 109.47314 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47293 * 300.00068 * 1 2 3 30 30 H 1.09003 * 109.47052 * 59.99644 * 1 2 3 31 31 H 0.96998 * 120.00780 * 95.00038 * 7 5 3 32 32 H 1.08003 * 119.40092 * 0.02562 * 9 8 7 33 33 H 1.08004 * 119.72054 * 180.02562 * 11 10 9 34 34 H 0.96999 * 120.00470 * 180.02562 * 16 15 13 35 35 H 1.07998 * 120.93361 * 359.97438 * 21 8 7 36 36 H 1.08998 * 109.54938 * 299.82415 * 22 5 3 37 37 H 1.09001 * 109.52264 * 56.93812 * 23 22 5 38 38 H 1.09002 * 109.57260 * 296.78276 * 23 22 5 39 39 H 1.08997 * 109.48104 * 182.41108 * 24 23 22 40 40 H 1.08997 * 109.48385 * 62.37029 * 24 23 22 41 41 H 1.08995 * 109.47764 * 58.82345 * 26 25 24 42 42 H 1.08995 * 109.48062 * 178.86088 * 26 25 24 43 43 H 1.08996 * 109.52484 * 297.70127 * 27 26 25 44 44 H 1.09000 * 109.56868 * 177.54330 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9557 0.7809 -0.8908 7 7 3.9817 2.6797 0.0002 8 6 4.0782 3.3802 -1.2050 9 6 3.7806 2.7503 -2.4115 10 7 3.8666 3.3960 -3.5595 11 6 4.2338 4.6568 -3.6253 12 6 4.5531 5.3714 -2.4553 13 6 4.9488 6.7274 -2.5247 14 1 4.6613 7.3310 -3.3728 15 6 5.7127 7.2870 -1.4944 16 7 6.3441 6.5101 -0.6522 17 14 5.8307 9.1432 -1.3214 18 1 4.8106 9.6158 -0.3512 19 1 7.1847 9.5099 -0.8342 20 1 5.5905 9.7795 -2.6415 21 6 4.4651 4.7117 -1.2125 22 6 4.1138 0.5810 1.2483 23 6 3.6804 -0.8882 1.2499 24 6 4.2975 -1.5929 2.4607 25 8 5.7200 -1.4641 2.4114 26 6 6.1854 -0.1136 2.4550 27 6 5.6440 0.6505 1.2438 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 4.1898 3.1236 0.8371 32 1 3.4740 1.7148 -2.4075 33 1 4.2910 5.1485 -4.5852 34 1 6.8733 6.8979 0.0623 35 1 4.6968 5.2277 -0.2925 36 1 3.7277 1.0760 2.1394 37 1 4.0232 -1.3700 0.3342 38 1 2.5936 -0.9483 1.3082 39 1 4.0274 -2.6487 2.4435 40 1 3.9229 -1.1366 3.3769 41 1 5.8353 0.3620 3.3711 42 1 7.2751 -0.1038 2.4336 43 1 6.0264 0.1998 0.3281 44 1 5.9615 1.6919 1.2974 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167395306.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:56 Heat of formation + Delta-G solvation = -124.795007 kcal Electronic energy + Delta-G solvation = -27706.570705 eV Core-core repulsion = 23815.668983 eV Total energy + Delta-G solvation = -3890.901722 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.94425 -40.32393 -40.07880 -37.87853 -37.06443 -35.89828 -34.63089 -32.25492 -32.02406 -30.86104 -29.13502 -27.69802 -27.33103 -24.93826 -24.36828 -23.75232 -22.82870 -21.66743 -21.14181 -19.21744 -18.78207 -18.30852 -17.70506 -17.44683 -17.28933 -16.84123 -16.76259 -16.61675 -16.37999 -15.76058 -15.42335 -14.87601 -14.78311 -14.59275 -14.47887 -14.28070 -14.00323 -13.56522 -13.38963 -13.24970 -13.19471 -13.13498 -12.99696 -12.69900 -12.27258 -12.22154 -12.05530 -12.00972 -11.85120 -11.77685 -11.49205 -11.27972 -11.18464 -11.08563 -10.45705 -10.05702 -9.75934 -8.72887 -8.28570 -6.46161 0.87146 1.11216 1.13325 1.39614 1.52918 1.52947 1.67044 2.19337 2.48007 2.75235 3.02125 3.40664 3.64090 3.74394 3.78953 3.92890 4.05849 4.14310 4.25825 4.30605 4.31986 4.35552 4.37818 4.57545 4.59301 4.68155 4.69061 4.74387 4.82397 4.86705 4.92129 4.94116 5.13196 5.17692 5.23049 5.25808 5.31744 5.37198 5.61401 5.75967 5.97027 6.24309 6.31634 6.59625 6.66900 6.77399 6.79654 6.94018 7.75528 8.25783 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013875 B = 0.003841 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.553457 B = 7287.435414 C = 8437.102227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.348 6.348 3 C 0.440 3.560 4 O -0.530 6.530 5 C 0.178 3.822 6 H 0.114 0.886 7 N -0.716 5.716 8 C 0.191 3.809 9 C -0.107 4.107 10 N -0.454 5.454 11 C -0.076 4.076 12 C 0.072 3.928 13 C -0.481 4.481 14 H 0.083 0.917 15 C 0.040 3.960 16 N -0.809 5.809 17 Si 0.985 3.015 18 H -0.264 1.264 19 H -0.265 1.265 20 H -0.257 1.257 21 C -0.226 4.226 22 C -0.079 4.079 23 C -0.151 4.151 24 C 0.062 3.938 25 O -0.401 6.401 26 C 0.065 3.935 27 C -0.143 4.143 28 H 0.140 0.860 29 H 0.060 0.940 30 H 0.048 0.952 31 H 0.402 0.598 32 H 0.128 0.872 33 H 0.130 0.870 34 H 0.291 0.709 35 H 0.118 0.882 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.100 0.900 39 H 0.112 0.888 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.103 0.897 43 H 0.068 0.932 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.647 -13.890 11.004 18.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.264 6.264 3 C 0.281 3.719 4 O -0.418 6.418 5 C 0.069 3.931 6 H 0.131 0.869 7 N -0.348 5.348 8 C 0.089 3.911 9 C -0.267 4.267 10 N -0.161 5.161 11 C -0.240 4.240 12 C 0.067 3.933 13 C -0.510 4.510 14 H 0.102 0.898 15 C -0.178 4.178 16 N -0.434 5.434 17 Si 0.805 3.195 18 H -0.189 1.189 19 H -0.189 1.189 20 H -0.181 1.181 21 C -0.257 4.257 22 C -0.098 4.098 23 C -0.188 4.188 24 C -0.014 4.014 25 O -0.320 6.320 26 C -0.012 4.012 27 C -0.181 4.181 28 H 0.158 0.842 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.238 0.762 32 H 0.145 0.855 33 H 0.148 0.852 34 H 0.102 0.898 35 H 0.135 0.865 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.119 0.881 39 H 0.130 0.870 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.121 0.879 43 H 0.086 0.914 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.848 -14.410 10.369 18.165 hybrid contribution -0.188 2.029 0.771 2.178 sum -4.036 -12.382 11.141 17.138 Atomic orbital electron populations 1.23532 0.75719 1.05750 1.01925 1.86586 1.24264 1.31993 1.83551 1.25244 0.93489 0.81554 0.71575 1.90684 1.67582 1.37900 1.45611 1.20590 0.85283 0.84295 1.02973 0.86863 1.44053 1.75120 1.09830 1.05798 1.18542 0.93781 0.91814 0.86977 1.21471 1.18203 0.99740 0.87271 1.66783 1.09874 1.10311 1.29172 1.22472 1.13219 0.90843 0.97428 1.18599 0.88637 0.94367 0.91682 1.19854 1.29350 0.95516 1.06304 0.89842 1.26783 0.92071 1.05485 0.93416 1.69852 1.20668 1.39645 1.13217 0.85142 0.78670 0.75801 0.79841 1.18916 1.18906 1.18072 1.21046 1.12973 0.93064 0.98592 1.21320 0.96555 0.97063 0.94843 1.22397 1.03141 0.92590 1.00720 1.22717 0.80011 1.02219 0.96483 1.87917 1.22613 1.26677 1.94786 1.22619 1.00179 0.82040 0.96353 1.22162 0.93711 1.01786 1.00457 0.84245 0.92122 0.93355 0.76185 0.85463 0.85213 0.89790 0.86461 0.89701 0.90544 0.88145 0.86960 0.92285 0.92040 0.87919 0.91361 0.90880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 10.56 113.37 1.20 1.65 16 2 O -0.35 -8.28 7.54 -51.41 -0.39 -8.66 16 3 C 0.44 13.69 7.13 71.24 0.51 14.19 16 4 O -0.53 -21.14 16.11 21.96 0.35 -20.79 16 5 C 0.18 5.15 1.80 44.24 0.08 5.23 16 6 H 0.11 3.36 6.50 -2.39 -0.02 3.35 16 7 N -0.72 -26.01 4.14 -322.33 -1.33 -27.35 16 8 C 0.19 8.96 6.56 38.25 0.25 9.22 16 9 C -0.11 -5.19 10.34 84.93 0.88 -4.32 16 10 N -0.45 -23.87 10.33 -193.06 -1.99 -25.86 16 11 C -0.08 -4.09 10.97 85.36 0.94 -3.15 16 12 C 0.07 4.01 5.59 -21.20 -0.12 3.89 16 13 C -0.48 -25.74 9.08 23.47 0.21 -25.53 16 14 H 0.08 4.29 7.90 -2.91 -0.02 4.26 16 15 C 0.04 1.93 5.18 85.25 0.44 2.37 16 16 N -0.81 -40.45 10.92 21.82 0.24 -40.21 16 17 Si 0.99 37.06 29.59 68.60 2.03 39.09 16 18 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 19 H -0.26 -9.36 7.11 99.48 0.71 -8.66 16 20 H -0.26 -9.48 7.11 99.48 0.71 -8.78 16 21 C -0.23 -11.95 8.67 23.04 0.20 -11.75 16 22 C -0.08 -1.68 1.90 -10.67 -0.02 -1.70 16 23 C -0.15 -2.62 4.77 30.68 0.15 -2.47 16 24 C 0.06 0.95 6.84 72.01 0.49 1.44 16 25 O -0.40 -8.09 10.77 -148.98 -1.60 -9.70 16 26 C 0.06 1.18 6.84 72.01 0.49 1.68 16 27 C -0.14 -3.10 5.22 30.69 0.16 -2.94 16 28 H 0.14 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.06 1.14 8.13 -2.39 -0.02 1.12 16 30 H 0.05 1.06 8.13 -2.39 -0.02 1.04 16 31 H 0.40 13.76 8.45 -92.71 -0.78 12.97 16 32 H 0.13 5.50 6.19 -2.91 -0.02 5.48 16 33 H 0.13 6.57 8.06 -2.91 -0.02 6.54 16 34 H 0.29 13.00 8.30 -92.71 -0.77 12.23 16 35 H 0.12 6.30 6.19 -2.91 -0.02 6.28 16 36 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.10 1.64 5.57 -2.39 -0.01 1.63 16 39 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.07 1.75 7.59 -2.39 -0.02 1.73 16 Total: -1.00 -68.08 358.32 3.41 -64.67 By element: Atomic # 1 Polarization: 40.75 SS G_CDS: 0.24 Total: 40.99 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: 5.86 Total: -12.18 kcal Atomic # 7 Polarization: -90.33 SS G_CDS: -3.09 Total: -93.42 kcal Atomic # 8 Polarization: -37.51 SS G_CDS: -1.64 Total: -39.15 kcal Atomic # 14 Polarization: 37.06 SS G_CDS: 2.03 Total: 39.09 kcal Total: -68.08 3.41 -64.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167395306.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.121 kcal (2) G-P(sol) polarization free energy of solvation -68.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds