Wall clock time and date at job start Tue Mar 31 2020 12:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34232 * 117.00118 * 2 1 4 4 O 1.20827 * 119.99675 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00110 * 179.97438 * 3 2 1 6 6 H 1.09005 * 109.46837 * 60.00205 * 5 3 2 7 7 C 1.52999 * 109.47228 * 179.97438 * 5 3 2 8 8 C 1.53001 * 109.46934 * 180.02562 * 7 5 3 9 9 C 1.52997 * 109.47450 * 299.99984 * 8 7 5 10 10 H 1.09005 * 109.47328 * 300.00764 * 9 8 7 11 11 N 1.46500 * 109.47419 * 179.97438 * 9 8 7 12 12 C 1.39124 * 120.00100 * 154.99912 * 11 9 8 13 13 C 1.39162 * 119.63113 * 0.02562 * 12 11 9 14 14 C 1.38212 * 119.17279 * 179.97438 * 13 12 11 15 15 C 1.39450 * 118.44856 * 359.97438 * 14 13 12 16 16 O 1.35808 * 120.40482 * 179.97438 * 15 14 13 17 17 C 1.34815 * 116.99999 * 354.52172 * 16 15 14 18 18 H 1.07996 * 119.99951 * 5.05366 * 17 16 15 19 19 C 1.38634 * 119.99717 * 185.05708 * 17 16 15 20 20 N 1.31576 * 119.99357 * 179.97438 * 19 17 16 21 21 Si 1.86793 * 120.00171 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47239 * 90.00227 * 21 19 17 23 23 H 1.48502 * 109.47118 * 209.99867 * 21 19 17 24 24 H 1.48503 * 109.47036 * 330.00009 * 21 19 17 25 25 C 1.38666 * 119.18927 * 359.97438 * 15 14 13 26 26 N 1.31932 * 120.76158 * 359.74466 * 25 15 14 27 27 C 1.53003 * 109.46859 * 60.00403 * 9 8 7 28 28 C 1.53003 * 109.47263 * 300.00634 * 5 3 2 29 29 H 1.08995 * 109.47254 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46630 * 300.00151 * 1 2 3 31 31 H 1.09001 * 109.46990 * 59.99208 * 1 2 3 32 32 H 1.09005 * 109.46959 * 60.00384 * 7 5 3 33 33 H 1.08992 * 109.47316 * 300.00114 * 7 5 3 34 34 H 1.09006 * 109.46932 * 180.02562 * 8 7 5 35 35 H 1.08995 * 109.47029 * 60.00369 * 8 7 5 36 36 H 0.97001 * 119.99868 * 335.00653 * 11 9 8 37 37 H 1.08003 * 120.41442 * 359.95129 * 13 12 11 38 38 H 1.07997 * 120.77638 * 179.97438 * 14 13 12 39 39 H 0.97005 * 119.99764 * 180.02562 * 20 19 17 40 40 H 1.08003 * 119.61888 * 179.97438 * 25 15 14 41 41 H 1.08995 * 109.47315 * 59.99802 * 27 9 8 42 42 H 1.09001 * 109.47223 * 180.02562 * 27 9 8 43 43 H 1.09005 * 109.46844 * 299.99567 * 28 5 3 44 44 H 1.08995 * 109.47506 * 59.99622 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2749 0.0006 6 1 3.9564 0.7806 -0.8892 7 6 4.0002 2.7421 -0.0002 8 6 5.5281 2.8221 -0.0002 9 6 6.0752 2.1292 1.2493 10 1 5.6854 2.6237 2.1391 11 7 7.5382 2.2052 1.2489 12 6 8.2386 2.1373 2.4491 13 6 7.5418 1.9966 3.6454 14 6 8.2471 1.9296 4.8321 15 6 9.6387 2.0056 4.7830 16 8 10.3711 1.9444 5.9250 17 6 9.6903 1.9237 7.0884 18 1 8.6116 1.8729 7.0819 19 6 10.3750 1.9677 8.2930 20 7 9.7105 1.9479 9.4284 21 14 12.2408 2.0563 8.3041 22 1 12.6689 3.4782 8.2939 23 1 12.7607 1.3918 9.5262 24 1 12.7762 1.3694 7.1013 25 6 10.2654 2.1445 3.5538 26 7 9.5610 2.1997 2.4396 27 6 5.6414 0.6619 1.2500 28 6 4.1130 0.5814 1.2501 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 3.6101 3.2367 0.8894 33 1 3.6109 3.2356 -0.8906 34 1 5.8372 3.8674 -0.0003 35 1 5.9178 2.3275 -0.8900 36 1 8.0186 2.3030 0.4119 37 1 6.4632 1.9408 3.6466 38 1 7.7326 1.8208 5.7754 39 1 10.1895 1.9791 10.2714 40 1 11.3428 2.2045 3.5077 41 1 6.0311 0.1674 0.3603 42 1 6.0308 0.1683 2.1404 43 1 3.7229 1.0757 2.1399 44 1 3.8039 -0.4638 1.2502 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167827201.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:55 Heat of formation + Delta-G solvation = -101.935755 kcal Electronic energy + Delta-G solvation = -26237.689540 eV Core-core repulsion = 22347.779070 eV Total energy + Delta-G solvation = -3889.910470 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.79591 -41.34320 -39.81420 -38.80075 -37.52372 -35.64534 -34.37242 -32.97245 -31.92013 -31.45562 -29.48154 -28.33535 -26.95267 -25.04094 -24.31915 -23.59647 -22.82716 -21.68183 -20.87069 -19.97151 -19.15885 -18.59474 -17.88293 -17.84886 -17.58793 -17.35921 -16.32956 -16.08383 -15.91426 -15.72714 -15.32422 -14.97060 -14.87845 -14.65796 -14.42574 -14.38447 -14.07304 -13.93919 -13.87108 -13.56495 -13.36060 -13.19419 -12.93607 -12.75436 -12.47698 -12.29790 -12.11936 -12.05580 -11.81032 -11.62082 -11.56209 -11.42201 -11.23069 -10.98356 -10.59325 -10.43036 -10.33494 -8.45520 -8.27941 -6.14297 0.35466 0.69534 1.13806 1.35980 1.39809 1.56632 1.75386 2.28574 2.32554 2.84508 3.11396 3.21777 3.55772 3.64168 3.74505 3.82305 4.01919 4.08952 4.16705 4.19552 4.26388 4.29887 4.31906 4.34587 4.39884 4.42939 4.50720 4.69657 4.74345 4.83952 4.89149 4.95664 5.08156 5.11215 5.16397 5.18683 5.33028 5.36506 5.39356 5.43480 5.48930 5.68729 6.02381 6.28103 6.69885 6.79275 6.89306 7.32839 7.64481 8.66240 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022527 B = 0.002338 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.677923 B =11974.252042 C =12815.856643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.465 3.535 4 O -0.539 6.539 5 C -0.075 4.075 6 H 0.135 0.865 7 C -0.095 4.095 8 C -0.112 4.112 9 C 0.154 3.846 10 H 0.070 0.930 11 N -0.717 5.717 12 C 0.341 3.659 13 C -0.186 4.186 14 C -0.143 4.143 15 C 0.025 3.975 16 O -0.242 6.242 17 C -0.394 4.394 18 H 0.080 0.920 19 C 0.008 3.992 20 N -0.926 5.926 21 Si 0.970 3.030 22 H -0.267 1.267 23 H -0.271 1.271 24 H -0.260 1.260 25 C 0.080 3.920 26 N -0.513 5.513 27 C -0.128 4.128 28 C -0.103 4.103 29 H 0.129 0.871 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.406 0.594 37 H 0.147 0.853 38 H 0.125 0.875 39 H 0.283 0.717 40 H 0.167 0.833 41 H 0.083 0.917 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.659 -3.451 -23.134 27.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.309 3.691 4 O -0.429 6.429 5 C -0.094 4.094 6 H 0.153 0.847 7 C -0.134 4.134 8 C -0.150 4.150 9 C 0.048 3.952 10 H 0.088 0.912 11 N -0.353 5.353 12 C 0.106 3.894 13 C -0.210 4.210 14 C -0.170 4.170 15 C -0.027 4.027 16 O -0.149 6.149 17 C -0.471 4.471 18 H 0.098 0.902 19 C -0.190 4.190 20 N -0.568 5.568 21 Si 0.792 3.208 22 H -0.193 1.193 23 H -0.196 1.196 24 H -0.184 1.184 25 C -0.077 4.077 26 N -0.231 5.231 27 C -0.167 4.167 28 C -0.141 4.141 29 H 0.147 0.853 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.110 0.890 36 H 0.243 0.757 37 H 0.165 0.835 38 H 0.143 0.857 39 H 0.093 0.907 40 H 0.184 0.816 41 H 0.102 0.898 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.393 -3.102 -23.603 27.819 hybrid contribution -0.242 0.100 1.375 1.400 sum -14.636 -3.002 -22.228 26.782 Atomic orbital electron populations 1.23522 0.75149 1.05578 1.02383 1.86516 1.24707 1.33100 1.83565 1.24290 0.92858 0.80997 0.70918 1.90663 1.68078 1.37405 1.46744 1.21234 0.85217 0.99725 1.03180 0.84743 1.21343 0.95006 0.93319 1.03692 1.21695 0.94282 1.01719 0.97321 1.21066 0.78333 0.95978 0.99793 0.91184 1.44201 1.05051 1.81744 1.04321 1.18307 0.87820 0.95923 0.87388 1.21374 1.01079 1.08000 0.90566 1.21578 0.93682 1.02327 0.99443 1.20368 0.91680 1.02215 0.88427 1.83520 1.34796 1.84612 1.11942 1.20654 0.92682 1.52048 0.81680 0.90231 1.25241 1.04877 0.95798 0.93100 1.69742 1.38402 1.50686 0.97965 0.85221 0.78061 0.79190 0.78317 1.19251 1.19564 1.18366 1.21707 1.00104 1.01754 0.84162 1.67110 1.06880 1.19711 1.29395 1.22002 0.94640 0.96668 1.03378 1.21463 0.95173 1.01733 0.95705 0.85287 0.92348 0.91849 0.91943 0.90104 0.90397 0.89030 0.75730 0.83509 0.85745 0.90734 0.81629 0.89803 0.92341 0.91854 0.89373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 113.37 1.20 1.49 16 2 O -0.36 -5.59 10.47 -51.44 -0.54 -6.13 16 3 C 0.46 8.01 7.26 71.24 0.52 8.53 16 4 O -0.54 -12.57 15.73 21.96 0.35 -12.22 16 5 C -0.07 -0.91 2.63 -11.54 -0.03 -0.94 16 6 H 0.13 1.04 8.14 -2.38 -0.02 1.02 16 7 C -0.10 -1.23 4.49 30.59 0.14 -1.09 16 8 C -0.11 -1.32 5.39 30.59 0.16 -1.16 16 9 C 0.15 2.59 2.14 44.99 0.10 2.69 16 10 H 0.07 1.36 6.45 -2.38 -0.02 1.35 16 11 N -0.72 -15.96 5.25 -324.41 -1.70 -17.66 16 12 C 0.34 10.87 7.63 133.03 1.02 11.89 16 13 C -0.19 -6.32 8.83 22.49 0.20 -6.12 16 14 C -0.14 -6.11 9.25 22.56 0.21 -5.90 16 15 C 0.03 1.15 6.66 22.66 0.15 1.30 16 16 O -0.24 -12.86 8.59 -23.23 -0.20 -13.06 16 17 C -0.39 -22.81 9.96 67.91 0.68 -22.14 16 18 H 0.08 4.79 5.49 -2.91 -0.02 4.77 16 19 C 0.01 0.44 5.49 84.83 0.47 0.91 16 20 N -0.93 -55.08 13.96 21.61 0.30 -54.78 16 21 Si 0.97 45.13 28.62 68.60 1.96 47.09 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 24 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 25 C 0.08 3.18 11.14 84.78 0.94 4.13 16 26 N -0.51 -18.44 10.39 -192.67 -2.00 -20.44 16 27 C -0.13 -1.93 5.42 30.61 0.17 -1.77 16 28 C -0.10 -1.34 5.14 30.61 0.16 -1.18 16 29 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.06 0.70 8.13 -2.39 -0.02 0.68 16 31 H 0.06 0.68 8.13 -2.39 -0.02 0.66 16 32 H 0.06 1.00 8.10 -2.38 -0.02 0.98 16 33 H 0.08 1.02 8.10 -2.39 -0.02 1.00 16 34 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 35 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.41 7.92 8.73 -92.71 -0.81 7.11 16 37 H 0.15 4.13 6.06 -2.91 -0.02 4.11 16 38 H 0.12 5.68 5.76 -2.91 -0.02 5.67 16 39 H 0.28 15.49 8.31 -92.70 -0.77 14.72 16 40 H 0.17 5.92 8.06 -2.91 -0.02 5.90 16 41 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.06 1.14 7.65 -2.39 -0.02 1.12 16 43 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 44 H 0.09 1.05 8.11 -2.39 -0.02 1.03 16 Total: -1.00 -70.32 362.24 4.45 -65.86 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: 0.22 Total: 20.70 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: 6.06 Total: -9.36 kcal Atomic # 7 Polarization: -89.48 SS G_CDS: -3.40 Total: -92.88 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -0.39 Total: -31.41 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.96 Total: 47.09 kcal Total: -70.32 4.45 -65.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167827201.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.071 kcal (2) G-P(sol) polarization free energy of solvation -70.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds