Wall clock time and date at job start Tue Mar 31 2020 12:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34234 * 116.99622 * 2 1 4 4 O 1.20820 * 120.00068 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99462 * 179.97438 * 3 2 1 6 6 H 1.09008 * 109.46977 * 60.00791 * 5 3 2 7 7 C 1.52997 * 109.47721 * 300.00641 * 5 3 2 8 8 C 1.50701 * 109.47212 * 174.99887 * 7 5 3 9 9 C 1.38233 * 120.00099 * 269.72808 * 8 7 5 10 10 C 1.38239 * 119.99655 * 179.76882 * 9 8 7 11 11 C 1.38230 * 120.00228 * 0.50243 * 10 9 8 12 12 C 1.38238 * 119.99995 * 359.75228 * 11 10 9 13 13 C 1.38238 * 120.00072 * 359.97438 * 12 11 10 14 14 N 1.46504 * 109.46820 * 180.02562 * 5 3 2 15 15 C 1.34776 * 120.00219 * 275.00554 * 14 5 3 16 16 O 1.21583 * 120.00057 * 359.97438 * 15 14 5 17 17 N 1.34781 * 119.99891 * 180.02562 * 15 14 5 18 18 C 1.46493 * 119.99865 * 179.97438 * 17 15 14 19 19 C 1.53002 * 109.46962 * 179.97438 * 18 17 15 20 20 C 1.50705 * 109.47043 * 180.02562 * 19 18 17 21 21 H 1.08004 * 120.00102 * 359.97438 * 20 19 18 22 22 C 1.37880 * 119.99983 * 180.02562 * 20 19 18 23 23 N 1.31509 * 119.99721 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99890 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46871 * 89.99931 * 24 22 20 26 26 H 1.48495 * 109.46904 * 209.99973 * 24 22 20 27 27 H 1.48493 * 109.47160 * 330.00198 * 24 22 20 28 28 H 1.08997 * 109.47490 * 59.99353 * 1 2 3 29 29 H 1.08996 * 109.47364 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47049 * 299.99593 * 1 2 3 31 31 H 1.09002 * 109.47153 * 54.99889 * 7 5 3 32 32 H 1.09001 * 109.46832 * 295.00079 * 7 5 3 33 33 H 1.08003 * 119.99927 * 359.97438 * 9 8 7 34 34 H 1.08000 * 119.99431 * 180.23215 * 10 9 8 35 35 H 1.07997 * 120.00220 * 179.73036 * 11 10 9 36 36 H 1.08002 * 119.99952 * 179.97438 * 12 11 10 37 37 H 1.07991 * 120.00062 * 179.97438 * 13 12 11 38 38 H 0.97006 * 119.99491 * 95.00623 * 14 5 3 39 39 H 0.97001 * 120.00009 * 359.97438 * 17 15 14 40 40 H 1.09001 * 109.47322 * 299.99611 * 18 17 15 41 41 H 1.09007 * 109.47484 * 59.99542 * 18 17 15 42 42 H 1.08996 * 109.46997 * 299.99369 * 19 18 17 43 43 H 1.08997 * 109.47159 * 60.00232 * 19 18 17 44 44 H 0.97008 * 119.99350 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2749 0.0006 6 1 3.9563 0.7807 -0.8893 7 6 4.1129 0.5815 1.2500 8 6 5.6185 0.5521 1.1901 9 6 6.2660 -0.5180 0.6016 10 6 7.6469 -0.5426 0.5425 11 6 8.3805 0.4978 1.0810 12 6 7.7330 1.5655 1.6743 13 6 6.3520 1.5929 1.7285 14 7 3.9816 2.6798 0.0011 15 6 4.0754 3.3553 -1.1614 16 8 3.8158 2.7985 -2.2107 17 7 4.4581 4.6476 -1.1609 18 6 4.5606 5.3816 -2.4246 19 6 5.0102 6.8172 -2.1454 20 6 5.1151 7.5724 -3.4453 21 1 4.8846 7.0779 -4.3774 22 6 5.5064 8.8945 -3.4448 23 7 5.7886 9.4963 -2.3100 24 14 5.6371 9.8305 -5.0562 25 1 4.3342 10.4743 -5.3617 26 1 6.6888 10.8723 -4.9395 27 1 5.9921 8.8889 -6.1482 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 3.7312 -0.4385 1.2959 32 1 3.7952 1.1287 2.1376 33 1 5.6930 -1.3333 0.1851 34 1 8.1527 -1.3769 0.0793 35 1 9.4594 0.4765 1.0387 36 1 8.3062 2.3782 2.0955 37 1 5.8462 2.4267 2.1923 38 1 4.1891 3.1239 0.8382 39 1 4.6655 5.0917 -0.3239 40 1 5.2886 4.8917 -3.0713 41 1 3.5882 5.3950 -2.9170 42 1 4.2819 7.3068 -1.4990 43 1 5.9825 6.8041 -1.6530 44 1 6.0636 10.4266 -2.3097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189853482.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:03 Heat of formation + Delta-G solvation = -99.438054 kcal Electronic energy + Delta-G solvation = -26516.972139 eV Core-core repulsion = 22627.169977 eV Total energy + Delta-G solvation = -3889.802162 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.92388 -39.59936 -39.18946 -36.69202 -35.68659 -34.66231 -32.94719 -32.39439 -31.07072 -30.10356 -28.96030 -27.61195 -25.09567 -24.36493 -22.80461 -21.67155 -21.31461 -20.73945 -20.47606 -18.25730 -17.74250 -17.26274 -16.89838 -16.43864 -16.27322 -15.84936 -15.30902 -15.18091 -14.87806 -14.50307 -14.13372 -13.95453 -13.86904 -13.59923 -13.41723 -13.16746 -13.01985 -12.90120 -12.47520 -12.26272 -12.17959 -11.84732 -11.37009 -11.18833 -11.15758 -11.01860 -10.93491 -10.66470 -10.60785 -10.28348 -9.97766 -9.54071 -9.26059 -9.23024 -9.06936 -8.90926 -8.47009 -8.25003 -6.06380 -4.08686 1.12181 1.23587 2.11713 2.35434 3.01660 3.31939 3.37820 3.42588 3.57522 3.65608 4.32016 4.41805 4.50438 4.54878 4.67182 4.82038 4.84952 4.89824 4.93059 4.96887 5.01357 5.22600 5.30836 5.31017 5.34593 5.42087 5.51551 5.81273 5.85361 6.19290 6.27432 6.29883 6.32970 6.36611 6.41722 6.43707 6.81052 6.81511 7.01559 7.15946 7.59412 7.64753 7.67108 7.92945 8.27788 8.41122 8.93786 8.99208 9.55802 11.05334 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010900 B = 0.003150 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.157834 B = 8886.795924 C =10839.152612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.361 6.361 3 C 0.445 3.555 4 O -0.489 6.489 5 C 0.187 3.813 6 H 0.129 0.871 7 C -0.082 4.082 8 C -0.084 4.084 9 C -0.112 4.112 10 C -0.119 4.119 11 C -0.120 4.120 12 C -0.116 4.116 13 C -0.108 4.108 14 N -0.729 5.729 15 C 0.707 3.293 16 O -0.595 6.595 17 N -0.733 5.733 18 C 0.141 3.859 19 C 0.013 3.987 20 C -0.520 4.520 21 H 0.059 0.941 22 C 0.059 3.941 23 N -0.895 5.895 24 Si 0.897 3.103 25 H -0.280 1.280 26 H -0.286 1.286 27 H -0.272 1.272 28 H 0.063 0.937 29 H 0.100 0.900 30 H 0.061 0.939 31 H 0.103 0.897 32 H 0.085 0.915 33 H 0.124 0.876 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.120 0.880 38 H 0.399 0.601 39 H 0.394 0.606 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.022 0.978 43 H 0.022 0.978 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.395 -23.160 13.052 26.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.277 6.277 3 C 0.284 3.716 4 O -0.374 6.374 5 C 0.078 3.922 6 H 0.146 0.854 7 C -0.119 4.119 8 C -0.084 4.084 9 C -0.130 4.130 10 C -0.137 4.137 11 C -0.138 4.138 12 C -0.134 4.134 13 C -0.126 4.126 14 N -0.386 5.386 15 C 0.407 3.593 16 O -0.473 6.473 17 N -0.386 5.386 18 C 0.018 3.982 19 C -0.024 4.024 20 C -0.559 4.559 21 H 0.078 0.922 22 C -0.143 4.143 23 N -0.534 5.534 24 Si 0.724 3.276 25 H -0.206 1.206 26 H -0.212 1.212 27 H -0.197 1.197 28 H 0.081 0.919 29 H 0.119 0.881 30 H 0.080 0.920 31 H 0.122 0.878 32 H 0.103 0.897 33 H 0.142 0.858 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.141 0.859 37 H 0.138 0.862 38 H 0.234 0.766 39 H 0.227 0.773 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.040 0.960 43 H 0.041 0.959 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.808 -23.153 12.101 26.187 hybrid contribution 0.001 1.217 -0.086 1.220 sum -1.807 -21.936 12.015 25.076 Atomic orbital electron populations 1.23249 0.76462 1.03509 1.02632 1.86483 1.23363 1.33505 1.84382 1.24560 0.92698 0.81628 0.72727 1.90697 1.66627 1.36356 1.43670 1.20154 0.85897 0.83968 1.02230 0.85394 1.20835 0.92333 1.02592 0.96179 1.19590 0.94210 0.95199 0.99375 1.21055 0.94649 0.98140 0.99167 1.21141 0.94081 0.98812 0.99649 1.21188 0.99990 0.94332 0.98314 1.21175 0.94552 0.98326 0.99328 1.21024 0.94142 0.97732 0.99681 1.44814 1.73824 1.11034 1.08881 1.15952 0.77926 0.82002 0.83402 1.90887 1.57343 1.68695 1.30418 1.45458 1.71753 1.09499 1.11851 1.21611 1.00553 0.93534 0.82513 1.19323 0.96893 0.88173 0.98030 1.21055 1.45996 0.95969 0.92832 0.92233 1.24991 0.95151 0.97640 0.96516 1.69960 1.46099 1.11880 1.25419 0.86512 0.77788 0.79564 0.83692 1.20577 1.21199 1.19711 0.91858 0.88129 0.92010 0.87840 0.89676 0.85816 0.86068 0.86160 0.85898 0.86185 0.76614 0.77336 0.92720 0.92769 0.95951 0.95939 0.92897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.56 101.05 1.07 1.37 16 2 O -0.36 -3.96 10.37 -39.27 -0.41 -4.36 16 3 C 0.44 5.93 7.29 36.00 0.26 6.19 16 4 O -0.49 -8.29 16.07 -18.75 -0.30 -8.59 16 5 C 0.19 2.17 2.47 -69.08 -0.17 2.00 16 6 H 0.13 1.63 7.58 -51.92 -0.39 1.24 16 7 C -0.08 -0.64 4.85 -27.88 -0.14 -0.77 16 8 C -0.08 -0.74 4.95 -104.62 -0.52 -1.26 16 9 C -0.11 -0.98 9.70 -39.58 -0.38 -1.36 16 10 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 11 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 12 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 13 C -0.11 -0.98 9.10 -39.58 -0.36 -1.34 16 14 N -0.73 -9.71 4.06 -59.81 -0.24 -9.95 16 15 C 0.71 12.96 8.40 -86.92 -0.73 12.23 16 16 O -0.59 -13.22 16.01 5.29 0.08 -13.13 16 17 N -0.73 -13.58 5.56 -65.23 -0.36 -13.94 16 18 C 0.14 3.14 5.61 -4.04 -0.02 3.11 16 19 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 20 C -0.52 -14.69 9.11 -34.44 -0.31 -15.01 16 21 H 0.06 1.65 7.74 -52.48 -0.41 1.25 16 22 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 23 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16 24 Si 0.90 21.69 29.54 -169.99 -5.02 16.66 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 28 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 29 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.51 8.13 -51.93 -0.42 0.08 16 31 H 0.10 0.64 7.94 -51.93 -0.41 0.23 16 32 H 0.08 0.56 8.09 -51.93 -0.42 0.14 16 33 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 34 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 35 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 36 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 37 H 0.12 0.89 7.57 -52.49 -0.40 0.49 16 38 H 0.40 4.21 7.84 -40.82 -0.32 3.89 16 39 H 0.39 6.26 8.49 -40.82 -0.35 5.91 16 40 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 381.69 15.07 5.75 5.75 Total: -1.00 -36.16 381.69 -8.98 -45.14 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -6.48 Total: 5.56 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: -2.74 Total: 2.54 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: 0.13 Total: -49.57 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -0.62 Total: -26.09 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.16 -8.98 -45.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189853482.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.298 kcal (2) G-P(sol) polarization free energy of solvation -36.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds