Wall clock time and date at job start Tue Mar 31 2020 12:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38810 * 120.43051 * 2 1 4 4 C 1.39490 * 118.26796 * 180.02562 * 3 2 1 5 5 C 1.48452 * 120.55169 * 179.97438 * 4 3 2 6 6 O 1.21475 * 120.00092 * 353.10992 * 5 4 3 7 7 N 1.34779 * 119.99823 * 172.83174 * 5 4 3 8 8 C 1.47509 * 118.75210 * 173.87749 * 7 5 4 9 9 C 1.53197 * 111.23938 * 221.51017 * 8 7 5 10 10 C 1.51537 * 109.43106 * 40.26755 * 9 8 7 11 11 O 1.42153 * 108.76740 * 268.50684 * 10 9 8 12 12 C 1.38016 * 119.43583 * 87.21487 * 11 10 9 13 13 H 1.09001 * 109.47138 * 56.57268 * 12 11 10 14 14 C 1.53006 * 109.46909 * 176.56917 * 12 11 10 15 15 N 1.46497 * 109.46840 * 300.01021 * 14 12 11 16 16 C 1.36941 * 119.99634 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99880 * 0.02562 * 16 15 14 18 18 C 1.38815 * 119.99928 * 179.97438 * 16 15 14 19 19 N 1.31618 * 119.99686 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99880 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47399 * 60.00567 * 20 18 16 22 22 H 1.48502 * 109.46860 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47403 * 300.00063 * 20 18 16 24 24 C 1.45118 * 118.75710 * 354.14940 * 7 5 4 25 25 N 1.33109 * 118.89705 * 0.25073 * 4 3 2 26 26 C 1.31552 * 120.73694 * 359.48738 * 25 4 3 27 27 N 1.31901 * 121.91840 * 0.52710 * 26 25 4 28 28 H 1.08997 * 109.46786 * 89.99948 * 1 2 3 29 29 H 1.08993 * 109.46750 * 210.00144 * 1 2 3 30 30 H 1.09000 * 109.46891 * 329.99950 * 1 2 3 31 31 H 1.08006 * 120.86251 * 359.97438 * 3 2 1 32 32 H 1.08995 * 109.17040 * 342.03255 * 8 7 5 33 33 H 1.09007 * 109.16433 * 101.23091 * 8 7 5 34 34 H 1.09002 * 109.61320 * 280.23744 * 9 8 7 35 35 H 1.08997 * 109.43288 * 160.19564 * 9 8 7 36 36 H 1.08999 * 109.59297 * 148.71759 * 10 9 8 37 37 H 1.09004 * 109.58752 * 28.29099 * 10 9 8 38 38 H 1.08997 * 109.47096 * 60.01151 * 14 12 11 39 39 H 1.09005 * 109.47016 * 180.02562 * 14 12 11 40 40 H 0.96999 * 120.00483 * 359.97438 * 15 14 12 41 41 H 0.97006 * 119.99779 * 179.97438 * 19 18 16 42 42 H 1.09001 * 109.45990 * 210.72111 * 24 7 5 43 43 H 1.08995 * 109.45980 * 330.68747 * 24 7 5 44 44 H 1.08007 * 119.03835 * 180.26729 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2101 1.1969 0.0000 4 6 3.6040 1.1442 -0.0005 5 6 4.4063 2.3933 -0.0011 6 8 3.8558 3.4687 -0.1274 7 7 5.7449 2.3344 0.1440 8 6 6.5292 3.5757 0.0030 9 6 7.8171 3.3315 -0.7899 10 6 7.5283 2.3921 -1.9435 11 8 7.7594 1.0567 -1.5147 12 6 6.7408 0.3550 -0.9024 13 1 5.8718 0.3283 -1.5598 14 6 7.2068 -1.0737 -0.6148 15 7 7.5664 -1.7325 -1.8728 16 6 8.0152 -3.0263 -1.8642 17 1 8.1036 -3.5610 -0.9300 18 6 8.3555 -3.6508 -3.0563 19 7 8.2472 -2.9993 -4.1948 20 14 8.9670 -5.4158 -3.0447 21 1 7.9232 -6.2975 -2.4631 22 1 9.2613 -5.8469 -4.4349 23 1 10.2032 -5.5061 -2.2268 24 6 6.3607 1.0512 0.4271 25 7 4.2028 -0.0445 -0.0061 26 6 3.4954 -1.1537 -0.0010 27 7 2.1765 -1.1397 -0.0004 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3632 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6913 2.1442 -0.0004 32 1 5.9271 4.3228 -0.5140 33 1 6.7886 3.9496 0.9936 34 1 8.5689 2.8858 -0.1385 35 1 8.1892 4.2795 -1.1782 36 1 8.1872 2.6267 -2.7795 37 1 6.4889 2.5019 -2.2528 38 1 8.0757 -1.0470 0.0428 39 1 6.4022 -1.6280 -0.1316 40 1 7.4867 -1.2524 -2.7119 41 1 8.4854 -3.4356 -5.0278 42 1 7.2581 1.2034 1.0267 43 1 5.6585 0.4249 0.9772 44 1 4.0097 -2.1035 -0.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200282126.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:18 Heat of formation + Delta-G solvation = -8.681920 kcal Electronic energy + Delta-G solvation = -28126.965889 eV Core-core repulsion = 24273.391960 eV Total energy + Delta-G solvation = -3853.573929 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.63193 -41.21330 -39.76280 -36.76184 -36.50704 -35.60653 -34.32120 -33.66598 -32.67340 -30.29903 -29.54816 -28.03417 -27.01262 -25.77061 -24.84628 -24.22926 -22.58880 -22.22138 -20.76617 -19.25454 -19.17659 -18.44173 -17.66230 -17.57557 -16.93138 -16.87382 -16.58841 -16.40272 -16.30104 -15.72779 -15.68129 -15.08274 -14.87653 -14.71213 -14.52283 -14.22844 -13.94827 -13.78182 -13.56820 -13.31741 -13.20578 -13.08867 -12.71784 -12.66956 -12.38468 -12.15764 -11.93314 -11.88210 -11.77566 -11.70712 -11.60927 -11.27706 -10.88846 -10.71170 -10.55177 -10.17125 -9.70019 -8.91341 -7.87362 -5.15381 -0.66184 -0.17831 1.45901 1.50535 1.54136 1.59758 1.65815 2.60115 2.61462 2.73049 2.80684 3.00389 3.20160 3.46826 3.67604 3.73249 3.83741 3.90366 4.05662 4.08504 4.14247 4.29903 4.33843 4.44050 4.47068 4.50803 4.60357 4.71217 4.72412 4.76033 4.79099 4.85026 4.98007 5.02379 5.11772 5.21061 5.27472 5.36159 5.38291 5.54968 5.74735 6.03498 6.33080 6.70063 6.82238 6.92401 7.39852 8.17196 8.40808 9.36589 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010985 B = 0.004658 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.362059 B = 6009.970016 C = 8074.223731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.175 3.825 3 C -0.168 4.168 4 C 0.108 3.892 5 C 0.563 3.437 6 O -0.550 6.550 7 N -0.584 5.584 8 C 0.107 3.893 9 C -0.152 4.152 10 C 0.069 3.931 11 O -0.402 6.402 12 C 0.115 3.885 13 H 0.029 0.971 14 C 0.172 3.828 15 N -0.739 5.739 16 C -0.238 4.238 17 H 0.080 0.920 18 C -0.078 4.078 19 N -0.973 5.973 20 Si 0.973 3.027 21 H -0.275 1.275 22 H -0.299 1.299 23 H -0.278 1.278 24 C 0.085 3.915 25 N -0.496 5.496 26 C 0.294 3.706 27 N -0.519 5.519 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.106 0.894 31 H 0.173 0.827 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.116 0.884 36 H 0.094 0.906 37 H 0.032 0.968 38 H 0.021 0.979 39 H 0.052 0.948 40 H 0.371 0.629 41 H 0.248 0.752 42 H 0.089 0.911 43 H 0.123 0.877 44 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.298 13.426 12.526 22.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.027 3.973 3 C -0.191 4.191 4 C -0.038 4.038 5 C 0.349 3.651 6 O -0.428 6.428 7 N -0.314 5.314 8 C -0.014 4.014 9 C -0.190 4.190 10 C -0.007 4.007 11 O -0.321 6.321 12 C 0.056 3.944 13 H 0.047 0.953 14 C 0.045 3.955 15 N -0.381 5.381 16 C -0.370 4.370 17 H 0.098 0.902 18 C -0.270 4.270 19 N -0.624 5.624 20 Si 0.802 3.198 21 H -0.201 1.201 22 H -0.226 1.226 23 H -0.205 1.205 24 C -0.039 4.039 25 N -0.214 5.214 26 C 0.006 3.994 27 N -0.234 5.234 28 H 0.117 0.883 29 H 0.109 0.891 30 H 0.125 0.875 31 H 0.190 0.810 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.101 0.899 35 H 0.134 0.866 36 H 0.112 0.888 37 H 0.050 0.950 38 H 0.039 0.961 39 H 0.070 0.930 40 H 0.202 0.798 41 H 0.057 0.943 42 H 0.108 0.892 43 H 0.141 0.859 44 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -11.832 12.958 12.550 21.574 hybrid contribution -0.014 -0.064 -0.820 0.822 sum -11.846 12.894 11.731 21.076 Atomic orbital electron populations 1.20957 0.84372 1.05703 1.05069 1.22496 0.99677 0.86966 0.88157 1.22959 0.93781 1.02254 1.00072 1.21642 0.92923 0.92499 0.96747 1.18157 0.82727 0.87186 0.77023 1.90736 1.71403 1.29277 1.51406 1.47925 1.05600 1.10390 1.67471 1.22019 0.92538 0.84681 1.02138 1.22355 0.97163 1.01797 0.97724 1.22290 1.00010 0.81235 0.97191 1.86359 1.40599 1.27277 1.77831 1.21852 0.88646 0.91159 0.92789 0.95350 1.20704 0.97188 0.89048 0.88578 1.42432 1.79162 1.12101 1.04398 1.19644 1.34168 0.89942 0.93211 0.90175 1.25554 1.03819 1.02452 0.95161 1.69852 1.56781 1.38281 0.97518 0.85214 0.78470 0.80167 0.75927 1.20082 1.22592 1.20469 1.22838 1.00084 0.83138 0.97813 1.68944 1.40407 0.98720 1.13279 1.25435 0.86820 0.97431 0.89676 1.68321 1.10541 1.31244 1.13306 0.88267 0.89146 0.87499 0.80979 0.89411 0.89139 0.89942 0.86579 0.88831 0.94953 0.96077 0.92989 0.79798 0.94316 0.89245 0.85935 0.77223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.20 10.22 71.24 0.73 -0.48 16 2 C 0.18 3.56 6.83 42.64 0.29 3.85 16 3 C -0.17 -3.66 9.41 22.71 0.21 -3.45 16 4 C 0.11 2.87 6.53 41.98 0.27 3.14 16 5 C 0.56 15.76 7.62 86.97 0.66 16.43 16 6 O -0.55 -16.89 15.80 -3.64 -0.06 -16.94 16 7 N -0.58 -14.97 2.20 -821.41 -1.81 -16.78 16 8 C 0.11 2.21 6.08 86.25 0.52 2.74 16 9 C -0.15 -3.07 5.78 30.18 0.17 -2.90 16 10 C 0.07 1.95 6.37 71.50 0.46 2.41 16 11 O -0.40 -14.75 9.18 -117.87 -1.08 -15.83 16 12 C 0.12 4.02 1.89 31.21 0.06 4.08 16 13 H 0.03 1.12 7.07 -2.39 -0.02 1.11 16 14 C 0.17 6.94 5.95 86.38 0.51 7.45 16 15 N -0.74 -38.80 5.49 -343.44 -1.88 -40.68 16 16 C -0.24 -13.41 9.99 84.03 0.84 -12.57 16 17 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 18 C -0.08 -4.56 5.50 84.86 0.47 -4.10 16 19 N -0.97 -61.36 13.06 21.65 0.28 -61.08 16 20 Si 0.97 46.66 29.55 68.60 2.03 48.69 16 21 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 22 H -0.30 -14.58 7.11 99.48 0.71 -13.88 16 23 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 24 C 0.09 2.29 4.40 87.26 0.38 2.67 16 25 N -0.50 -13.68 4.41 -189.17 -0.84 -14.52 16 26 C 0.29 7.75 12.27 180.92 2.22 9.97 16 27 N -0.52 -12.89 10.36 -188.10 -1.95 -14.84 16 28 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.11 0.73 8.10 -2.39 -0.02 0.71 16 31 H 0.17 3.10 7.75 -2.91 -0.02 3.08 16 32 H 0.09 1.89 7.08 -2.39 -0.02 1.88 16 33 H 0.09 1.51 8.14 -2.38 -0.02 1.50 16 34 H 0.08 1.72 8.01 -2.39 -0.02 1.71 16 35 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.03 0.98 7.39 -2.39 -0.02 0.96 16 38 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.05 1.95 7.98 -2.38 -0.02 1.93 16 40 H 0.37 21.50 7.53 -92.71 -0.70 20.80 16 41 H 0.25 15.22 8.31 -92.70 -0.77 14.45 16 42 H 0.09 2.19 8.12 -2.39 -0.02 2.17 16 43 H 0.12 3.23 5.21 -2.41 -0.01 3.22 16 44 H 0.21 5.13 8.06 -2.91 -0.02 5.11 16 Total: -1.00 -73.63 357.50 2.83 -70.80 By element: Atomic # 1 Polarization: 31.61 SS G_CDS: 0.33 Total: 31.93 kcal Atomic # 6 Polarization: 21.44 SS G_CDS: 7.81 Total: 29.25 kcal Atomic # 7 Polarization: -141.70 SS G_CDS: -6.19 Total: -147.90 kcal Atomic # 8 Polarization: -31.63 SS G_CDS: -1.14 Total: -32.77 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -73.63 2.83 -70.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200282126.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.115 kcal (2) G-P(sol) polarization free energy of solvation -73.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds