Wall clock time and date at job start Tue Mar 31 2020 12:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38546 * 120.01786 * 2 1 4 4 C 1.40074 * 117.81793 * 180.23771 * 3 2 1 5 5 C 1.48139 * 121.14476 * 179.78873 * 4 3 2 6 6 O 1.21510 * 120.00090 * 327.06848 * 5 4 3 7 7 N 1.34768 * 119.99893 * 146.79596 * 5 4 3 8 8 C 1.47512 * 118.76002 * 184.61294 * 7 5 4 9 9 C 1.53576 * 111.02879 * 221.60353 * 8 7 5 10 10 C 1.51537 * 109.58330 * 39.97748 * 9 8 7 11 11 O 1.42153 * 108.75347 * 268.60011 * 10 9 8 12 12 C 1.38014 * 119.44068 * 87.22836 * 11 10 9 13 13 H 1.09007 * 109.46894 * 56.57219 * 12 11 10 14 14 C 1.53006 * 109.47116 * 176.56270 * 12 11 10 15 15 N 1.46492 * 109.47263 * 300.00237 * 14 12 11 16 16 C 1.36937 * 120.00275 * 179.97438 * 15 14 12 17 17 H 1.08003 * 119.99431 * 359.97438 * 16 15 14 18 18 C 1.38810 * 120.00456 * 179.97438 * 16 15 14 19 19 N 1.31619 * 119.99540 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00138 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47048 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47186 * 120.00186 * 20 18 16 23 23 H 1.48507 * 109.46956 * 240.00135 * 20 18 16 24 24 C 1.45129 * 118.76074 * 4.34299 * 7 5 4 25 25 C 1.39763 * 117.70594 * 359.51280 * 4 3 2 26 26 N 1.31899 * 119.65363 * 0.25373 * 25 4 3 27 27 N 1.28268 * 122.33089 * 359.97438 * 26 25 4 28 28 H 1.08999 * 109.47153 * 270.26461 * 1 2 3 29 29 H 1.09007 * 109.47101 * 30.25711 * 1 2 3 30 30 H 1.08999 * 109.47554 * 150.25762 * 1 2 3 31 31 H 1.08004 * 121.08975 * 0.02562 * 3 2 1 32 32 H 1.08996 * 109.16440 * 342.00022 * 8 7 5 33 33 H 1.08997 * 109.16627 * 101.25447 * 8 7 5 34 34 H 1.09004 * 109.44864 * 160.00574 * 9 8 7 35 35 H 1.09000 * 109.45322 * 279.93958 * 9 8 7 36 36 H 1.08998 * 109.58841 * 28.37703 * 10 9 8 37 37 H 1.08994 * 109.59046 * 148.67068 * 10 9 8 38 38 H 1.09002 * 109.46592 * 59.99970 * 14 12 11 39 39 H 1.09000 * 109.46866 * 179.97438 * 14 12 11 40 40 H 0.97003 * 120.00141 * 359.97438 * 15 14 12 41 41 H 0.97003 * 119.99922 * 180.02562 * 19 18 16 42 42 H 1.09004 * 109.46301 * 210.76197 * 24 7 5 43 43 H 1.08999 * 109.45395 * 330.71785 * 24 7 5 44 44 H 1.07999 * 120.17178 * 180.22566 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2001 1.1996 0.0000 4 6 3.5998 1.1459 -0.0051 5 6 4.4141 2.3834 -0.0102 6 8 4.0081 3.3755 -0.5823 7 7 5.6027 2.4105 0.6245 8 6 6.3432 3.6846 0.6904 9 6 7.8435 3.4632 0.4485 10 6 8.0348 2.4375 -0.6505 11 8 8.1281 1.1476 -0.0605 12 6 6.9757 0.4289 0.1848 13 1 6.4168 0.3104 -0.7437 14 6 7.3423 -0.9495 0.7386 15 7 8.1655 -1.6654 -0.2391 16 6 8.6166 -2.9281 0.0392 17 1 8.3657 -3.3959 0.9798 18 6 9.3962 -3.6066 -0.8874 19 7 9.7023 -3.0362 -2.0334 20 14 10.0108 -5.3293 -0.5079 21 1 9.5322 -5.7407 0.8363 22 1 9.4938 -6.2755 -1.5290 23 1 11.4957 -5.3410 -0.5291 24 6 6.1031 1.1865 1.2225 25 6 4.2017 -0.1155 0.0006 26 7 3.4482 -1.1981 0.0054 27 7 2.1667 -1.1420 0.0056 28 1 -0.3633 0.0047 1.0276 29 1 -0.3634 0.8877 -0.5179 30 1 -0.3634 -0.8922 -0.5098 31 1 1.6783 2.1452 0.0004 32 1 5.9548 4.3639 -0.0684 33 1 6.2021 4.1300 1.6752 34 1 8.3060 4.4044 0.1511 35 1 8.3099 3.1038 1.3657 36 1 7.1836 2.4676 -1.3307 37 1 8.9499 2.6574 -1.2003 38 1 7.9012 -0.8311 1.6669 39 1 6.4321 -1.5169 0.9327 40 1 8.3912 -1.2450 -1.0837 41 1 10.2467 -3.5105 -2.6811 42 1 6.7065 1.4298 2.0971 43 1 5.2635 0.5600 1.5238 44 1 5.2781 -0.2033 0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200359300.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:12 Heat of formation + Delta-G solvation = 8.352998 kcal Electronic energy + Delta-G solvation = -28033.204547 eV Core-core repulsion = 24180.369308 eV Total energy + Delta-G solvation = -3852.835240 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.88791 -41.40343 -39.92968 -36.85377 -36.72624 -35.34262 -34.96199 -33.79572 -32.71142 -30.67681 -29.19226 -28.17878 -27.14557 -25.95770 -24.92297 -24.49226 -22.81642 -22.32709 -20.74476 -19.60375 -19.25329 -18.79325 -18.06076 -17.82854 -17.07921 -16.84710 -16.72394 -16.46741 -16.14112 -15.92031 -15.17657 -15.06792 -15.01581 -14.81537 -14.55310 -14.28761 -14.00791 -13.89679 -13.66127 -13.39399 -13.27825 -13.16534 -12.83257 -12.77454 -12.46648 -12.14974 -12.05162 -11.95027 -11.80397 -11.74462 -11.53912 -11.37208 -10.96888 -10.83856 -10.74485 -10.65418 -9.89225 -8.97939 -7.91307 -5.20170 -0.84014 -0.32284 1.29647 1.49418 1.50797 1.53859 1.60796 2.30275 2.53475 2.58117 2.81410 2.92350 3.21735 3.33996 3.41761 3.43673 3.67667 3.73540 3.75473 3.82351 3.99414 4.09386 4.11854 4.23033 4.28686 4.33261 4.41576 4.52193 4.55687 4.69568 4.74190 4.77182 4.78490 4.84217 4.96492 5.00714 5.03964 5.15561 5.24467 5.25883 5.52789 5.87871 6.29269 6.60409 6.65360 7.36802 7.49733 8.09833 8.33575 9.32574 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011145 B = 0.004485 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.676927 B = 6241.848102 C = 8339.939491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.068 3.932 3 C -0.052 4.052 4 C -0.142 4.142 5 C 0.563 3.437 6 O -0.547 6.547 7 N -0.591 5.591 8 C 0.107 3.893 9 C -0.154 4.154 10 C 0.063 3.937 11 O -0.384 6.384 12 C 0.084 3.916 13 H 0.040 0.960 14 C 0.155 3.845 15 N -0.737 5.737 16 C -0.241 4.241 17 H 0.080 0.920 18 C -0.075 4.075 19 N -0.970 5.970 20 Si 0.972 3.028 21 H -0.264 1.264 22 H -0.296 1.296 23 H -0.293 1.293 24 C 0.065 3.935 25 C 0.022 3.978 26 N -0.263 5.263 27 N -0.260 5.260 28 H 0.106 0.894 29 H 0.108 0.892 30 H 0.084 0.916 31 H 0.189 0.811 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.117 0.883 35 H 0.086 0.914 36 H 0.038 0.962 37 H 0.099 0.901 38 H 0.041 0.959 39 H 0.046 0.954 40 H 0.375 0.625 41 H 0.250 0.750 42 H 0.122 0.878 43 H 0.100 0.900 44 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.384 17.322 8.560 24.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.078 4.078 3 C -0.081 4.081 4 C -0.156 4.156 5 C 0.350 3.650 6 O -0.425 6.425 7 N -0.322 5.322 8 C -0.013 4.013 9 C -0.192 4.192 10 C -0.013 4.013 11 O -0.303 6.303 12 C 0.024 3.976 13 H 0.057 0.943 14 C 0.028 3.972 15 N -0.380 5.380 16 C -0.373 4.373 17 H 0.098 0.902 18 C -0.267 4.267 19 N -0.621 5.621 20 Si 0.801 3.199 21 H -0.188 1.188 22 H -0.223 1.223 23 H -0.220 1.220 24 C -0.060 4.060 25 C -0.142 4.142 26 N -0.101 5.101 27 N -0.102 5.102 28 H 0.124 0.876 29 H 0.127 0.873 30 H 0.103 0.897 31 H 0.206 0.794 32 H 0.109 0.891 33 H 0.115 0.885 34 H 0.135 0.865 35 H 0.105 0.895 36 H 0.057 0.943 37 H 0.118 0.882 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.207 0.793 41 H 0.058 0.942 42 H 0.140 0.860 43 H 0.118 0.882 44 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -15.441 15.989 8.470 23.786 hybrid contribution 0.692 0.526 -0.705 1.119 sum -14.748 16.515 7.765 23.464 Atomic orbital electron populations 1.20900 0.83592 1.05671 1.05447 1.23643 1.01350 0.89015 0.93744 1.22778 0.91977 1.01745 0.91629 1.21249 0.96359 0.94645 1.03373 1.18130 0.81666 0.86596 0.78580 1.90762 1.71623 1.35653 1.44473 1.47854 1.18969 1.11541 1.53847 1.22151 0.91560 0.83173 1.04412 1.22435 0.95011 1.01223 1.00504 1.22421 1.02187 0.81588 0.95097 1.86429 1.31629 1.31029 1.81173 1.22393 0.87128 0.91774 0.96318 0.94284 1.20912 0.94844 0.88292 0.93176 1.42350 1.61203 1.15509 1.18940 1.19684 1.24280 0.92191 1.01109 0.90246 1.25547 1.01961 1.02550 0.96640 1.69844 1.43891 1.39098 1.09225 0.85087 0.77277 0.79831 0.77667 1.18792 1.22300 1.22033 1.23055 0.99765 0.85603 0.97544 1.26132 1.04908 0.89072 0.94098 1.73165 0.99774 1.27699 1.09504 1.72818 1.01927 1.26820 1.08660 0.87612 0.87340 0.89673 0.79424 0.89065 0.88515 0.86481 0.89526 0.94339 0.88250 0.94097 0.93652 0.79331 0.94160 0.86011 0.88232 0.78543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.09 10.19 71.24 0.73 -0.37 16 2 C 0.07 1.43 6.86 42.63 0.29 1.72 16 3 C -0.05 -1.04 9.49 22.79 0.22 -0.82 16 4 C -0.14 -3.61 5.41 -19.83 -0.11 -3.72 16 5 C 0.56 14.28 7.44 86.87 0.65 14.93 16 6 O -0.55 -15.77 16.17 -3.75 -0.06 -15.83 16 7 N -0.59 -12.97 2.18 -819.99 -1.79 -14.76 16 8 C 0.11 1.82 6.18 86.38 0.53 2.36 16 9 C -0.15 -2.55 5.79 30.31 0.18 -2.38 16 10 C 0.06 1.56 6.38 71.50 0.46 2.02 16 11 O -0.38 -12.64 9.19 -117.85 -1.08 -13.72 16 12 C 0.08 2.66 1.67 31.39 0.05 2.72 16 13 H 0.04 1.40 6.44 -2.38 -0.02 1.38 16 14 C 0.15 6.05 5.70 86.38 0.49 6.54 16 15 N -0.74 -38.24 5.49 -343.46 -1.88 -40.12 16 16 C -0.24 -13.68 9.99 84.03 0.84 -12.84 16 17 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 18 C -0.07 -4.40 5.50 84.86 0.47 -3.93 16 19 N -0.97 -60.87 13.06 21.65 0.28 -60.59 16 20 Si 0.97 47.15 29.55 68.60 2.03 49.18 16 21 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 22 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 23 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 24 C 0.06 1.49 4.41 87.43 0.39 1.88 16 25 C 0.02 0.68 8.50 85.05 0.72 1.40 16 26 N -0.26 -8.92 11.49 -56.53 -0.65 -9.57 16 27 N -0.26 -7.70 11.40 -47.68 -0.54 -8.25 16 28 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.11 0.65 8.09 -2.38 -0.02 0.63 16 30 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.19 2.58 8.06 -2.91 -0.02 2.55 16 32 H 0.09 1.68 6.96 -2.39 -0.02 1.66 16 33 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.12 1.33 8.14 -2.38 -0.02 1.31 16 35 H 0.09 1.46 8.01 -2.39 -0.02 1.44 16 36 H 0.04 1.02 7.40 -2.39 -0.02 1.01 16 37 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.05 1.75 7.42 -2.39 -0.02 1.73 16 40 H 0.37 21.13 7.53 -92.71 -0.70 20.43 16 41 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 42 H 0.12 2.32 8.11 -2.39 -0.02 2.30 16 43 H 0.10 2.26 4.95 -2.39 -0.01 2.25 16 44 H 0.20 6.18 1.16 -2.92 0.00 6.18 16 Total: -1.00 -76.72 352.48 2.55 -74.18 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: 0.35 Total: 29.98 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: 5.90 Total: 9.50 kcal Atomic # 7 Polarization: -128.70 SS G_CDS: -4.58 Total: -133.28 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -1.14 Total: -29.56 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.18 kcal Total: -76.72 2.55 -74.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200359300.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.529 kcal (2) G-P(sol) polarization free energy of solvation -76.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds