Wall clock time and date at job start Tue Mar 31 2020 12:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38810 * 120.42149 * 2 1 4 4 C 1.39498 * 118.26320 * 179.97438 * 3 2 1 5 5 C 1.48455 * 120.55050 * 180.02562 * 4 3 2 6 6 O 1.21477 * 119.99924 * 7.74919 * 5 4 3 7 7 N 1.34780 * 119.99867 * 187.75027 * 5 4 3 8 8 C 1.47507 * 118.75519 * 179.13615 * 7 5 4 9 9 C 1.53564 * 111.02788 * 138.34729 * 8 7 5 10 10 C 1.51543 * 109.58373 * 320.02305 * 9 8 7 11 11 O 1.42151 * 108.75308 * 91.40008 * 10 9 8 12 12 C 1.38016 * 119.44111 * 272.77075 * 11 10 9 13 13 H 1.08996 * 109.47482 * 303.43186 * 12 11 10 14 14 C 1.52998 * 109.46945 * 183.42985 * 12 11 10 15 15 N 1.46500 * 109.46973 * 64.99604 * 14 12 11 16 16 C 1.36940 * 120.00020 * 179.72544 * 15 14 12 17 17 H 1.08001 * 119.99876 * 0.27165 * 16 15 14 18 18 C 1.38811 * 119.99845 * 180.26989 * 16 15 14 19 19 N 1.31615 * 120.00322 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99881 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46988 * 90.00176 * 20 18 16 22 22 H 1.48494 * 109.47104 * 210.00367 * 20 18 16 23 23 H 1.48500 * 109.47039 * 330.00324 * 20 18 16 24 24 C 1.45126 * 118.75778 * 359.11821 * 7 5 4 25 25 N 1.33101 * 118.89788 * 0.27982 * 4 3 2 26 26 C 1.31554 * 120.74100 * 359.44341 * 25 4 3 27 27 N 1.31916 * 121.91659 * 0.56726 * 26 25 4 28 28 H 1.08998 * 109.46731 * 90.00079 * 1 2 3 29 29 H 1.09007 * 109.46579 * 209.99515 * 1 2 3 30 30 H 1.08997 * 109.47295 * 329.99496 * 1 2 3 31 31 H 1.08000 * 120.87072 * 359.96435 * 3 2 1 32 32 H 1.08996 * 109.16907 * 258.74394 * 8 7 5 33 33 H 1.09007 * 109.16609 * 17.94946 * 8 7 5 34 34 H 1.09006 * 109.45878 * 80.05557 * 9 8 7 35 35 H 1.09007 * 109.45689 * 199.98981 * 9 8 7 36 36 H 1.08997 * 109.59001 * 211.18522 * 10 9 8 37 37 H 1.09001 * 109.58262 * 331.62224 * 10 9 8 38 38 H 1.09001 * 109.47546 * 304.99150 * 14 12 11 39 39 H 1.09007 * 109.47293 * 184.98984 * 14 12 11 40 40 H 0.96994 * 119.99771 * 359.97438 * 15 14 12 41 41 H 0.96996 * 120.00423 * 179.97438 * 19 18 16 42 42 H 1.08997 * 109.46097 * 149.28333 * 24 7 5 43 43 H 1.09003 * 109.46124 * 29.32435 * 24 7 5 44 44 H 1.08002 * 119.04531 * 180.29173 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1970 0.0000 4 6 3.6039 1.1445 0.0005 5 6 4.4061 2.3936 0.0011 6 8 3.8571 3.4679 0.1430 7 7 5.7435 2.3357 -0.1557 8 6 6.5114 3.5950 -0.1702 9 6 7.8130 3.4558 0.6328 10 6 7.5519 2.6467 1.8873 11 8 7.7964 1.2750 1.6055 12 6 6.7801 0.4969 1.0891 13 1 5.9200 0.5321 1.7576 14 6 7.2627 -0.9487 0.9547 15 7 7.5342 -1.4986 2.2852 16 6 7.9748 -2.7886 2.4161 17 1 8.1263 -3.3991 1.5382 18 6 8.2266 -3.3113 3.6771 19 7 8.0415 -2.5674 4.7469 20 14 8.8270 -5.0713 3.8557 21 1 10.3114 -5.0936 3.8224 22 1 8.3524 -5.6274 5.1482 23 1 8.2944 -5.8917 2.7384 24 6 6.3735 1.0367 -0.3037 25 7 4.2027 -0.0442 -0.0046 26 6 3.4956 -1.1535 0.0008 27 7 2.1765 -1.1397 0.0004 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 1.6911 2.1442 -0.0006 32 1 6.7529 3.8551 -1.2007 33 1 5.9051 4.3890 0.2659 34 1 8.5628 2.9501 0.0243 35 1 8.1771 4.4456 0.9085 36 1 8.2178 2.9808 2.6829 37 1 6.5149 2.7771 2.1969 38 1 8.1748 -0.9734 0.3583 39 1 6.4924 -1.5450 0.4654 40 1 7.3984 -0.9501 3.0735 41 1 8.2171 -2.9329 5.6281 42 1 7.2609 1.1326 -0.9292 43 1 5.6731 0.3445 -0.7711 44 1 4.0099 -2.1032 0.0011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200282124.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:15 Heat of formation + Delta-G solvation = 13.034848 kcal Electronic energy + Delta-G solvation = -28062.957724 eV Core-core repulsion = 24210.325504 eV Total energy + Delta-G solvation = -3852.632220 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.64228 -40.13259 -38.51233 -35.54516 -35.11569 -34.34020 -33.09168 -32.55270 -30.92498 -29.05753 -28.54756 -26.94221 -25.54240 -24.57219 -23.77159 -22.60231 -21.43753 -20.90102 -19.76361 -18.26399 -17.31639 -17.11946 -16.49960 -16.42330 -15.83053 -15.77290 -15.60216 -15.27198 -14.71687 -14.64622 -14.24537 -13.88556 -13.59377 -13.35602 -13.19386 -13.07362 -13.01038 -12.68219 -12.44351 -12.24276 -12.08725 -11.78573 -11.30845 -10.92804 -10.89230 -10.77577 -10.74919 -10.67415 -10.49163 -10.17313 -9.96749 -9.79567 -9.65771 -9.35515 -9.12432 -8.80606 -8.48809 -6.81774 -5.67758 -2.95603 0.32234 0.70867 2.53936 2.66890 3.48402 3.52967 3.54885 3.58302 3.71596 3.82697 4.05568 4.11885 4.59221 4.65224 4.71846 4.76504 4.87302 5.02148 5.11871 5.20816 5.27262 5.32654 5.36137 5.42096 5.47292 5.56986 5.62332 5.65066 5.66529 5.75891 5.91682 6.00784 6.07820 6.18522 6.32589 6.38590 6.45773 6.66141 6.74774 6.86076 7.13422 7.74588 7.75820 7.90547 8.10241 8.50574 9.61974 10.21752 10.56872 11.55228 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010705 B = 0.004661 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.857558 B = 6005.481144 C = 8101.117395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.176 3.824 3 C -0.173 4.173 4 C 0.132 3.868 5 C 0.564 3.436 6 O -0.534 6.534 7 N -0.582 5.582 8 C 0.107 3.893 9 C -0.164 4.164 10 C 0.074 3.926 11 O -0.372 6.372 12 C 0.101 3.899 13 H 0.046 0.954 14 C 0.172 3.828 15 N -0.727 5.727 16 C -0.235 4.235 17 H 0.070 0.930 18 C -0.014 4.014 19 N -0.933 5.933 20 Si 0.905 3.095 21 H -0.291 1.291 22 H -0.293 1.293 23 H -0.282 1.282 24 C 0.051 3.949 25 N -0.483 5.483 26 C 0.305 3.695 27 N -0.506 5.506 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.157 0.843 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.045 0.955 38 H 0.023 0.977 39 H 0.037 0.963 40 H 0.385 0.615 41 H 0.254 0.746 42 H 0.075 0.925 43 H 0.139 0.861 44 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.284 11.706 -13.045 20.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.028 3.972 3 C -0.196 4.196 4 C -0.015 4.015 5 C 0.350 3.650 6 O -0.410 6.410 7 N -0.313 5.313 8 C -0.014 4.014 9 C -0.203 4.203 10 C -0.003 4.003 11 O -0.290 6.290 12 C 0.041 3.959 13 H 0.064 0.936 14 C 0.044 3.956 15 N -0.371 5.371 16 C -0.366 4.366 17 H 0.088 0.912 18 C -0.210 4.210 19 N -0.582 5.582 20 Si 0.736 3.264 21 H -0.218 1.218 22 H -0.219 1.219 23 H -0.208 1.208 24 C -0.073 4.073 25 N -0.200 5.200 26 C 0.018 3.982 27 N -0.221 5.221 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.174 0.826 32 H 0.086 0.914 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.063 0.937 38 H 0.041 0.959 39 H 0.055 0.945 40 H 0.219 0.781 41 H 0.063 0.937 42 H 0.093 0.907 43 H 0.156 0.844 44 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -10.828 11.213 -12.997 20.295 hybrid contribution -0.147 0.097 0.429 0.464 sum -10.975 11.310 -12.568 20.157 Atomic orbital electron populations 1.20814 0.87313 1.04455 1.03837 1.21858 0.97928 0.87786 0.89611 1.22721 0.94436 1.01267 1.01171 1.21578 0.92039 0.92729 0.95163 1.17986 0.82435 0.87116 0.77490 1.90757 1.71138 1.28777 1.50326 1.47869 1.05786 1.08447 1.69153 1.21935 0.93073 0.85654 1.00742 1.22492 0.97211 1.01925 0.98633 1.22098 1.00623 0.81880 0.95698 1.86424 1.39518 1.20177 1.82908 1.22125 0.89985 0.91906 0.91912 0.93592 1.20546 0.97345 0.87665 0.90061 1.42251 1.80286 1.12701 1.01832 1.19217 1.36245 0.88898 0.92289 0.91202 1.24717 1.02687 0.98117 0.95498 1.69673 1.55413 1.35843 0.97226 0.86217 0.78498 0.84745 0.76897 1.21821 1.21922 1.20784 1.23516 1.00088 0.83498 1.00148 1.68883 1.39386 0.98583 1.13143 1.25347 0.86390 0.97410 0.89070 1.68266 1.10686 1.30271 1.12912 0.89473 0.89515 0.89879 0.82558 0.91365 0.89068 0.89979 0.89655 0.89312 0.93695 0.95878 0.94514 0.78099 0.93659 0.90676 0.84430 0.77554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 10.22 36.01 0.37 -0.37 16 2 C 0.18 1.90 6.83 -82.23 -0.56 1.33 16 3 C -0.17 -1.99 9.41 -38.90 -0.37 -2.35 16 4 C 0.13 1.78 6.61 -82.64 -0.55 1.23 16 5 C 0.56 8.15 7.64 -12.05 -0.09 8.06 16 6 O -0.53 -8.49 15.75 5.39 0.08 -8.41 16 7 N -0.58 -7.82 2.19 -173.35 -0.38 -8.20 16 8 C 0.11 1.22 6.16 -3.20 -0.02 1.20 16 9 C -0.16 -1.83 5.78 -27.18 -0.16 -1.99 16 10 C 0.07 1.07 6.38 36.42 0.23 1.30 16 11 O -0.37 -6.81 9.38 -26.54 -0.25 -7.06 16 12 C 0.10 1.76 2.02 -25.78 -0.05 1.71 16 13 H 0.05 0.90 7.66 -51.93 -0.40 0.50 16 14 C 0.17 3.49 5.92 -4.04 -0.02 3.47 16 15 N -0.73 -18.87 5.54 -59.91 -0.33 -19.20 16 16 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 17 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 18 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 19 N -0.93 -28.84 13.06 55.49 0.72 -28.12 16 20 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 22 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 24 C 0.05 0.71 4.43 -3.82 -0.02 0.69 16 25 N -0.48 -6.57 5.08 -11.14 -0.06 -6.63 16 26 C 0.30 3.91 12.28 -92.25 -1.13 2.78 16 27 N -0.51 -6.34 10.36 -10.80 -0.11 -6.45 16 28 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.09 0.61 8.14 -51.92 -0.42 0.18 16 30 H 0.08 0.44 8.10 -51.93 -0.42 0.02 16 31 H 0.16 1.55 7.76 -52.49 -0.41 1.14 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.09 1.07 6.98 -51.92 -0.36 0.71 16 34 H 0.08 0.95 8.01 -51.93 -0.42 0.54 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.04 0.68 7.40 -51.93 -0.38 0.30 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.04 0.70 8.14 -51.92 -0.42 0.28 16 40 H 0.39 10.87 7.65 -40.82 -0.31 10.56 16 41 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 42 H 0.07 0.99 8.11 -51.93 -0.42 0.57 16 43 H 0.14 1.88 4.64 -69.69 -0.32 1.55 16 44 H 0.21 2.32 8.06 -52.49 -0.42 1.89 16 LS Contribution 358.90 15.07 5.41 5.41 Total: -1.00 -34.19 358.90 -8.92 -43.11 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -6.37 Total: 8.20 kcal Atomic # 6 Polarization: 12.38 SS G_CDS: -2.61 Total: 9.77 kcal Atomic # 7 Polarization: -68.44 SS G_CDS: -0.16 Total: -68.60 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.16 Total: -15.46 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.19 -8.92 -43.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200282124.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.143 kcal (2) G-P(sol) polarization free energy of solvation -34.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds