Wall clock time and date at job start Tue Mar 31 2020 12:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34232 * 117.00118 * 2 1 4 4 O 1.20827 * 119.99675 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00110 * 179.97438 * 3 2 1 6 6 H 1.09005 * 109.46837 * 60.00205 * 5 3 2 7 7 C 1.52999 * 109.47228 * 179.97438 * 5 3 2 8 8 C 1.53001 * 109.46934 * 180.02562 * 7 5 3 9 9 C 1.52997 * 109.47450 * 299.99984 * 8 7 5 10 10 H 1.09005 * 109.47328 * 300.00764 * 9 8 7 11 11 N 1.46500 * 109.47419 * 179.97438 * 9 8 7 12 12 C 1.39124 * 120.00100 * 154.99912 * 11 9 8 13 13 C 1.39162 * 119.63113 * 0.02562 * 12 11 9 14 14 C 1.38212 * 119.17279 * 179.97438 * 13 12 11 15 15 C 1.39450 * 118.44856 * 359.97438 * 14 13 12 16 16 O 1.35808 * 120.40482 * 179.97438 * 15 14 13 17 17 C 1.34815 * 116.99999 * 354.52172 * 16 15 14 18 18 H 1.07996 * 119.99951 * 5.05366 * 17 16 15 19 19 C 1.38634 * 119.99717 * 185.05708 * 17 16 15 20 20 N 1.31576 * 119.99357 * 179.97438 * 19 17 16 21 21 Si 1.86793 * 120.00171 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47239 * 90.00227 * 21 19 17 23 23 H 1.48502 * 109.47118 * 209.99867 * 21 19 17 24 24 H 1.48503 * 109.47036 * 330.00009 * 21 19 17 25 25 C 1.38666 * 119.18927 * 359.97438 * 15 14 13 26 26 N 1.31932 * 120.76158 * 359.74466 * 25 15 14 27 27 C 1.53003 * 109.46859 * 60.00403 * 9 8 7 28 28 C 1.53003 * 109.47263 * 300.00634 * 5 3 2 29 29 H 1.08995 * 109.47254 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46630 * 300.00151 * 1 2 3 31 31 H 1.09001 * 109.46990 * 59.99208 * 1 2 3 32 32 H 1.09005 * 109.46959 * 60.00384 * 7 5 3 33 33 H 1.08992 * 109.47316 * 300.00114 * 7 5 3 34 34 H 1.09006 * 109.46932 * 180.02562 * 8 7 5 35 35 H 1.08995 * 109.47029 * 60.00369 * 8 7 5 36 36 H 0.97001 * 119.99868 * 335.00653 * 11 9 8 37 37 H 1.08003 * 120.41442 * 359.95129 * 13 12 11 38 38 H 1.07997 * 120.77638 * 179.97438 * 14 13 12 39 39 H 0.97005 * 119.99764 * 180.02562 * 20 19 17 40 40 H 1.08003 * 119.61888 * 179.97438 * 25 15 14 41 41 H 1.08995 * 109.47315 * 59.99802 * 27 9 8 42 42 H 1.09001 * 109.47223 * 180.02562 * 27 9 8 43 43 H 1.09005 * 109.46844 * 299.99567 * 28 5 3 44 44 H 1.08995 * 109.47506 * 59.99622 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2749 0.0006 6 1 3.9564 0.7806 -0.8892 7 6 4.0002 2.7421 -0.0002 8 6 5.5281 2.8221 -0.0002 9 6 6.0752 2.1292 1.2493 10 1 5.6854 2.6237 2.1391 11 7 7.5382 2.2052 1.2489 12 6 8.2386 2.1373 2.4491 13 6 7.5418 1.9966 3.6454 14 6 8.2471 1.9296 4.8321 15 6 9.6387 2.0056 4.7830 16 8 10.3711 1.9444 5.9250 17 6 9.6903 1.9237 7.0884 18 1 8.6116 1.8729 7.0819 19 6 10.3750 1.9677 8.2930 20 7 9.7105 1.9479 9.4284 21 14 12.2408 2.0563 8.3041 22 1 12.6689 3.4782 8.2939 23 1 12.7607 1.3918 9.5262 24 1 12.7762 1.3694 7.1013 25 6 10.2654 2.1445 3.5538 26 7 9.5610 2.1997 2.4396 27 6 5.6414 0.6619 1.2500 28 6 4.1130 0.5814 1.2501 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 3.6101 3.2367 0.8894 33 1 3.6109 3.2356 -0.8906 34 1 5.8372 3.8674 -0.0003 35 1 5.9178 2.3275 -0.8900 36 1 8.0186 2.3030 0.4119 37 1 6.4632 1.9408 3.6466 38 1 7.7326 1.8208 5.7754 39 1 10.1895 1.9791 10.2714 40 1 11.3428 2.2045 3.5077 41 1 6.0311 0.1674 0.3603 42 1 6.0308 0.1683 2.1404 43 1 3.7229 1.0757 2.1399 44 1 3.8039 -0.4638 1.2502 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167827201.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:56 Heat of formation + Delta-G solvation = -82.983097 kcal Electronic energy + Delta-G solvation = -26236.867691 eV Core-core repulsion = 22347.779070 eV Total energy + Delta-G solvation = -3889.088621 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.05693 -39.85725 -38.75706 -37.31568 -36.73380 -34.51826 -32.36308 -31.42930 -31.14642 -30.46665 -28.33262 -27.45155 -25.12637 -23.92132 -23.19876 -22.68285 -21.48269 -20.74853 -20.12046 -18.17294 -17.87362 -17.45564 -17.10817 -16.74590 -16.38574 -16.21281 -15.08950 -14.73156 -14.57853 -14.34570 -14.27735 -14.10310 -13.81793 -13.34878 -13.22483 -13.12578 -12.85421 -12.60597 -12.51675 -12.42423 -12.30650 -12.20654 -11.81138 -11.60471 -11.49543 -11.38063 -11.16303 -10.96024 -10.79599 -10.65100 -10.47306 -10.27659 -9.63673 -9.38812 -9.04042 -8.84721 -8.63668 -6.78606 -6.40035 -4.04808 1.85936 1.93695 2.30472 2.35692 3.23566 3.27543 3.41808 3.45621 4.21153 4.25387 4.32269 4.38649 4.57612 4.72931 4.73146 4.81387 4.86360 4.88693 4.91196 5.04969 5.10072 5.11733 5.16186 5.16733 5.30599 5.39240 5.49745 5.66809 5.69904 5.73538 5.82468 5.84451 5.86093 5.86969 6.02553 6.07242 6.16352 6.41747 6.68965 7.02131 7.04778 7.39764 7.56443 7.69320 7.97703 8.08541 8.80434 8.95539 9.57347 10.68005 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022527 B = 0.002338 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.677923 B =11974.252042 C =12815.856643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.465 3.535 4 O -0.507 6.507 5 C -0.080 4.080 6 H 0.110 0.890 7 C -0.100 4.100 8 C -0.123 4.123 9 C 0.161 3.839 10 H 0.079 0.921 11 N -0.734 5.734 12 C 0.320 3.680 13 C -0.187 4.187 14 C -0.141 4.141 15 C 0.068 3.932 16 O -0.218 6.218 17 C -0.388 4.388 18 H 0.103 0.897 19 C 0.062 3.938 20 N -0.883 5.883 21 Si 0.906 3.094 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.259 1.259 25 C 0.069 3.931 26 N -0.504 5.504 27 C -0.135 4.135 28 C -0.109 4.109 29 H 0.101 0.899 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.396 0.604 37 H 0.120 0.880 38 H 0.142 0.858 39 H 0.279 0.721 40 H 0.151 0.849 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.492 -3.024 -20.056 24.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.275 6.275 3 C 0.307 3.693 4 O -0.394 6.394 5 C -0.099 4.099 6 H 0.128 0.872 7 C -0.138 4.138 8 C -0.161 4.161 9 C 0.054 3.946 10 H 0.097 0.903 11 N -0.371 5.371 12 C 0.087 3.913 13 C -0.211 4.211 14 C -0.168 4.168 15 C 0.014 3.986 16 O -0.123 6.123 17 C -0.464 4.464 18 H 0.120 0.880 19 C -0.141 4.141 20 N -0.521 5.521 21 Si 0.732 3.268 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.183 1.183 25 C -0.090 4.090 26 N -0.221 5.221 27 C -0.174 4.174 28 C -0.147 4.147 29 H 0.120 0.880 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.230 0.770 37 H 0.138 0.862 38 H 0.159 0.841 39 H 0.089 0.911 40 H 0.168 0.832 41 H 0.088 0.912 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.186 -2.664 -20.448 25.029 hybrid contribution -0.001 -0.021 0.767 0.768 sum -14.187 -2.685 -19.681 24.409 Atomic orbital electron populations 1.23278 0.76368 1.03753 1.02559 1.86522 1.23409 1.33566 1.83981 1.23922 0.92161 0.81255 0.71919 1.90672 1.67250 1.36392 1.45114 1.21195 0.86473 0.99766 1.02447 0.87175 1.21399 0.95143 0.93145 1.04079 1.21781 0.94589 1.01777 0.98002 1.20806 0.80290 0.94859 0.98649 0.90277 1.44009 1.03872 1.83822 1.05443 1.17960 0.88073 0.99227 0.86026 1.21177 0.99752 1.08629 0.91538 1.21532 0.93877 1.02583 0.98775 1.19981 0.90818 0.99347 0.88491 1.83581 1.34658 1.82062 1.11951 1.20687 0.93290 1.52065 0.80333 0.88008 1.24441 1.00317 0.95807 0.93533 1.69658 1.36669 1.48451 0.97336 0.86168 0.83562 0.78957 0.78144 1.19931 1.20890 1.18278 1.21437 0.99134 1.03573 0.84829 1.66944 1.06194 1.18584 1.30354 1.22102 0.93881 0.97846 1.03572 1.21538 0.96206 1.01198 0.95768 0.88048 0.91822 0.91954 0.90524 0.90594 0.90448 0.91122 0.76958 0.86244 0.84091 0.91122 0.83219 0.91228 0.90510 0.91051 0.90221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 101.05 1.07 1.28 16 2 O -0.36 -3.11 10.47 -39.26 -0.41 -3.53 16 3 C 0.46 4.42 7.26 36.00 0.26 4.68 16 4 O -0.51 -6.17 15.73 -18.75 -0.29 -6.46 16 5 C -0.08 -0.60 2.63 -91.77 -0.24 -0.84 16 6 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 7 C -0.10 -0.77 4.49 -26.73 -0.12 -0.89 16 8 C -0.12 -0.95 5.39 -26.73 -0.14 -1.09 16 9 C 0.16 1.60 2.14 -67.93 -0.15 1.45 16 10 H 0.08 0.87 6.45 -51.93 -0.33 0.54 16 11 N -0.73 -9.39 5.25 -53.89 -0.28 -9.68 16 12 C 0.32 5.46 7.63 -154.90 -1.18 4.28 16 13 C -0.19 -3.28 8.83 -39.25 -0.35 -3.63 16 14 C -0.14 -2.94 9.25 -39.14 -0.36 -3.30 16 15 C 0.07 1.54 6.66 -38.97 -0.26 1.28 16 16 O -0.22 -5.63 8.59 -0.09 0.00 -5.63 16 17 C -0.39 -10.75 9.96 30.88 0.31 -10.45 16 18 H 0.10 2.87 5.49 -52.49 -0.29 2.58 16 19 C 0.06 1.72 5.49 -17.52 -0.10 1.62 16 20 N -0.88 -25.35 13.96 55.48 0.77 -24.57 16 21 Si 0.91 21.52 28.62 -169.99 -4.86 16.65 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.26 -6.13 7.11 56.52 0.40 -5.73 16 25 C 0.07 1.39 11.14 -17.35 -0.19 1.20 16 26 N -0.50 -9.57 10.39 -12.25 -0.13 -9.69 16 27 C -0.13 -1.22 5.42 -26.70 -0.14 -1.37 16 28 C -0.11 -0.85 5.14 -26.70 -0.14 -0.99 16 29 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 31 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 32 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 33 H 0.08 0.58 8.10 -51.93 -0.42 0.16 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.40 4.66 8.73 -40.82 -0.36 4.31 16 37 H 0.12 1.78 6.06 -52.48 -0.32 1.46 16 38 H 0.14 3.04 5.76 -52.49 -0.30 2.74 16 39 H 0.28 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.15 2.76 8.06 -52.48 -0.42 2.34 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.08 0.84 7.65 -51.93 -0.40 0.44 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.08 0.59 8.11 -51.93 -0.42 0.16 16 LS Contribution 362.24 15.07 5.46 5.46 Total: -1.00 -31.61 362.24 -7.68 -39.29 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -6.20 Total: 4.92 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -1.74 Total: -6.76 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: 0.36 Total: -43.94 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.71 Total: -15.62 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.86 Total: 16.65 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.61 -7.68 -39.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167827201.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.691 kcal (2) G-P(sol) polarization free energy of solvation -31.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds