Wall clock time and date at job start Tue Mar 31 2020 12:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38546 * 120.01786 * 2 1 4 4 C 1.40074 * 117.81793 * 180.23771 * 3 2 1 5 5 C 1.48139 * 121.14476 * 179.78873 * 4 3 2 6 6 O 1.21510 * 120.00090 * 327.06848 * 5 4 3 7 7 N 1.34768 * 119.99893 * 146.79596 * 5 4 3 8 8 C 1.47512 * 118.76002 * 184.61294 * 7 5 4 9 9 C 1.53576 * 111.02879 * 221.60353 * 8 7 5 10 10 C 1.51537 * 109.58330 * 39.97748 * 9 8 7 11 11 O 1.42153 * 108.75347 * 268.60011 * 10 9 8 12 12 C 1.38014 * 119.44068 * 87.22836 * 11 10 9 13 13 H 1.09007 * 109.46894 * 56.57219 * 12 11 10 14 14 C 1.53006 * 109.47116 * 176.56270 * 12 11 10 15 15 N 1.46492 * 109.47263 * 300.00237 * 14 12 11 16 16 C 1.36937 * 120.00275 * 179.97438 * 15 14 12 17 17 H 1.08003 * 119.99431 * 359.97438 * 16 15 14 18 18 C 1.38810 * 120.00456 * 179.97438 * 16 15 14 19 19 N 1.31619 * 119.99540 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00138 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47048 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47186 * 120.00186 * 20 18 16 23 23 H 1.48507 * 109.46956 * 240.00135 * 20 18 16 24 24 C 1.45129 * 118.76074 * 4.34299 * 7 5 4 25 25 C 1.39763 * 117.70594 * 359.51280 * 4 3 2 26 26 N 1.31899 * 119.65363 * 0.25373 * 25 4 3 27 27 N 1.28268 * 122.33089 * 359.97438 * 26 25 4 28 28 H 1.08999 * 109.47153 * 270.26461 * 1 2 3 29 29 H 1.09007 * 109.47101 * 30.25711 * 1 2 3 30 30 H 1.08999 * 109.47554 * 150.25762 * 1 2 3 31 31 H 1.08004 * 121.08975 * 0.02562 * 3 2 1 32 32 H 1.08996 * 109.16440 * 342.00022 * 8 7 5 33 33 H 1.08997 * 109.16627 * 101.25447 * 8 7 5 34 34 H 1.09004 * 109.44864 * 160.00574 * 9 8 7 35 35 H 1.09000 * 109.45322 * 279.93958 * 9 8 7 36 36 H 1.08998 * 109.58841 * 28.37703 * 10 9 8 37 37 H 1.08994 * 109.59046 * 148.67068 * 10 9 8 38 38 H 1.09002 * 109.46592 * 59.99970 * 14 12 11 39 39 H 1.09000 * 109.46866 * 179.97438 * 14 12 11 40 40 H 0.97003 * 120.00141 * 359.97438 * 15 14 12 41 41 H 0.97003 * 119.99922 * 180.02562 * 19 18 16 42 42 H 1.09004 * 109.46301 * 210.76197 * 24 7 5 43 43 H 1.08999 * 109.45395 * 330.71785 * 24 7 5 44 44 H 1.07999 * 120.17178 * 180.22566 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2001 1.1996 0.0000 4 6 3.5998 1.1459 -0.0051 5 6 4.4141 2.3834 -0.0102 6 8 4.0081 3.3755 -0.5823 7 7 5.6027 2.4105 0.6245 8 6 6.3432 3.6846 0.6904 9 6 7.8435 3.4632 0.4485 10 6 8.0348 2.4375 -0.6505 11 8 8.1281 1.1476 -0.0605 12 6 6.9757 0.4289 0.1848 13 1 6.4168 0.3104 -0.7437 14 6 7.3423 -0.9495 0.7386 15 7 8.1655 -1.6654 -0.2391 16 6 8.6166 -2.9281 0.0392 17 1 8.3657 -3.3959 0.9798 18 6 9.3962 -3.6066 -0.8874 19 7 9.7023 -3.0362 -2.0334 20 14 10.0108 -5.3293 -0.5079 21 1 9.5322 -5.7407 0.8363 22 1 9.4938 -6.2755 -1.5290 23 1 11.4957 -5.3410 -0.5291 24 6 6.1031 1.1865 1.2225 25 6 4.2017 -0.1155 0.0006 26 7 3.4482 -1.1981 0.0054 27 7 2.1667 -1.1420 0.0056 28 1 -0.3633 0.0047 1.0276 29 1 -0.3634 0.8877 -0.5179 30 1 -0.3634 -0.8922 -0.5098 31 1 1.6783 2.1452 0.0004 32 1 5.9548 4.3639 -0.0684 33 1 6.2021 4.1300 1.6752 34 1 8.3060 4.4044 0.1511 35 1 8.3099 3.1038 1.3657 36 1 7.1836 2.4676 -1.3307 37 1 8.9499 2.6574 -1.2003 38 1 7.9012 -0.8311 1.6669 39 1 6.4321 -1.5169 0.9327 40 1 8.3912 -1.2450 -1.0837 41 1 10.2467 -3.5105 -2.6811 42 1 6.7065 1.4298 2.0971 43 1 5.2635 0.5600 1.5238 44 1 5.2781 -0.2033 0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200359300.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:13 Heat of formation + Delta-G solvation = 33.105227 kcal Electronic energy + Delta-G solvation = -28032.131210 eV Core-core repulsion = 24180.369308 eV Total energy + Delta-G solvation = -3851.761903 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.85870 -40.36458 -38.78166 -35.69310 -35.37205 -34.12519 -33.82410 -32.55762 -31.08533 -29.32607 -28.31608 -27.15475 -25.76916 -24.73167 -23.89733 -22.86215 -21.59516 -21.19659 -19.75548 -18.55095 -17.73825 -17.28328 -17.03578 -16.74320 -16.03104 -15.77955 -15.46186 -15.28387 -14.87815 -14.40019 -14.13929 -14.06301 -13.69164 -13.42119 -13.22225 -13.17115 -13.12346 -12.73557 -12.57214 -12.46918 -12.26249 -12.00511 -11.46980 -11.11091 -11.00799 -10.83567 -10.79428 -10.72280 -10.46031 -10.33012 -10.00608 -9.87660 -9.72302 -9.70162 -9.57810 -8.87112 -8.84349 -6.89685 -5.71455 -3.00652 0.15706 0.64646 2.32273 2.48094 3.32023 3.48143 3.53644 3.55949 3.66202 3.78675 3.87900 4.21417 4.28085 4.45929 4.54727 4.61958 4.68153 4.73576 4.88950 4.90407 4.99011 5.05495 5.12133 5.21644 5.27999 5.38087 5.42454 5.52596 5.56601 5.59785 5.62472 5.65727 5.71796 5.87275 5.91996 5.98531 6.13310 6.20000 6.45128 6.59694 6.87074 7.64596 7.73818 7.78332 8.45802 8.52629 9.58383 10.12740 10.48608 11.51221 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011145 B = 0.004485 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.676927 B = 6241.848102 C = 8339.939491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.061 3.939 3 C -0.064 4.064 4 C -0.133 4.133 5 C 0.562 3.438 6 O -0.527 6.527 7 N -0.597 5.597 8 C 0.110 3.890 9 C -0.166 4.166 10 C 0.069 3.931 11 O -0.356 6.356 12 C 0.072 3.928 13 H 0.058 0.942 14 C 0.157 3.843 15 N -0.723 5.723 16 C -0.239 4.239 17 H 0.072 0.928 18 C -0.011 4.011 19 N -0.931 5.931 20 Si 0.907 3.093 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.292 1.292 24 C 0.050 3.950 25 C 0.030 3.970 26 N -0.221 5.221 27 N -0.228 5.228 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.158 0.842 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.049 0.951 37 H 0.095 0.905 38 H 0.034 0.966 39 H 0.041 0.959 40 H 0.388 0.612 41 H 0.254 0.746 42 H 0.101 0.899 43 H 0.095 0.905 44 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.980 15.684 6.871 22.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.084 4.084 3 C -0.094 4.094 4 C -0.147 4.147 5 C 0.348 3.652 6 O -0.403 6.403 7 N -0.328 5.328 8 C -0.011 4.011 9 C -0.204 4.204 10 C -0.007 4.007 11 O -0.274 6.274 12 C 0.012 3.988 13 H 0.075 0.925 14 C 0.028 3.972 15 N -0.367 5.367 16 C -0.370 4.370 17 H 0.090 0.910 18 C -0.207 4.207 19 N -0.579 5.579 20 Si 0.738 3.262 21 H -0.205 1.205 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.074 4.074 25 C -0.133 4.133 26 N -0.061 5.061 27 N -0.072 5.072 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.175 0.825 32 H 0.113 0.887 33 H 0.089 0.911 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.067 0.933 37 H 0.113 0.887 38 H 0.052 0.948 39 H 0.058 0.942 40 H 0.222 0.778 41 H 0.064 0.936 42 H 0.119 0.881 43 H 0.113 0.887 44 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -14.021 14.347 6.727 21.158 hybrid contribution 0.348 0.943 -0.179 1.020 sum -13.673 15.289 6.548 21.531 Atomic orbital electron populations 1.20699 0.86931 1.04356 1.03788 1.22962 0.99390 0.89950 0.96075 1.22373 0.92762 1.00558 0.93705 1.21176 0.95280 0.95421 1.02873 1.18109 0.81295 0.86933 0.78822 1.90774 1.70982 1.35038 1.43517 1.47800 1.19366 1.11081 1.54590 1.21941 0.91877 0.84257 1.03027 1.22513 0.94925 1.01164 1.01810 1.22216 1.02324 0.82217 0.93990 1.86503 1.31010 1.29238 1.80623 1.22696 0.87044 0.92953 0.96131 0.92453 1.20780 0.95731 0.86497 0.94147 1.42162 1.60516 1.15762 1.18302 1.19248 1.25396 0.91146 1.01195 0.90985 1.24726 1.00866 0.98623 0.96527 1.69684 1.42549 1.37547 1.08133 0.86120 0.78211 0.84459 0.77415 1.20486 1.21873 1.21948 1.23273 1.00026 0.85676 0.98426 1.26318 1.05393 0.88496 0.93119 1.73276 0.98622 1.26431 1.07789 1.72906 1.02433 1.24815 1.07022 0.89662 0.90112 0.89557 0.82469 0.88697 0.91136 0.89311 0.89790 0.93268 0.88679 0.94817 0.94193 0.77766 0.93614 0.88117 0.88668 0.77572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.70 10.19 36.01 0.37 -0.33 16 2 C 0.06 0.69 6.86 -82.45 -0.57 0.12 16 3 C -0.06 -0.71 9.49 -38.78 -0.37 -1.08 16 4 C -0.13 -1.75 5.41 -104.57 -0.57 -2.31 16 5 C 0.56 7.49 7.44 -12.20 -0.09 7.40 16 6 O -0.53 -8.02 16.17 5.36 0.09 -7.93 16 7 N -0.60 -7.03 2.18 -173.14 -0.38 -7.40 16 8 C 0.11 1.08 6.18 -3.19 -0.02 1.06 16 9 C -0.17 -1.58 5.79 -27.17 -0.16 -1.74 16 10 C 0.07 0.88 6.38 36.42 0.23 1.11 16 11 O -0.36 -5.84 9.19 -26.53 -0.24 -6.08 16 12 C 0.07 1.13 1.67 -25.50 -0.04 1.09 16 13 H 0.06 0.97 6.44 -51.92 -0.33 0.63 16 14 C 0.16 3.02 5.70 -4.04 -0.02 3.00 16 15 N -0.72 -18.25 5.49 -59.91 -0.33 -18.58 16 16 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 17 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 18 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 19 N -0.93 -28.41 13.06 55.49 0.72 -27.68 16 20 Si 0.91 22.62 29.55 -169.99 -5.02 17.59 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 24 C 0.05 0.61 4.41 -3.55 -0.02 0.59 16 25 C 0.03 0.44 8.50 -16.95 -0.14 0.30 16 26 N -0.22 -3.66 11.49 30.78 0.35 -3.31 16 27 N -0.23 -3.39 11.40 33.58 0.38 -3.00 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.40 8.09 -51.93 -0.42 -0.02 16 30 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.16 1.36 8.06 -52.48 -0.42 0.94 16 32 H 0.09 0.99 6.96 -51.93 -0.36 0.62 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.83 8.01 -51.93 -0.42 0.41 16 36 H 0.05 0.65 7.40 -51.93 -0.38 0.27 16 37 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.04 0.76 7.42 -51.93 -0.39 0.37 16 40 H 0.39 10.50 7.53 -40.82 -0.31 10.19 16 41 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.10 1.08 8.11 -51.93 -0.42 0.66 16 43 H 0.10 1.12 4.95 -51.93 -0.26 0.86 16 44 H 0.21 3.14 1.16 -52.49 -0.06 3.08 16 LS Contribution 352.48 15.07 5.31 5.31 Total: -1.00 -34.44 352.48 -6.61 -41.05 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -5.85 Total: 8.09 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -1.64 Total: 1.94 kcal Atomic # 7 Polarization: -60.72 SS G_CDS: 0.75 Total: -59.97 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -0.16 Total: -14.01 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.44 -6.61 -41.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200359300.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.153 kcal (2) G-P(sol) polarization free energy of solvation -34.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds