Wall clock time and date at job start Tue Mar 31 2020 12:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38810 * 120.42149 * 2 1 4 4 C 1.39498 * 118.26320 * 179.97438 * 3 2 1 5 5 C 1.48455 * 120.55050 * 180.02562 * 4 3 2 6 6 O 1.21477 * 119.99924 * 7.74919 * 5 4 3 7 7 N 1.34780 * 119.99867 * 187.75027 * 5 4 3 8 8 C 1.47507 * 118.75519 * 179.13615 * 7 5 4 9 9 C 1.53564 * 111.02788 * 138.34729 * 8 7 5 10 10 C 1.51543 * 109.58373 * 320.02305 * 9 8 7 11 11 O 1.42151 * 108.75308 * 91.40008 * 10 9 8 12 12 C 1.38016 * 119.44111 * 272.77075 * 11 10 9 13 13 H 1.08996 * 109.47482 * 303.43186 * 12 11 10 14 14 C 1.52998 * 109.46945 * 183.42985 * 12 11 10 15 15 N 1.46500 * 109.46973 * 64.99604 * 14 12 11 16 16 C 1.36940 * 120.00020 * 179.72544 * 15 14 12 17 17 H 1.08001 * 119.99876 * 0.27165 * 16 15 14 18 18 C 1.38811 * 119.99845 * 180.26989 * 16 15 14 19 19 N 1.31615 * 120.00322 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99881 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46988 * 90.00176 * 20 18 16 22 22 H 1.48494 * 109.47104 * 210.00367 * 20 18 16 23 23 H 1.48500 * 109.47039 * 330.00324 * 20 18 16 24 24 C 1.45126 * 118.75778 * 359.11821 * 7 5 4 25 25 N 1.33101 * 118.89788 * 0.27982 * 4 3 2 26 26 C 1.31554 * 120.74100 * 359.44341 * 25 4 3 27 27 N 1.31916 * 121.91659 * 0.56726 * 26 25 4 28 28 H 1.08998 * 109.46731 * 90.00079 * 1 2 3 29 29 H 1.09007 * 109.46579 * 209.99515 * 1 2 3 30 30 H 1.08997 * 109.47295 * 329.99496 * 1 2 3 31 31 H 1.08000 * 120.87072 * 359.96435 * 3 2 1 32 32 H 1.08996 * 109.16907 * 258.74394 * 8 7 5 33 33 H 1.09007 * 109.16609 * 17.94946 * 8 7 5 34 34 H 1.09006 * 109.45878 * 80.05557 * 9 8 7 35 35 H 1.09007 * 109.45689 * 199.98981 * 9 8 7 36 36 H 1.08997 * 109.59001 * 211.18522 * 10 9 8 37 37 H 1.09001 * 109.58262 * 331.62224 * 10 9 8 38 38 H 1.09001 * 109.47546 * 304.99150 * 14 12 11 39 39 H 1.09007 * 109.47293 * 184.98984 * 14 12 11 40 40 H 0.96994 * 119.99771 * 359.97438 * 15 14 12 41 41 H 0.96996 * 120.00423 * 179.97438 * 19 18 16 42 42 H 1.08997 * 109.46097 * 149.28333 * 24 7 5 43 43 H 1.09003 * 109.46124 * 29.32435 * 24 7 5 44 44 H 1.08002 * 119.04531 * 180.29173 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1970 0.0000 4 6 3.6039 1.1445 0.0005 5 6 4.4061 2.3936 0.0011 6 8 3.8571 3.4679 0.1430 7 7 5.7435 2.3357 -0.1557 8 6 6.5114 3.5950 -0.1702 9 6 7.8130 3.4558 0.6328 10 6 7.5519 2.6467 1.8873 11 8 7.7964 1.2750 1.6055 12 6 6.7801 0.4969 1.0891 13 1 5.9200 0.5321 1.7576 14 6 7.2627 -0.9487 0.9547 15 7 7.5342 -1.4986 2.2852 16 6 7.9748 -2.7886 2.4161 17 1 8.1263 -3.3991 1.5382 18 6 8.2266 -3.3113 3.6771 19 7 8.0415 -2.5674 4.7469 20 14 8.8270 -5.0713 3.8557 21 1 10.3114 -5.0936 3.8224 22 1 8.3524 -5.6274 5.1482 23 1 8.2944 -5.8917 2.7384 24 6 6.3735 1.0367 -0.3037 25 7 4.2027 -0.0442 -0.0046 26 6 3.4956 -1.1535 0.0008 27 7 2.1765 -1.1397 0.0004 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 1.6911 2.1442 -0.0006 32 1 6.7529 3.8551 -1.2007 33 1 5.9051 4.3890 0.2659 34 1 8.5628 2.9501 0.0243 35 1 8.1771 4.4456 0.9085 36 1 8.2178 2.9808 2.6829 37 1 6.5149 2.7771 2.1969 38 1 8.1748 -0.9734 0.3583 39 1 6.4924 -1.5450 0.4654 40 1 7.3984 -0.9501 3.0735 41 1 8.2171 -2.9329 5.6281 42 1 7.2609 1.1326 -0.9292 43 1 5.6731 0.3445 -0.7711 44 1 4.0099 -2.1032 0.0011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200282124.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:15 Heat of formation + Delta-G solvation = -8.829548 kcal Electronic energy + Delta-G solvation = -28063.905835 eV Core-core repulsion = 24210.325504 eV Total energy + Delta-G solvation = -3853.580331 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.63625 -41.22093 -39.76165 -36.76680 -36.53454 -35.61844 -34.32700 -33.66640 -32.67981 -30.29663 -29.57091 -28.04545 -27.01778 -25.76996 -24.86370 -24.21944 -22.61231 -22.25408 -20.79872 -19.27322 -19.19731 -18.38710 -17.70420 -17.55763 -16.92188 -16.91298 -16.63370 -16.42165 -16.29613 -15.74394 -15.69532 -15.10204 -14.86880 -14.73335 -14.53409 -14.26359 -13.93782 -13.79065 -13.56991 -13.32772 -13.21632 -13.10854 -12.74611 -12.71900 -12.40014 -12.12051 -11.92327 -11.84507 -11.77212 -11.70840 -11.59601 -11.34800 -10.91651 -10.70288 -10.58845 -10.13423 -9.64822 -8.93515 -7.88846 -5.17263 -0.66588 -0.18933 1.46738 1.50072 1.52407 1.60481 1.65841 2.59313 2.60885 2.71873 2.78868 3.00290 3.19472 3.45731 3.66428 3.71863 3.82404 3.89750 4.04743 4.09466 4.12274 4.28999 4.32941 4.43723 4.44921 4.49357 4.59723 4.70418 4.72662 4.76278 4.78842 4.85572 4.96885 5.05711 5.10729 5.21556 5.25175 5.35825 5.44502 5.54262 5.73116 6.04138 6.31678 6.70397 6.79240 6.91364 7.38118 8.14480 8.38197 9.35409 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010705 B = 0.004661 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.857558 B = 6005.481144 C = 8101.117395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.177 3.823 3 C -0.169 4.169 4 C 0.110 3.890 5 C 0.561 3.439 6 O -0.553 6.553 7 N -0.582 5.582 8 C 0.104 3.896 9 C -0.152 4.152 10 C 0.069 3.931 11 O -0.401 6.401 12 C 0.115 3.885 13 H 0.020 0.980 14 C 0.171 3.829 15 N -0.741 5.741 16 C -0.237 4.237 17 H 0.082 0.918 18 C -0.079 4.079 19 N -0.974 5.974 20 Si 0.974 3.026 21 H -0.289 1.289 22 H -0.299 1.299 23 H -0.264 1.264 24 C 0.066 3.934 25 N -0.496 5.496 26 C 0.294 3.706 27 N -0.519 5.519 28 H 0.107 0.893 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.172 0.828 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.116 0.884 36 H 0.095 0.905 37 H 0.031 0.969 38 H 0.024 0.976 39 H 0.055 0.945 40 H 0.370 0.630 41 H 0.248 0.752 42 H 0.089 0.911 43 H 0.145 0.855 44 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.854 11.973 -14.793 22.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.029 3.971 3 C -0.192 4.192 4 C -0.035 4.035 5 C 0.347 3.653 6 O -0.431 6.431 7 N -0.312 5.312 8 C -0.017 4.017 9 C -0.190 4.190 10 C -0.008 4.008 11 O -0.320 6.320 12 C 0.055 3.945 13 H 0.038 0.962 14 C 0.044 3.956 15 N -0.382 5.382 16 C -0.369 4.369 17 H 0.100 0.900 18 C -0.271 4.271 19 N -0.625 5.625 20 Si 0.803 3.197 21 H -0.217 1.217 22 H -0.226 1.226 23 H -0.189 1.189 24 C -0.058 4.058 25 N -0.214 5.214 26 C 0.007 3.993 27 N -0.234 5.234 28 H 0.125 0.875 29 H 0.105 0.895 30 H 0.121 0.879 31 H 0.190 0.810 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.134 0.866 36 H 0.113 0.887 37 H 0.050 0.950 38 H 0.042 0.958 39 H 0.072 0.928 40 H 0.201 0.799 41 H 0.057 0.943 42 H 0.107 0.893 43 H 0.161 0.839 44 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -11.392 11.493 -14.807 21.934 hybrid contribution -0.022 0.083 0.958 0.962 sum -11.414 11.576 -13.849 21.356 Atomic orbital electron populations 1.20964 0.84369 1.05456 1.05358 1.22498 0.99690 0.86966 0.87928 1.22950 0.93736 1.02294 1.00236 1.21643 0.92963 0.92439 0.96472 1.18172 0.82777 0.87224 0.77093 1.90735 1.71512 1.29447 1.51375 1.47938 1.05737 1.08851 1.68642 1.22121 0.92755 0.84600 1.02176 1.22404 0.97099 1.02791 0.96674 1.22296 1.00019 0.80600 0.97841 1.86351 1.40064 1.22135 1.83496 1.21831 0.88568 0.90653 0.93440 0.96224 1.20714 0.97687 0.89718 0.87485 1.42469 1.80266 1.12138 1.03368 1.19686 1.34672 0.89851 0.92651 0.90040 1.25569 1.03862 1.02331 0.95295 1.69853 1.57447 1.37772 0.97472 0.85131 0.77701 0.80029 0.76871 1.21666 1.22573 1.18867 1.23289 1.00758 0.83987 0.97761 1.68784 1.39849 0.98821 1.13960 1.25555 0.86882 0.97563 0.89272 1.68334 1.10545 1.31157 1.13401 0.87474 0.89458 0.87904 0.81027 0.89000 0.89374 0.89911 0.86622 0.88721 0.95030 0.95831 0.92781 0.79940 0.94292 0.89306 0.83850 0.76776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.20 10.22 71.24 0.73 -0.47 16 2 C 0.18 3.57 6.83 42.64 0.29 3.86 16 3 C -0.17 -3.71 9.41 22.71 0.21 -3.49 16 4 C 0.11 2.94 6.61 41.98 0.28 3.22 16 5 C 0.56 15.91 7.64 86.97 0.66 16.58 16 6 O -0.55 -17.23 15.75 -3.64 -0.06 -17.29 16 7 N -0.58 -15.08 2.19 -820.67 -1.80 -16.88 16 8 C 0.10 2.18 6.16 86.38 0.53 2.71 16 9 C -0.15 -3.08 5.78 30.31 0.18 -2.90 16 10 C 0.07 1.96 6.38 71.50 0.46 2.42 16 11 O -0.40 -14.79 9.38 -117.87 -1.11 -15.90 16 12 C 0.11 4.05 2.02 31.21 0.06 4.12 16 13 H 0.02 0.80 7.66 -2.39 -0.02 0.78 16 14 C 0.17 6.94 5.92 86.38 0.51 7.45 16 15 N -0.74 -39.09 5.54 -343.44 -1.90 -40.99 16 16 C -0.24 -13.38 9.99 84.03 0.84 -12.54 16 17 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 18 C -0.08 -4.62 5.50 84.86 0.47 -4.16 16 19 N -0.97 -61.63 13.06 21.65 0.28 -61.35 16 20 Si 0.97 46.72 29.55 68.60 2.03 48.75 16 21 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 22 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 23 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 24 C 0.07 1.78 4.43 87.26 0.39 2.17 16 25 N -0.50 -13.46 5.08 -189.16 -0.96 -14.42 16 26 C 0.29 7.50 12.28 180.92 2.22 9.72 16 27 N -0.52 -12.61 10.36 -188.09 -1.95 -14.56 16 28 H 0.11 0.85 8.14 -2.39 -0.02 0.84 16 29 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 30 H 0.10 0.80 8.10 -2.39 -0.02 0.78 16 31 H 0.17 3.13 7.76 -2.91 -0.02 3.11 16 32 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.09 1.94 6.98 -2.38 -0.02 1.92 16 34 H 0.08 1.72 8.01 -2.38 -0.02 1.71 16 35 H 0.12 1.68 8.14 -2.38 -0.02 1.66 16 36 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.03 0.97 7.40 -2.39 -0.02 0.96 16 38 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 40 H 0.37 21.56 7.65 -92.71 -0.71 20.85 16 41 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 42 H 0.09 2.18 8.11 -2.39 -0.02 2.16 16 43 H 0.14 3.80 4.64 -37.46 -0.17 3.63 16 44 H 0.22 4.82 8.06 -2.91 -0.02 4.80 16 Total: -1.00 -74.40 358.90 2.51 -71.89 By element: Atomic # 1 Polarization: 31.92 SS G_CDS: 0.15 Total: 32.07 kcal Atomic # 6 Polarization: 20.86 SS G_CDS: 7.83 Total: 28.68 kcal Atomic # 7 Polarization: -141.88 SS G_CDS: -6.33 Total: -148.20 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: -1.16 Total: -33.19 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -74.40 2.51 -71.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200282124.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.055 kcal (2) G-P(sol) polarization free energy of solvation -74.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds