Wall clock time and date at job start Tue Mar 31 2020 12:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34234 * 116.99622 * 2 1 4 4 O 1.20820 * 120.00068 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99462 * 179.97438 * 3 2 1 6 6 H 1.09008 * 109.46977 * 60.00791 * 5 3 2 7 7 C 1.52997 * 109.47721 * 300.00641 * 5 3 2 8 8 C 1.50701 * 109.47212 * 174.99887 * 7 5 3 9 9 C 1.38233 * 120.00099 * 269.72808 * 8 7 5 10 10 C 1.38239 * 119.99655 * 179.76882 * 9 8 7 11 11 C 1.38230 * 120.00228 * 0.50243 * 10 9 8 12 12 C 1.38238 * 119.99995 * 359.75228 * 11 10 9 13 13 C 1.38238 * 120.00072 * 359.97438 * 12 11 10 14 14 N 1.46504 * 109.46820 * 180.02562 * 5 3 2 15 15 C 1.34776 * 120.00219 * 275.00554 * 14 5 3 16 16 O 1.21583 * 120.00057 * 359.97438 * 15 14 5 17 17 N 1.34781 * 119.99891 * 180.02562 * 15 14 5 18 18 C 1.46493 * 119.99865 * 179.97438 * 17 15 14 19 19 C 1.53002 * 109.46962 * 179.97438 * 18 17 15 20 20 C 1.50705 * 109.47043 * 180.02562 * 19 18 17 21 21 H 1.08004 * 120.00102 * 359.97438 * 20 19 18 22 22 C 1.37880 * 119.99983 * 180.02562 * 20 19 18 23 23 N 1.31509 * 119.99721 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99890 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46871 * 89.99931 * 24 22 20 26 26 H 1.48495 * 109.46904 * 209.99973 * 24 22 20 27 27 H 1.48493 * 109.47160 * 330.00198 * 24 22 20 28 28 H 1.08997 * 109.47490 * 59.99353 * 1 2 3 29 29 H 1.08996 * 109.47364 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47049 * 299.99593 * 1 2 3 31 31 H 1.09002 * 109.47153 * 54.99889 * 7 5 3 32 32 H 1.09001 * 109.46832 * 295.00079 * 7 5 3 33 33 H 1.08003 * 119.99927 * 359.97438 * 9 8 7 34 34 H 1.08000 * 119.99431 * 180.23215 * 10 9 8 35 35 H 1.07997 * 120.00220 * 179.73036 * 11 10 9 36 36 H 1.08002 * 119.99952 * 179.97438 * 12 11 10 37 37 H 1.07991 * 120.00062 * 179.97438 * 13 12 11 38 38 H 0.97006 * 119.99491 * 95.00623 * 14 5 3 39 39 H 0.97001 * 120.00009 * 359.97438 * 17 15 14 40 40 H 1.09001 * 109.47322 * 299.99611 * 18 17 15 41 41 H 1.09007 * 109.47484 * 59.99542 * 18 17 15 42 42 H 1.08996 * 109.46997 * 299.99369 * 19 18 17 43 43 H 1.08997 * 109.47159 * 60.00232 * 19 18 17 44 44 H 0.97008 * 119.99350 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2749 0.0006 6 1 3.9563 0.7807 -0.8893 7 6 4.1129 0.5815 1.2500 8 6 5.6185 0.5521 1.1901 9 6 6.2660 -0.5180 0.6016 10 6 7.6469 -0.5426 0.5425 11 6 8.3805 0.4978 1.0810 12 6 7.7330 1.5655 1.6743 13 6 6.3520 1.5929 1.7285 14 7 3.9816 2.6798 0.0011 15 6 4.0754 3.3553 -1.1614 16 8 3.8158 2.7985 -2.2107 17 7 4.4581 4.6476 -1.1609 18 6 4.5606 5.3816 -2.4246 19 6 5.0102 6.8172 -2.1454 20 6 5.1151 7.5724 -3.4453 21 1 4.8846 7.0779 -4.3774 22 6 5.5064 8.8945 -3.4448 23 7 5.7886 9.4963 -2.3100 24 14 5.6371 9.8305 -5.0562 25 1 4.3342 10.4743 -5.3617 26 1 6.6888 10.8723 -4.9395 27 1 5.9921 8.8889 -6.1482 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 3.7312 -0.4385 1.2959 32 1 3.7952 1.1287 2.1376 33 1 5.6930 -1.3333 0.1851 34 1 8.1527 -1.3769 0.0793 35 1 9.4594 0.4765 1.0387 36 1 8.3062 2.3782 2.0955 37 1 5.8462 2.4267 2.1923 38 1 4.1891 3.1239 0.8382 39 1 4.6655 5.0917 -0.3239 40 1 5.2886 4.8917 -3.0713 41 1 3.5882 5.3950 -2.9170 42 1 4.2819 7.3068 -1.4990 43 1 5.9825 6.8041 -1.6530 44 1 6.0636 10.4266 -2.3097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189853482.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:03 Heat of formation + Delta-G solvation = -122.803123 kcal Electronic energy + Delta-G solvation = -26517.985324 eV Core-core repulsion = 22627.169977 eV Total energy + Delta-G solvation = -3890.815347 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.99376 -40.78000 -40.05671 -37.73682 -36.89818 -36.28691 -34.85640 -33.51561 -31.70848 -31.57113 -30.26336 -28.37468 -26.72833 -25.54215 -23.50864 -23.13458 -22.45926 -21.99607 -21.64612 -19.63419 -18.79362 -18.46537 -18.22806 -17.67147 -17.27996 -17.02881 -16.50588 -16.44503 -16.00543 -15.96086 -15.39770 -15.26624 -15.04038 -14.61826 -14.48957 -14.27864 -14.20393 -13.83373 -13.73795 -13.22677 -13.14151 -12.97122 -12.93947 -12.64502 -12.52292 -12.26409 -12.11039 -11.83783 -11.81225 -11.69771 -11.66682 -11.52661 -11.25894 -10.61376 -10.51853 -9.87937 -9.73287 -9.58944 -8.23919 -6.34144 0.44307 0.57855 1.08558 1.32228 1.42070 1.42506 1.54136 1.81756 2.23469 2.41337 2.90317 3.10872 3.25491 3.59280 3.74416 3.88894 4.04352 4.16566 4.22748 4.30663 4.31361 4.35998 4.44343 4.50441 4.53034 4.68210 4.70231 4.80947 4.84494 4.85968 5.17485 5.20078 5.23916 5.27909 5.31404 5.49361 5.58890 5.62950 5.70465 5.71808 5.77267 5.92522 6.16807 6.18382 6.63975 6.78491 7.02016 7.34933 7.50711 8.88059 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010900 B = 0.003150 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.157834 B = 8886.795924 C =10839.152612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.354 6.354 3 C 0.447 3.553 4 O -0.531 6.531 5 C 0.186 3.814 6 H 0.119 0.881 7 C -0.068 4.068 8 C -0.093 4.093 9 C -0.121 4.121 10 C -0.131 4.131 11 C -0.133 4.133 12 C -0.134 4.134 13 C -0.120 4.120 14 N -0.710 5.710 15 C 0.706 3.294 16 O -0.635 6.635 17 N -0.729 5.729 18 C 0.162 3.838 19 C 0.025 3.975 20 C -0.547 4.547 21 H 0.058 0.942 22 C 0.008 3.992 23 N -0.926 5.926 24 Si 0.965 3.035 25 H -0.273 1.273 26 H -0.278 1.278 27 H -0.266 1.266 28 H 0.048 0.952 29 H 0.139 0.861 30 H 0.065 0.935 31 H 0.126 0.874 32 H 0.102 0.898 33 H 0.141 0.859 34 H 0.137 0.863 35 H 0.132 0.868 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.414 0.586 39 H 0.407 0.593 40 H 0.046 0.954 41 H 0.039 0.961 42 H 0.007 0.993 43 H 0.011 0.989 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.482 -24.342 13.493 27.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.269 6.269 3 C 0.289 3.711 4 O -0.420 6.420 5 C 0.077 3.923 6 H 0.136 0.864 7 C -0.105 4.105 8 C -0.093 4.093 9 C -0.139 4.139 10 C -0.149 4.149 11 C -0.151 4.151 12 C -0.152 4.152 13 C -0.137 4.137 14 N -0.368 5.368 15 C 0.406 3.594 16 O -0.517 6.517 17 N -0.383 5.383 18 C 0.037 3.963 19 C -0.012 4.012 20 C -0.585 4.585 21 H 0.076 0.924 22 C -0.191 4.191 23 N -0.565 5.565 24 Si 0.790 3.210 25 H -0.199 1.199 26 H -0.204 1.204 27 H -0.190 1.190 28 H 0.067 0.933 29 H 0.157 0.843 30 H 0.084 0.916 31 H 0.145 0.855 32 H 0.121 0.879 33 H 0.159 0.841 34 H 0.155 0.845 35 H 0.150 0.850 36 H 0.149 0.851 37 H 0.151 0.849 38 H 0.252 0.748 39 H 0.243 0.757 40 H 0.064 0.936 41 H 0.057 0.943 42 H 0.025 0.975 43 H 0.030 0.970 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.892 -24.379 12.610 27.512 hybrid contribution 0.004 1.488 -0.174 1.499 sum -1.888 -22.891 12.436 26.119 Atomic orbital electron populations 1.23555 0.74942 1.05889 1.02150 1.86478 1.24792 1.32014 1.83622 1.24802 0.93185 0.81639 0.71494 1.90686 1.67606 1.37768 1.45919 1.20387 0.85195 0.82763 1.03919 0.86358 1.20834 0.91539 1.03563 0.94602 1.19726 0.94664 0.95306 0.99575 1.21370 0.94947 0.98690 0.98867 1.21437 0.94453 0.99316 0.99687 1.21464 1.00885 0.94469 0.98298 1.21420 0.95057 0.98872 0.99814 1.21289 0.94311 0.98323 0.99826 1.44632 1.72496 1.11691 1.07932 1.16066 0.77464 0.81677 0.84157 1.90855 1.59033 1.69471 1.32350 1.45153 1.72132 1.09833 1.11201 1.21082 0.99171 0.92149 0.83870 1.19115 0.95777 0.89602 0.96715 1.21456 1.46434 0.96865 0.93793 0.92378 1.25863 0.94536 0.98539 1.00163 1.70060 1.46549 1.12395 1.27518 0.85443 0.78086 0.78185 0.79328 1.19858 1.20364 1.19033 0.93311 0.84316 0.91608 0.85540 0.87935 0.84094 0.84491 0.85000 0.85144 0.84867 0.74806 0.75744 0.93563 0.94306 0.97496 0.97018 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 113.37 1.20 1.63 16 2 O -0.35 -7.11 10.37 -51.45 -0.53 -7.64 16 3 C 0.45 11.47 7.29 71.24 0.52 11.98 16 4 O -0.53 -17.89 16.07 21.98 0.35 -17.54 16 5 C 0.19 4.07 2.47 44.24 0.11 4.18 16 6 H 0.12 2.92 7.58 -2.38 -0.02 2.90 16 7 C -0.07 -0.89 4.85 29.85 0.14 -0.75 16 8 C -0.09 -1.47 4.95 -19.86 -0.10 -1.57 16 9 C -0.12 -1.90 9.70 22.27 0.22 -1.68 16 10 C -0.13 -2.12 10.05 22.27 0.22 -1.90 16 11 C -0.13 -2.29 10.05 22.27 0.22 -2.06 16 12 C -0.13 -2.36 10.05 22.27 0.22 -2.14 16 13 C -0.12 -1.99 9.10 22.27 0.20 -1.79 16 14 N -0.71 -18.30 4.06 -461.40 -1.87 -20.18 16 15 C 0.71 25.86 8.40 179.05 1.50 27.36 16 16 O -0.64 -28.55 16.01 -3.98 -0.06 -28.62 16 17 N -0.73 -27.15 5.56 -478.54 -2.66 -29.81 16 18 C 0.16 7.35 5.61 86.38 0.48 7.84 16 19 C 0.03 1.32 5.09 29.85 0.15 1.47 16 20 C -0.55 -31.25 9.11 25.60 0.23 -31.02 16 21 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 22 C 0.01 0.44 5.46 84.66 0.46 0.91 16 23 N -0.93 -54.84 13.29 21.45 0.28 -54.55 16 24 Si 0.97 44.28 29.54 68.60 2.03 46.30 16 25 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 26 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 27 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 28 H 0.05 0.91 8.13 -2.39 -0.02 0.89 16 29 H 0.14 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.07 0.98 8.13 -2.38 -0.02 0.96 16 31 H 0.13 1.14 7.94 -2.39 -0.02 1.12 16 32 H 0.10 1.03 8.09 -2.39 -0.02 1.01 16 33 H 0.14 1.62 8.06 -2.91 -0.02 1.59 16 34 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 35 H 0.13 1.81 8.06 -2.91 -0.02 1.79 16 36 H 0.13 1.97 8.06 -2.91 -0.02 1.95 16 37 H 0.13 1.74 7.57 -2.92 -0.02 1.71 16 38 H 0.41 8.14 7.84 -92.70 -0.73 7.41 16 39 H 0.41 12.85 8.49 -92.71 -0.79 12.07 16 40 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16 42 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 43 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.27 14.77 8.31 -92.70 -0.77 14.00 16 Total: -1.00 -78.37 381.69 2.84 -75.53 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: -0.49 Total: 24.04 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: 5.80 Total: 12.46 kcal Atomic # 7 Polarization: -100.28 SS G_CDS: -4.25 Total: -104.53 kcal Atomic # 8 Polarization: -53.56 SS G_CDS: -0.24 Total: -53.80 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -78.37 2.84 -75.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189853482.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.270 kcal (2) G-P(sol) polarization free energy of solvation -78.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds