Wall clock time and date at job start Tue Mar 31 2020 12:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34226 * 116.99999 * 2 1 4 4 O 1.20828 * 119.99863 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00370 * 180.02562 * 3 2 1 6 6 H 1.09001 * 109.46825 * 299.99299 * 5 3 2 7 7 N 1.46499 * 109.47386 * 179.97438 * 5 3 2 8 8 C 1.39723 * 120.00046 * 85.00034 * 7 5 3 9 9 C 1.39339 * 120.36447 * 359.97438 * 8 7 5 10 10 N 1.31976 * 121.20966 * 180.02562 * 9 8 7 11 11 C 1.31504 * 122.05810 * 0.02562 * 10 9 8 12 12 C 1.40756 * 120.56216 * 0.02562 * 11 10 9 13 13 C 1.41431 * 120.62186 * 179.97438 * 12 11 10 14 14 H 1.07996 * 119.99790 * 23.36979 * 13 12 11 15 15 C 1.39927 * 120.00162 * 203.37877 * 13 12 11 16 16 N 1.30834 * 120.00243 * 17.33281 * 15 13 12 17 17 Si 1.86801 * 120.00000 * 197.33499 * 15 13 12 18 18 H 1.48499 * 109.46833 * 59.99727 * 17 15 13 19 19 H 1.48497 * 109.47177 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47193 * 299.99659 * 17 15 13 21 21 C 1.38657 * 120.36275 * 179.73100 * 8 7 5 22 22 C 1.52996 * 109.47506 * 59.99295 * 5 3 2 23 23 C 1.53174 * 109.62250 * 180.22520 * 22 5 3 24 24 C 1.53084 * 109.16793 * 176.89281 * 23 22 5 25 25 O 1.42907 * 109.41561 * 302.38972 * 24 23 22 26 26 C 1.42906 * 114.09340 * 61.15754 * 25 24 23 27 27 C 1.53087 * 109.41689 * 298.84192 * 26 25 24 28 28 H 1.09003 * 109.47147 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47504 * 299.99932 * 1 2 3 30 30 H 1.09000 * 109.47378 * 60.00190 * 1 2 3 31 31 H 0.97000 * 119.99924 * 264.99376 * 7 5 3 32 32 H 1.08004 * 119.39190 * 359.97438 * 9 8 7 33 33 H 1.07995 * 119.71304 * 180.02562 * 11 10 9 34 34 H 0.96999 * 119.99965 * 180.02562 * 16 15 13 35 35 H 1.07994 * 120.92861 * 359.96672 * 21 8 7 36 36 H 1.09007 * 109.54216 * 60.00312 * 22 5 3 37 37 H 1.09006 * 109.52110 * 296.80510 * 23 22 5 38 38 H 1.09008 * 109.51901 * 56.98348 * 23 22 5 39 39 H 1.09000 * 109.48678 * 182.41068 * 24 23 22 40 40 H 1.08998 * 109.48199 * 62.37168 * 24 23 22 41 41 H 1.09003 * 109.48288 * 178.85807 * 26 25 24 42 42 H 1.09004 * 109.48153 * 58.82355 * 26 25 24 43 43 H 1.09001 * 109.52337 * 297.70650 * 27 26 25 44 44 H 1.09006 * 109.52435 * 177.51454 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2749 -0.0006 6 1 3.9563 0.7808 0.8892 7 7 3.9816 2.6798 -0.0011 8 6 4.0790 3.3800 1.2041 9 6 3.7823 2.7496 2.4109 10 7 3.8682 3.3951 3.5588 11 6 4.2346 4.6564 3.6247 12 6 4.5517 5.3715 2.4546 13 6 4.9453 6.7282 2.5239 14 1 5.3667 7.1222 3.4369 15 6 4.7886 7.5600 1.4096 16 7 3.9888 7.2063 0.4365 17 14 5.7215 9.1754 1.3114 18 1 7.1814 8.9074 1.3567 19 1 5.3844 9.8652 0.0403 20 1 5.3406 10.0375 2.4590 21 6 4.4767 4.7082 1.2129 22 6 4.1129 0.5815 -1.2500 23 6 5.6429 0.6549 -1.2512 24 6 6.1818 -0.1082 -2.4639 25 8 5.7201 -1.4599 -2.4182 26 6 4.2978 -1.5923 -2.4624 27 6 3.6833 -0.8888 -1.2496 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 4.1890 3.1239 -0.8381 32 1 3.4757 1.7140 2.4066 33 1 4.2925 5.1475 4.5847 34 1 3.8804 7.7828 -0.3360 35 1 4.7173 5.2217 0.2938 36 1 3.7235 1.0749 -2.1407 37 1 5.9575 1.6971 -1.3073 38 1 6.0298 0.2055 -0.3366 39 1 7.2716 -0.0957 -2.4465 40 1 5.8272 0.3662 -3.3789 41 1 4.0304 -2.6489 -2.4438 42 1 3.9186 -1.1372 -3.3774 43 1 4.0306 -1.3694 -0.3350 44 1 2.5963 -0.9507 -1.3046 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167395307.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:00 Heat of formation + Delta-G solvation = -105.076239 kcal Electronic energy + Delta-G solvation = -27705.647688 eV Core-core repulsion = 23815.601036 eV Total energy + Delta-G solvation = -3890.046652 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.69544 -39.27359 -38.40096 -36.56590 -35.75913 -34.03270 -33.29290 -31.23526 -30.35413 -29.42983 -27.88652 -26.31314 -25.58295 -23.94789 -23.45473 -21.93532 -21.22118 -20.29395 -20.10676 -17.53255 -17.36903 -17.06693 -16.43638 -16.05330 -15.95937 -15.69035 -15.48361 -15.04579 -14.92784 -14.80040 -13.91927 -13.85823 -13.40587 -13.38944 -13.15974 -12.87482 -12.45259 -12.35465 -12.24675 -12.02819 -11.64130 -11.49497 -11.43775 -11.26762 -11.10075 -10.91607 -10.85835 -10.62677 -10.55956 -10.47768 -10.33633 -9.95458 -9.73162 -9.52118 -9.32390 -8.08795 -7.78458 -6.86549 -6.52398 -4.47911 2.43735 2.63586 2.80298 3.02560 3.05380 3.17539 3.24240 3.74373 3.87044 3.90358 4.44883 4.60292 4.64506 4.71643 4.85867 5.01803 5.11050 5.13068 5.17613 5.21167 5.27328 5.44291 5.51793 5.53947 5.55839 5.65753 5.75482 5.76680 5.98910 6.08380 6.09140 6.20061 6.46561 6.52540 6.57942 6.87210 7.04339 7.05584 7.12656 7.46851 7.64309 7.93392 7.99277 8.13867 8.29839 8.57289 8.74145 8.82094 9.72734 10.09731 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014060 B = 0.003771 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.013210 B = 7423.972892 C = 8342.980257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.361 6.361 3 C 0.431 3.569 4 O -0.480 6.480 5 C 0.181 3.819 6 H 0.115 0.885 7 N -0.725 5.725 8 C 0.176 3.824 9 C -0.095 4.095 10 N -0.444 5.444 11 C -0.048 4.048 12 C 0.096 3.904 13 C -0.451 4.451 14 H 0.082 0.918 15 C 0.076 3.924 16 N -0.785 5.785 17 Si 0.910 3.090 18 H -0.263 1.263 19 H -0.279 1.279 20 H -0.264 1.264 21 C -0.201 4.201 22 C -0.088 4.088 23 C -0.146 4.146 24 C 0.062 3.938 25 O -0.385 6.385 26 C 0.063 3.937 27 C -0.157 4.157 28 H 0.097 0.903 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.397 0.603 32 H 0.108 0.892 33 H 0.124 0.876 34 H 0.282 0.718 35 H 0.126 0.874 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.049 0.951 41 H 0.094 0.906 42 H 0.047 0.953 43 H 0.079 0.921 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.253 -13.826 -9.055 16.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.278 6.278 3 C 0.270 3.730 4 O -0.364 6.364 5 C 0.071 3.929 6 H 0.132 0.868 7 N -0.358 5.358 8 C 0.076 3.924 9 C -0.254 4.254 10 N -0.151 5.151 11 C -0.213 4.213 12 C 0.091 3.909 13 C -0.481 4.481 14 H 0.101 0.899 15 C -0.143 4.143 16 N -0.409 5.409 17 Si 0.734 3.266 18 H -0.187 1.187 19 H -0.204 1.204 20 H -0.188 1.188 21 C -0.231 4.231 22 C -0.108 4.108 23 C -0.184 4.184 24 C -0.015 4.015 25 O -0.304 6.304 26 C -0.013 4.013 27 C -0.195 4.195 28 H 0.115 0.885 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.232 0.768 32 H 0.125 0.875 33 H 0.141 0.859 34 H 0.093 0.907 35 H 0.144 0.856 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.113 0.887 40 H 0.067 0.933 41 H 0.112 0.888 42 H 0.066 0.934 43 H 0.097 0.903 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.736 -14.195 -8.435 16.529 hybrid contribution -0.110 1.869 -1.220 2.235 sum -0.846 -12.326 -9.655 15.680 Atomic orbital electron populations 1.23197 0.77572 1.03083 1.02452 1.86587 1.22613 1.34094 1.84527 1.25232 0.93327 0.81424 0.73011 1.90717 1.66550 1.36249 1.42898 1.20323 0.85551 0.86088 1.00967 0.86800 1.44058 1.75940 1.08686 1.07116 1.18582 0.96202 0.92177 0.85410 1.21110 1.18185 0.98885 0.87240 1.66807 1.09921 1.10243 1.28172 1.22339 1.10449 0.90987 0.97500 1.18258 0.87881 0.93555 0.91224 1.19528 1.36012 0.93905 0.98630 0.89942 1.25962 0.93269 1.00281 0.94757 1.69840 1.26454 1.37365 1.07284 0.86331 0.80894 0.80866 0.78464 1.18720 1.20351 1.18843 1.21057 1.11523 0.90818 0.99684 1.21334 0.96548 0.96215 0.96666 1.22203 0.93984 1.02146 1.00036 1.22593 0.99658 0.82489 0.96731 1.87926 1.21472 1.26213 1.94781 1.22571 0.81025 1.01067 0.96671 1.22429 1.02906 0.94060 1.00103 0.88487 0.92040 0.92331 0.76833 0.87492 0.85856 0.90738 0.85595 0.90457 0.89892 0.90318 0.88700 0.93289 0.88795 0.93441 0.90277 0.88660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.55 101.05 1.07 1.41 16 2 O -0.36 -4.77 7.55 -39.25 -0.30 -5.07 16 3 C 0.43 7.09 7.13 36.00 0.26 7.34 16 4 O -0.48 -10.00 16.11 -18.75 -0.30 -10.30 16 5 C 0.18 2.70 1.80 -69.09 -0.12 2.58 16 6 H 0.11 1.72 6.50 -51.93 -0.34 1.38 16 7 N -0.72 -13.14 4.14 -53.23 -0.22 -13.36 16 8 C 0.18 4.05 6.56 -83.70 -0.55 3.50 16 9 C -0.10 -2.28 10.34 -17.08 -0.18 -2.46 16 10 N -0.44 -11.42 10.33 -12.37 -0.13 -11.55 16 11 C -0.05 -1.25 10.97 -16.74 -0.18 -1.44 16 12 C 0.10 2.57 5.59 -106.69 -0.60 1.98 16 13 C -0.45 -11.74 9.08 -37.73 -0.34 -12.09 16 14 H 0.08 2.03 7.90 -52.49 -0.41 1.62 16 15 C 0.08 1.87 5.18 -17.34 -0.09 1.78 16 16 N -0.78 -19.99 10.92 55.55 0.61 -19.38 16 17 Si 0.91 18.20 29.59 -169.99 -5.03 13.17 16 18 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 19 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 20 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 21 C -0.20 -5.14 8.67 -38.39 -0.33 -5.47 16 22 C -0.09 -1.00 1.89 -90.44 -0.17 -1.17 16 23 C -0.15 -1.58 5.22 -26.60 -0.14 -1.72 16 24 C 0.06 0.60 6.84 37.20 0.25 0.86 16 25 O -0.39 -4.24 10.77 -35.23 -0.38 -4.62 16 26 C 0.06 0.57 6.84 37.20 0.25 0.83 16 27 C -0.16 -1.55 4.78 -26.59 -0.13 -1.67 16 28 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 30 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 31 H 0.40 6.76 8.44 -40.82 -0.34 6.42 16 32 H 0.11 2.33 6.19 -52.48 -0.32 2.00 16 33 H 0.12 2.98 8.06 -52.49 -0.42 2.56 16 34 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 35 H 0.13 3.27 6.20 -52.49 -0.33 2.94 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.08 0.94 7.58 -51.93 -0.39 0.55 16 38 H 0.08 0.91 8.14 -51.92 -0.42 0.48 16 39 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.10 0.93 5.56 -51.93 -0.29 0.64 16 LS Contribution 358.32 15.07 5.40 5.40 Total: -1.00 -31.46 358.32 -7.56 -39.03 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: -6.21 Total: 12.44 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -1.00 Total: -5.75 kcal Atomic # 7 Polarization: -44.55 SS G_CDS: 0.26 Total: -44.29 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.98 Total: -19.99 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.03 Total: 13.17 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.46 -7.56 -39.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167395307.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.050 kcal (2) G-P(sol) polarization free energy of solvation -31.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds