Wall clock time and date at job start Tue Mar 31 2020 12:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34226 * 116.99999 * 2 1 4 4 O 1.20828 * 119.99863 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00370 * 180.02562 * 3 2 1 6 6 H 1.09001 * 109.46825 * 299.99299 * 5 3 2 7 7 N 1.46499 * 109.47386 * 179.97438 * 5 3 2 8 8 C 1.39723 * 120.00046 * 85.00034 * 7 5 3 9 9 C 1.39339 * 120.36447 * 359.97438 * 8 7 5 10 10 N 1.31976 * 121.20966 * 180.02562 * 9 8 7 11 11 C 1.31504 * 122.05810 * 0.02562 * 10 9 8 12 12 C 1.40756 * 120.56216 * 0.02562 * 11 10 9 13 13 C 1.41431 * 120.62186 * 179.97438 * 12 11 10 14 14 H 1.07996 * 119.99790 * 23.36979 * 13 12 11 15 15 C 1.39927 * 120.00162 * 203.37877 * 13 12 11 16 16 N 1.30834 * 120.00243 * 17.33281 * 15 13 12 17 17 Si 1.86801 * 120.00000 * 197.33499 * 15 13 12 18 18 H 1.48499 * 109.46833 * 59.99727 * 17 15 13 19 19 H 1.48497 * 109.47177 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47193 * 299.99659 * 17 15 13 21 21 C 1.38657 * 120.36275 * 179.73100 * 8 7 5 22 22 C 1.52996 * 109.47506 * 59.99295 * 5 3 2 23 23 C 1.53174 * 109.62250 * 180.22520 * 22 5 3 24 24 C 1.53084 * 109.16793 * 176.89281 * 23 22 5 25 25 O 1.42907 * 109.41561 * 302.38972 * 24 23 22 26 26 C 1.42906 * 114.09340 * 61.15754 * 25 24 23 27 27 C 1.53087 * 109.41689 * 298.84192 * 26 25 24 28 28 H 1.09003 * 109.47147 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47504 * 299.99932 * 1 2 3 30 30 H 1.09000 * 109.47378 * 60.00190 * 1 2 3 31 31 H 0.97000 * 119.99924 * 264.99376 * 7 5 3 32 32 H 1.08004 * 119.39190 * 359.97438 * 9 8 7 33 33 H 1.07995 * 119.71304 * 180.02562 * 11 10 9 34 34 H 0.96999 * 119.99965 * 180.02562 * 16 15 13 35 35 H 1.07994 * 120.92861 * 359.96672 * 21 8 7 36 36 H 1.09007 * 109.54216 * 60.00312 * 22 5 3 37 37 H 1.09006 * 109.52110 * 296.80510 * 23 22 5 38 38 H 1.09008 * 109.51901 * 56.98348 * 23 22 5 39 39 H 1.09000 * 109.48678 * 182.41068 * 24 23 22 40 40 H 1.08998 * 109.48199 * 62.37168 * 24 23 22 41 41 H 1.09003 * 109.48288 * 178.85807 * 26 25 24 42 42 H 1.09004 * 109.48153 * 58.82355 * 26 25 24 43 43 H 1.09001 * 109.52337 * 297.70650 * 27 26 25 44 44 H 1.09006 * 109.52435 * 177.51454 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2749 -0.0006 6 1 3.9563 0.7808 0.8892 7 7 3.9816 2.6798 -0.0011 8 6 4.0790 3.3800 1.2041 9 6 3.7823 2.7496 2.4109 10 7 3.8682 3.3951 3.5588 11 6 4.2346 4.6564 3.6247 12 6 4.5517 5.3715 2.4546 13 6 4.9453 6.7282 2.5239 14 1 5.3667 7.1222 3.4369 15 6 4.7886 7.5600 1.4096 16 7 3.9888 7.2063 0.4365 17 14 5.7215 9.1754 1.3114 18 1 7.1814 8.9074 1.3567 19 1 5.3844 9.8652 0.0403 20 1 5.3406 10.0375 2.4590 21 6 4.4767 4.7082 1.2129 22 6 4.1129 0.5815 -1.2500 23 6 5.6429 0.6549 -1.2512 24 6 6.1818 -0.1082 -2.4639 25 8 5.7201 -1.4599 -2.4182 26 6 4.2978 -1.5923 -2.4624 27 6 3.6833 -0.8888 -1.2496 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 4.1890 3.1239 -0.8381 32 1 3.4757 1.7140 2.4066 33 1 4.2925 5.1475 4.5847 34 1 3.8804 7.7828 -0.3360 35 1 4.7173 5.2217 0.2938 36 1 3.7235 1.0749 -2.1407 37 1 5.9575 1.6971 -1.3073 38 1 6.0298 0.2055 -0.3366 39 1 7.2716 -0.0957 -2.4465 40 1 5.8272 0.3662 -3.3789 41 1 4.0304 -2.6489 -2.4438 42 1 3.9186 -1.1372 -3.3774 43 1 4.0306 -1.3694 -0.3350 44 1 2.5963 -0.9507 -1.3046 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167395307.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:00 Heat of formation + Delta-G solvation = -124.966776 kcal Electronic energy + Delta-G solvation = -27706.510206 eV Core-core repulsion = 23815.601036 eV Total energy + Delta-G solvation = -3890.909170 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.94419 -40.32433 -40.07680 -37.87855 -37.06811 -35.90023 -34.62811 -32.26013 -32.02193 -30.86121 -29.14004 -27.69974 -27.33221 -24.93631 -24.36420 -23.75265 -22.82800 -21.66719 -21.13691 -19.21351 -18.78150 -18.30652 -17.71243 -17.44691 -17.28883 -16.83977 -16.76541 -16.61016 -16.38326 -15.75731 -15.42264 -14.87479 -14.79030 -14.54588 -14.49017 -14.30246 -14.00846 -13.57461 -13.38818 -13.21840 -13.18413 -13.15440 -13.00909 -12.69171 -12.23980 -12.21614 -12.04466 -12.01507 -11.86279 -11.81274 -11.49959 -11.26906 -11.17593 -11.08437 -10.45551 -10.06269 -9.75742 -8.71913 -8.28525 -6.46609 0.88048 1.11178 1.13360 1.39560 1.50790 1.55368 1.68454 2.19377 2.47882 2.75085 3.02516 3.40804 3.64222 3.74977 3.78448 3.92978 4.06547 4.14719 4.25663 4.29593 4.31459 4.36108 4.38062 4.57727 4.59698 4.67413 4.68962 4.74421 4.82551 4.87067 4.92641 4.94565 5.13015 5.17368 5.23297 5.25326 5.32067 5.37359 5.61519 5.76310 5.97027 6.24204 6.31903 6.59814 6.66625 6.77870 6.80132 6.94003 7.75479 8.25876 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014060 B = 0.003771 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.013210 B = 7423.972892 C = 8342.980257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.348 6.348 3 C 0.438 3.562 4 O -0.531 6.531 5 C 0.179 3.821 6 H 0.116 0.884 7 N -0.716 5.716 8 C 0.191 3.809 9 C -0.107 4.107 10 N -0.454 5.454 11 C -0.076 4.076 12 C 0.072 3.928 13 C -0.481 4.481 14 H 0.086 0.914 15 C 0.038 3.962 16 N -0.814 5.814 17 Si 0.988 3.012 18 H -0.257 1.257 19 H -0.268 1.268 20 H -0.259 1.259 21 C -0.226 4.226 22 C -0.079 4.079 23 C -0.143 4.143 24 C 0.064 3.936 25 O -0.401 6.401 26 C 0.062 3.938 27 C -0.151 4.151 28 H 0.141 0.859 29 H 0.046 0.954 30 H 0.059 0.941 31 H 0.402 0.598 32 H 0.128 0.872 33 H 0.131 0.869 34 H 0.290 0.710 35 H 0.117 0.883 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.105 0.895 40 H 0.060 0.940 41 H 0.112 0.888 42 H 0.058 0.942 43 H 0.077 0.923 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.010 -14.890 -10.577 18.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.264 6.264 3 C 0.279 3.721 4 O -0.419 6.419 5 C 0.069 3.931 6 H 0.134 0.866 7 N -0.348 5.348 8 C 0.089 3.911 9 C -0.266 4.266 10 N -0.162 5.162 11 C -0.239 4.239 12 C 0.067 3.933 13 C -0.511 4.511 14 H 0.104 0.896 15 C -0.179 4.179 16 N -0.439 5.439 17 Si 0.808 3.192 18 H -0.181 1.181 19 H -0.192 1.192 20 H -0.183 1.183 21 C -0.257 4.257 22 C -0.098 4.098 23 C -0.181 4.181 24 C -0.013 4.013 25 O -0.320 6.320 26 C -0.014 4.014 27 C -0.189 4.189 28 H 0.159 0.841 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.238 0.762 32 H 0.145 0.855 33 H 0.148 0.852 34 H 0.101 0.899 35 H 0.135 0.865 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.123 0.877 40 H 0.078 0.922 41 H 0.130 0.870 42 H 0.076 0.924 43 H 0.096 0.904 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.482 -15.325 -9.975 18.292 hybrid contribution -0.301 2.038 -0.793 2.208 sum -0.783 -13.287 -10.768 17.120 Atomic orbital electron populations 1.23524 0.75813 1.05741 1.01843 1.86581 1.24186 1.32011 1.83593 1.25332 0.93658 0.81518 0.71606 1.90711 1.67636 1.37977 1.45535 1.20603 0.85099 0.84292 1.03067 0.86627 1.44052 1.75100 1.09869 1.05756 1.18547 0.94060 0.91593 0.86943 1.21474 1.18219 0.99775 0.87180 1.66786 1.09973 1.10239 1.29161 1.22470 1.12151 0.91468 0.97843 1.18596 0.88297 0.94429 0.91942 1.19840 1.37107 0.94266 0.99839 0.89581 1.26851 0.93459 1.03861 0.93698 1.69895 1.27132 1.39007 1.07874 0.85168 0.79303 0.75916 0.78844 1.18119 1.19236 1.18281 1.21047 1.13550 0.92009 0.99081 1.21324 0.96786 0.97000 0.94739 1.22169 0.93478 1.01888 1.00537 1.22635 1.00301 0.81993 0.96339 1.87916 1.22568 1.26690 1.94791 1.22706 0.80069 1.02187 0.96431 1.22398 1.03114 0.92619 1.00747 0.84144 0.93479 0.92229 0.76204 0.85462 0.85178 0.89910 0.86473 0.89896 0.90663 0.91093 0.87724 0.92162 0.86988 0.92392 0.90422 0.88309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 10.55 113.37 1.20 1.67 16 2 O -0.35 -8.53 7.55 -51.38 -0.39 -8.92 16 3 C 0.44 14.02 7.13 71.24 0.51 14.53 16 4 O -0.53 -22.18 16.11 21.96 0.35 -21.83 16 5 C 0.18 5.17 1.80 44.24 0.08 5.25 16 6 H 0.12 3.37 6.50 -2.39 -0.02 3.35 16 7 N -0.72 -26.00 4.14 -322.32 -1.33 -27.34 16 8 C 0.19 8.95 6.56 38.25 0.25 9.20 16 9 C -0.11 -5.17 10.34 84.94 0.88 -4.29 16 10 N -0.45 -23.86 10.33 -193.06 -1.99 -25.85 16 11 C -0.08 -4.07 10.97 85.36 0.94 -3.13 16 12 C 0.07 4.02 5.59 -21.21 -0.12 3.90 16 13 C -0.48 -25.71 9.08 23.47 0.21 -25.50 16 14 H 0.09 4.36 7.90 -2.91 -0.02 4.34 16 15 C 0.04 1.87 5.18 85.25 0.44 2.31 16 16 N -0.81 -42.04 10.92 21.82 0.24 -41.80 16 17 Si 0.99 37.06 29.59 68.60 2.03 39.09 16 18 H -0.26 -9.36 7.11 99.48 0.71 -8.66 16 19 H -0.27 -9.52 7.11 99.48 0.71 -8.81 16 20 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 21 C -0.23 -11.96 8.67 23.04 0.20 -11.76 16 22 C -0.08 -1.67 1.89 -10.68 -0.02 -1.69 16 23 C -0.14 -2.90 5.22 30.68 0.16 -2.74 16 24 C 0.06 1.10 6.84 72.01 0.49 1.60 16 25 O -0.40 -7.82 10.77 -148.98 -1.60 -9.42 16 26 C 0.06 0.94 6.84 72.01 0.49 1.43 16 27 C -0.15 -2.60 4.78 30.68 0.15 -2.45 16 28 H 0.14 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.05 1.09 8.13 -2.38 -0.02 1.07 16 30 H 0.06 1.19 8.13 -2.39 -0.02 1.17 16 31 H 0.40 13.76 8.44 -92.71 -0.78 12.98 16 32 H 0.13 5.50 6.19 -2.91 -0.02 5.48 16 33 H 0.13 6.57 8.06 -2.91 -0.02 6.54 16 34 H 0.29 13.52 8.30 -92.71 -0.77 12.75 16 35 H 0.12 6.29 6.20 -2.91 -0.02 6.28 16 36 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.07 1.65 7.58 -2.38 -0.02 1.63 16 38 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 39 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.06 0.91 8.14 -2.39 -0.02 0.90 16 41 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 43 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.10 1.64 5.56 -2.38 -0.01 1.63 16 Total: -1.00 -69.51 358.32 3.41 -66.10 By element: Atomic # 1 Polarization: 41.39 SS G_CDS: 0.25 Total: 41.64 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: 5.86 Total: -11.67 kcal Atomic # 7 Polarization: -91.90 SS G_CDS: -3.09 Total: -94.99 kcal Atomic # 8 Polarization: -38.53 SS G_CDS: -1.64 Total: -40.17 kcal Atomic # 14 Polarization: 37.06 SS G_CDS: 2.03 Total: 39.09 kcal Total: -69.51 3.41 -66.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167395307.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.863 kcal (2) G-P(sol) polarization free energy of solvation -69.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds