Wall clock time and date at job start Tue Mar 31 2020 12:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38810 * 120.43051 * 2 1 4 4 C 1.39490 * 118.26796 * 180.02562 * 3 2 1 5 5 C 1.48452 * 120.55169 * 179.97438 * 4 3 2 6 6 O 1.21475 * 120.00092 * 353.10992 * 5 4 3 7 7 N 1.34779 * 119.99823 * 172.83174 * 5 4 3 8 8 C 1.47509 * 118.75210 * 173.87749 * 7 5 4 9 9 C 1.53197 * 111.23938 * 221.51017 * 8 7 5 10 10 C 1.51537 * 109.43106 * 40.26755 * 9 8 7 11 11 O 1.42153 * 108.76740 * 268.50684 * 10 9 8 12 12 C 1.38016 * 119.43583 * 87.21487 * 11 10 9 13 13 H 1.09001 * 109.47138 * 56.57268 * 12 11 10 14 14 C 1.53006 * 109.46909 * 176.56917 * 12 11 10 15 15 N 1.46497 * 109.46840 * 300.01021 * 14 12 11 16 16 C 1.36941 * 119.99634 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99880 * 0.02562 * 16 15 14 18 18 C 1.38815 * 119.99928 * 179.97438 * 16 15 14 19 19 N 1.31618 * 119.99686 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99880 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47399 * 60.00567 * 20 18 16 22 22 H 1.48502 * 109.46860 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47403 * 300.00063 * 20 18 16 24 24 C 1.45118 * 118.75710 * 354.14940 * 7 5 4 25 25 N 1.33109 * 118.89705 * 0.25073 * 4 3 2 26 26 C 1.31552 * 120.73694 * 359.48738 * 25 4 3 27 27 N 1.31901 * 121.91840 * 0.52710 * 26 25 4 28 28 H 1.08997 * 109.46786 * 89.99948 * 1 2 3 29 29 H 1.08993 * 109.46750 * 210.00144 * 1 2 3 30 30 H 1.09000 * 109.46891 * 329.99950 * 1 2 3 31 31 H 1.08006 * 120.86251 * 359.97438 * 3 2 1 32 32 H 1.08995 * 109.17040 * 342.03255 * 8 7 5 33 33 H 1.09007 * 109.16433 * 101.23091 * 8 7 5 34 34 H 1.09002 * 109.61320 * 280.23744 * 9 8 7 35 35 H 1.08997 * 109.43288 * 160.19564 * 9 8 7 36 36 H 1.08999 * 109.59297 * 148.71759 * 10 9 8 37 37 H 1.09004 * 109.58752 * 28.29099 * 10 9 8 38 38 H 1.08997 * 109.47096 * 60.01151 * 14 12 11 39 39 H 1.09005 * 109.47016 * 180.02562 * 14 12 11 40 40 H 0.96999 * 120.00483 * 359.97438 * 15 14 12 41 41 H 0.97006 * 119.99779 * 179.97438 * 19 18 16 42 42 H 1.09001 * 109.45990 * 210.72111 * 24 7 5 43 43 H 1.08995 * 109.45980 * 330.68747 * 24 7 5 44 44 H 1.08007 * 119.03835 * 180.26729 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2101 1.1969 0.0000 4 6 3.6040 1.1442 -0.0005 5 6 4.4063 2.3933 -0.0011 6 8 3.8558 3.4687 -0.1274 7 7 5.7449 2.3344 0.1440 8 6 6.5292 3.5757 0.0030 9 6 7.8171 3.3315 -0.7899 10 6 7.5283 2.3921 -1.9435 11 8 7.7594 1.0567 -1.5147 12 6 6.7408 0.3550 -0.9024 13 1 5.8718 0.3283 -1.5598 14 6 7.2068 -1.0737 -0.6148 15 7 7.5664 -1.7325 -1.8728 16 6 8.0152 -3.0263 -1.8642 17 1 8.1036 -3.5610 -0.9300 18 6 8.3555 -3.6508 -3.0563 19 7 8.2472 -2.9993 -4.1948 20 14 8.9670 -5.4158 -3.0447 21 1 7.9232 -6.2975 -2.4631 22 1 9.2613 -5.8469 -4.4349 23 1 10.2032 -5.5061 -2.2268 24 6 6.3607 1.0512 0.4271 25 7 4.2028 -0.0445 -0.0061 26 6 3.4954 -1.1537 -0.0010 27 7 2.1765 -1.1397 -0.0004 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3632 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6913 2.1442 -0.0004 32 1 5.9271 4.3228 -0.5140 33 1 6.7886 3.9496 0.9936 34 1 8.5689 2.8858 -0.1385 35 1 8.1892 4.2795 -1.1782 36 1 8.1872 2.6267 -2.7795 37 1 6.4889 2.5019 -2.2528 38 1 8.0757 -1.0470 0.0428 39 1 6.4022 -1.6280 -0.1316 40 1 7.4867 -1.2524 -2.7119 41 1 8.4854 -3.4356 -5.0278 42 1 7.2581 1.2034 1.0267 43 1 5.6585 0.4249 0.9772 44 1 4.0097 -2.1035 -0.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200282126.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:18 Heat of formation + Delta-G solvation = 12.659128 kcal Electronic energy + Delta-G solvation = -28126.040472 eV Core-core repulsion = 24273.391960 eV Total energy + Delta-G solvation = -3852.648512 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.62795 -40.12905 -38.52178 -35.53030 -35.11949 -34.31029 -33.09078 -32.55002 -30.92225 -29.04600 -28.53991 -26.93244 -25.54509 -24.56700 -23.74729 -22.61585 -21.42763 -20.86931 -19.72808 -18.24014 -17.34750 -17.13481 -16.50827 -16.40068 -15.79514 -15.76416 -15.55766 -15.27504 -14.70211 -14.61991 -14.25309 -13.87236 -13.55379 -13.36297 -13.18320 -13.06243 -13.01389 -12.67855 -12.45125 -12.24685 -12.05631 -11.74466 -11.28664 -10.94953 -10.92207 -10.75106 -10.74366 -10.66556 -10.52287 -10.15448 -9.95623 -9.77785 -9.64466 -9.36303 -9.14897 -8.79229 -8.53229 -6.80637 -5.66873 -2.94550 0.33343 0.73421 2.52656 2.67159 3.49116 3.53309 3.54483 3.60252 3.73095 3.84322 4.07042 4.13029 4.60975 4.66142 4.73104 4.77419 4.86920 5.02517 5.10796 5.22986 5.25773 5.34063 5.36019 5.42239 5.47846 5.57318 5.63253 5.65168 5.66573 5.74193 5.92270 6.03019 6.08141 6.20218 6.28524 6.38401 6.40079 6.68163 6.76331 6.87613 7.12240 7.75178 7.75933 7.91639 8.11934 8.51672 9.63020 10.23286 10.58647 11.55978 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010985 B = 0.004658 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.362059 B = 6009.970016 C = 8074.223731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.174 3.826 3 C -0.173 4.173 4 C 0.128 3.872 5 C 0.565 3.435 6 O -0.532 6.532 7 N -0.584 5.584 8 C 0.110 3.890 9 C -0.165 4.165 10 C 0.074 3.926 11 O -0.371 6.371 12 C 0.101 3.899 13 H 0.051 0.949 14 C 0.173 3.827 15 N -0.726 5.726 16 C -0.236 4.236 17 H 0.069 0.931 18 C -0.014 4.014 19 N -0.932 5.932 20 Si 0.905 3.095 21 H -0.287 1.287 22 H -0.292 1.292 23 H -0.287 1.287 24 C 0.070 3.930 25 N -0.482 5.482 26 C 0.305 3.695 27 N -0.506 5.506 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.156 0.844 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.044 0.956 38 H 0.021 0.979 39 H 0.036 0.964 40 H 0.386 0.614 41 H 0.254 0.746 42 H 0.076 0.924 43 H 0.118 0.882 44 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.627 12.872 10.942 20.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.026 3.974 3 C -0.196 4.196 4 C -0.019 4.019 5 C 0.351 3.649 6 O -0.409 6.409 7 N -0.315 5.315 8 C -0.012 4.012 9 C -0.204 4.204 10 C -0.003 4.003 11 O -0.289 6.289 12 C 0.041 3.959 13 H 0.069 0.931 14 C 0.045 3.955 15 N -0.370 5.370 16 C -0.367 4.367 17 H 0.087 0.913 18 C -0.210 4.210 19 N -0.581 5.581 20 Si 0.736 3.264 21 H -0.214 1.214 22 H -0.218 1.218 23 H -0.214 1.214 24 C -0.054 4.054 25 N -0.199 5.199 26 C 0.018 3.982 27 N -0.221 5.221 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.174 0.826 32 H 0.108 0.892 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.062 0.938 38 H 0.039 0.961 39 H 0.054 0.946 40 H 0.220 0.780 41 H 0.064 0.936 42 H 0.095 0.905 43 H 0.136 0.864 44 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -11.162 12.386 10.908 19.925 hybrid contribution -0.163 0.039 -0.336 0.376 sum -11.325 12.425 10.572 19.860 Atomic orbital electron populations 1.20806 0.87351 1.04216 1.04004 1.21849 0.97905 0.87803 0.89830 1.22721 0.94488 1.01227 1.01152 1.21562 0.91983 0.92813 0.95510 1.17998 0.82407 0.87126 0.77397 1.90757 1.71059 1.28674 1.50378 1.47858 1.05634 1.10054 1.67953 1.21838 0.92844 0.85613 1.00857 1.22444 0.97305 1.01394 0.99210 1.22098 1.00518 0.82190 0.95484 1.86432 1.40003 1.25281 1.77229 1.22146 0.89981 0.92254 0.91482 0.93102 1.20539 0.96942 0.87241 0.90805 1.42226 1.79121 1.12456 1.03167 1.19175 1.35715 0.88983 0.92861 0.91298 1.24713 1.02613 0.98224 0.95432 1.69670 1.54816 1.36559 0.97080 0.86299 0.78690 0.84980 0.76388 1.21351 1.21825 1.21362 1.23080 0.99452 0.82913 0.99909 1.69026 1.39945 0.98462 1.12499 1.25326 0.86295 0.97380 0.89245 1.68262 1.10747 1.30264 1.12812 0.89372 0.89617 0.89979 0.82619 0.89211 0.91379 0.89905 0.89600 0.89310 0.93804 0.96094 0.94627 0.77994 0.93628 0.90537 0.86428 0.77522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 10.22 36.01 0.37 -0.38 16 2 C 0.17 1.89 6.83 -82.23 -0.56 1.33 16 3 C -0.17 -1.99 9.41 -38.90 -0.37 -2.36 16 4 C 0.13 1.74 6.53 -82.64 -0.54 1.20 16 5 C 0.56 8.11 7.62 -12.05 -0.09 8.02 16 6 O -0.53 -8.41 15.80 5.39 0.09 -8.33 16 7 N -0.58 -7.80 2.20 -173.59 -0.38 -8.18 16 8 C 0.11 1.25 6.08 -3.39 -0.02 1.23 16 9 C -0.17 -1.83 5.78 -27.37 -0.16 -1.99 16 10 C 0.07 1.06 6.37 36.42 0.23 1.29 16 11 O -0.37 -6.77 9.18 -26.54 -0.24 -7.01 16 12 C 0.10 1.75 1.89 -25.78 -0.05 1.70 16 13 H 0.05 0.97 7.07 -51.93 -0.37 0.60 16 14 C 0.17 3.48 5.95 -4.04 -0.02 3.46 16 15 N -0.73 -18.73 5.49 -59.90 -0.33 -19.06 16 16 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 17 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 18 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 19 N -0.93 -28.74 13.06 55.49 0.72 -28.02 16 20 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 C 0.07 0.97 4.40 -3.83 -0.02 0.95 16 25 N -0.48 -6.66 4.41 -11.14 -0.05 -6.71 16 26 C 0.30 4.01 12.27 -92.27 -1.13 2.88 16 27 N -0.51 -6.44 10.36 -10.81 -0.11 -6.55 16 28 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.41 8.10 -51.93 -0.42 -0.01 16 31 H 0.16 1.55 7.75 -52.48 -0.41 1.14 16 32 H 0.09 1.05 7.08 -51.93 -0.37 0.68 16 33 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 34 H 0.08 0.96 8.01 -51.93 -0.42 0.54 16 35 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.04 0.66 7.39 -51.93 -0.38 0.27 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.04 0.67 7.98 -51.93 -0.41 0.26 16 40 H 0.39 10.83 7.53 -40.82 -0.31 10.53 16 41 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 42 H 0.08 1.00 8.12 -51.93 -0.42 0.58 16 43 H 0.12 1.59 5.21 -51.94 -0.27 1.32 16 44 H 0.21 2.48 8.06 -52.48 -0.42 2.06 16 LS Contribution 357.50 15.07 5.39 5.39 Total: -1.00 -33.91 357.50 -8.83 -42.74 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -6.28 Total: 8.13 kcal Atomic # 6 Polarization: 12.66 SS G_CDS: -2.61 Total: 10.06 kcal Atomic # 7 Polarization: -68.37 SS G_CDS: -0.15 Total: -68.52 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -0.16 Total: -15.34 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.91 -8.83 -42.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200282126.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.399 kcal (2) G-P(sol) polarization free energy of solvation -33.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds