Wall clock time and date at job start Tue Mar 31 2020 12:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38817 * 120.41996 * 2 1 4 4 C 1.38773 * 118.50491 * 179.97438 * 3 2 1 5 5 N 1.32117 * 119.17091 * 359.97438 * 4 3 2 6 6 C 1.32449 * 120.76524 * 0.02562 * 5 4 3 7 7 C 1.48544 * 119.18593 * 179.97438 * 6 5 4 8 8 O 1.21468 * 120.00042 * 189.21548 * 7 6 5 9 9 N 1.34777 * 119.99573 * 9.21964 * 7 6 5 10 10 C 1.47512 * 118.75138 * 179.53565 * 9 7 6 11 11 C 1.53574 * 111.02883 * 138.34616 * 10 9 7 12 12 C 1.51537 * 109.57813 * 320.01916 * 11 10 9 13 13 O 1.42153 * 108.75276 * 91.40256 * 12 11 10 14 14 C 1.38017 * 119.44450 * 272.77006 * 13 12 11 15 15 H 1.09004 * 109.46669 * 303.42621 * 14 13 12 16 16 C 1.52995 * 109.47436 * 183.42919 * 14 13 12 17 17 N 1.46500 * 109.46756 * 64.98815 * 16 14 13 18 18 C 1.36940 * 119.99595 * 179.72487 * 17 16 14 19 19 H 1.07998 * 120.00459 * 0.27699 * 18 17 16 20 20 C 1.38820 * 119.99753 * 180.27128 * 18 17 16 21 21 N 1.31614 * 119.99863 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99898 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47105 * 0.02562 * 22 20 18 24 24 H 1.48494 * 109.47333 * 120.00291 * 22 20 18 25 25 H 1.48506 * 109.47294 * 240.00451 * 22 20 18 26 26 C 1.45121 * 118.76269 * 359.51151 * 9 7 6 27 27 N 1.32103 * 120.41445 * 180.22935 * 2 1 3 28 28 H 1.08997 * 109.47174 * 90.00459 * 1 2 3 29 29 H 1.08999 * 109.47640 * 210.00278 * 1 2 3 30 30 H 1.09007 * 109.46953 * 330.00551 * 1 2 3 31 31 H 1.08000 * 120.74896 * 359.95047 * 3 2 1 32 32 H 1.08007 * 120.41503 * 180.02562 * 4 3 2 33 33 H 1.09002 * 109.16477 * 258.74100 * 10 9 7 34 34 H 1.08998 * 109.16893 * 17.94740 * 10 9 7 35 35 H 1.08997 * 109.45342 * 80.05789 * 11 10 9 36 36 H 1.08999 * 109.45203 * 199.98892 * 11 10 9 37 37 H 1.08996 * 109.58590 * 211.17829 * 12 11 10 38 38 H 1.08997 * 109.59235 * 331.62171 * 12 11 10 39 39 H 1.08998 * 109.47021 * 304.98792 * 16 14 13 40 40 H 1.08992 * 109.47152 * 184.98654 * 16 14 13 41 41 H 0.97005 * 120.00593 * 0.02562 * 17 16 14 42 42 H 0.96999 * 119.99781 * 179.97438 * 21 20 18 43 43 H 1.09000 * 109.45831 * 149.28701 * 26 9 7 44 44 H 1.09001 * 109.44239 * 29.31921 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1971 0.0000 4 6 3.5969 1.1507 0.0005 5 7 4.2019 -0.0238 0.0016 6 6 3.5005 -1.1473 0.0015 7 6 4.2169 -2.4485 0.0021 8 8 3.6002 -3.4814 -0.1663 9 7 5.5511 -2.4831 0.1897 10 6 6.2332 -3.7910 0.1955 11 6 7.5596 -3.7242 -0.5756 12 6 7.3821 -2.8761 -1.8188 13 8 7.7105 -1.5293 -1.5040 14 6 6.7365 -0.6948 -0.9944 15 1 5.8917 -0.6598 -1.6824 16 6 7.3107 0.7126 -0.8201 17 7 7.6492 1.2679 -2.1329 18 6 8.1774 2.5277 -2.2278 19 1 8.3487 3.1102 -1.3346 20 6 8.4929 3.0561 -3.4721 21 7 8.2839 2.3463 -4.5606 22 14 9.2141 4.7743 -3.6016 23 1 9.3505 5.3576 -2.2427 24 1 10.5503 4.7032 -4.2455 25 1 8.3154 5.6281 -4.4193 26 6 6.2624 -1.2322 0.3777 27 7 2.1758 -1.1392 -0.0046 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8901 0.5138 31 1 1.6891 2.1432 -0.0008 32 1 4.1745 2.0633 0.0010 33 1 6.4326 -4.0860 1.2257 34 1 5.5858 -4.5343 -0.2698 35 1 8.3268 -3.2814 0.0595 36 1 7.8634 -4.7307 -0.8632 37 1 8.0429 -3.2389 -2.6061 38 1 6.3463 -2.9309 -2.1539 39 1 8.2082 0.6650 -0.2033 40 1 6.5706 1.3496 -0.3360 41 1 7.4951 0.7449 -2.9352 42 1 8.5040 2.7157 -5.4301 43 1 7.1267 -1.3991 1.0206 44 1 5.5986 -0.5038 0.8434 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200388110.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:22 Heat of formation + Delta-G solvation = 18.772918 kcal Electronic energy + Delta-G solvation = -28109.756459 eV Core-core repulsion = 24257.373061 eV Total energy + Delta-G solvation = -3852.383398 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.63595 -40.04085 -38.39104 -35.51779 -35.05437 -34.31417 -33.11706 -32.58395 -30.93767 -28.89880 -28.68827 -26.84071 -25.72998 -24.61094 -23.31646 -22.65184 -21.56764 -20.88052 -19.77263 -17.97618 -17.40985 -17.17326 -16.69331 -16.39683 -16.05164 -15.77045 -15.29024 -15.19692 -14.56183 -14.42973 -14.17886 -13.86820 -13.54325 -13.38996 -13.13743 -13.09453 -12.99663 -12.63302 -12.47359 -12.21991 -12.17254 -11.78343 -11.30742 -10.99208 -10.91548 -10.80743 -10.73664 -10.62174 -10.26025 -10.01521 -9.92454 -9.71489 -9.67164 -9.32406 -9.15542 -8.82845 -8.44698 -6.83111 -5.69692 -2.97406 0.30437 0.86655 2.50851 2.57411 3.45562 3.50773 3.53517 3.62890 3.75909 3.85779 4.09362 4.26484 4.58131 4.63962 4.78680 4.83701 4.90510 4.97834 5.16635 5.17823 5.23483 5.32176 5.39612 5.48674 5.50656 5.61507 5.63828 5.66218 5.71349 5.79458 5.94672 6.02348 6.11756 6.21366 6.32395 6.39823 6.49945 6.73965 6.75259 6.87263 7.16077 7.69529 7.74114 8.02464 8.13729 8.48697 9.60061 10.20494 10.55645 11.53339 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010982 B = 0.004637 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.905094 B = 6036.884522 C = 8073.567589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.169 3.831 3 C -0.207 4.207 4 C 0.150 3.850 5 N -0.478 5.478 6 C 0.284 3.716 7 C 0.579 3.421 8 O -0.514 6.514 9 N -0.585 5.585 10 C 0.111 3.889 11 C -0.164 4.164 12 C 0.074 3.926 13 O -0.373 6.373 14 C 0.101 3.899 15 H 0.047 0.953 16 C 0.173 3.827 17 N -0.727 5.727 18 C -0.235 4.235 19 H 0.070 0.930 20 C -0.015 4.015 21 N -0.932 5.932 22 Si 0.904 3.096 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.293 1.293 26 C 0.055 3.945 27 N -0.473 5.473 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.153 0.847 32 H 0.182 0.818 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.045 0.955 39 H 0.023 0.977 40 H 0.036 0.964 41 H 0.386 0.614 42 H 0.253 0.747 43 H 0.075 0.925 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.979 -7.546 12.591 18.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.022 3.978 3 C -0.229 4.229 4 C -0.014 4.014 5 N -0.196 5.196 6 C 0.014 3.986 7 C 0.363 3.637 8 O -0.387 6.387 9 N -0.318 5.318 10 C -0.011 4.011 11 C -0.202 4.202 12 C -0.003 4.003 13 O -0.291 6.291 14 C 0.041 3.959 15 H 0.065 0.935 16 C 0.044 3.956 17 N -0.371 5.371 18 C -0.366 4.366 19 H 0.088 0.912 20 C -0.211 4.211 21 N -0.581 5.581 22 Si 0.736 3.264 23 H -0.206 1.206 24 H -0.220 1.220 25 H -0.220 1.220 26 C -0.068 4.068 27 N -0.189 5.189 28 H 0.106 0.894 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.171 0.829 32 H 0.199 0.801 33 H 0.087 0.913 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.064 0.936 39 H 0.041 0.959 40 H 0.054 0.946 41 H 0.219 0.781 42 H 0.063 0.937 43 H 0.093 0.907 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.578 -8.796 12.536 19.198 hybrid contribution -0.223 1.598 -0.447 1.675 sum -11.801 -7.198 12.089 18.364 Atomic orbital electron populations 1.20802 0.87340 1.04172 1.03995 1.21850 0.97872 0.87816 0.90261 1.23042 0.96748 1.00657 1.02453 1.23647 0.92283 0.96758 0.88704 1.68980 1.38997 0.98868 1.12737 1.22796 0.87479 0.93059 0.95244 1.17447 0.82151 0.86113 0.78019 1.90766 1.66658 1.32767 1.48491 1.47771 1.05981 1.08446 1.69588 1.21915 0.94228 0.84019 1.00928 1.22494 0.97099 1.01765 0.98881 1.22098 1.00383 0.82254 0.95573 1.86415 1.39038 1.20782 1.82838 1.22116 0.90635 0.90888 0.92267 0.93531 1.20535 0.96709 0.88111 0.90208 1.42270 1.76207 1.16368 1.02246 1.19264 1.33421 0.91440 0.92472 0.91180 1.24723 1.02468 0.98394 0.95493 1.69687 1.54345 1.36931 0.97122 0.86152 0.78544 0.84424 0.77283 1.20594 1.21961 1.22046 1.23435 0.98262 0.85157 0.99974 1.68053 1.08451 1.30532 1.11849 0.89407 0.89765 0.89867 0.82886 0.80061 0.91335 0.89048 0.89978 0.89635 0.89324 0.93647 0.95889 0.94636 0.78076 0.93698 0.90685 0.84852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.22 36.01 0.37 -0.39 16 2 C 0.17 1.87 6.82 -82.26 -0.56 1.30 16 3 C -0.21 -1.96 9.87 -39.17 -0.39 -2.35 16 4 C 0.15 1.71 11.30 -17.23 -0.19 1.52 16 5 N -0.48 -6.68 4.77 -11.12 -0.05 -6.73 16 6 C 0.28 4.37 7.42 -157.07 -1.17 3.20 16 7 C 0.58 9.43 7.66 -12.01 -0.09 9.33 16 8 O -0.51 -9.48 16.18 5.39 0.09 -9.39 16 9 N -0.59 -8.37 2.19 -173.32 -0.38 -8.75 16 10 C 0.11 1.33 6.16 -3.19 -0.02 1.31 16 11 C -0.16 -1.88 5.79 -27.17 -0.16 -2.04 16 12 C 0.07 1.09 6.38 36.42 0.23 1.32 16 13 O -0.37 -6.88 9.38 -26.54 -0.25 -7.13 16 14 C 0.10 1.78 1.96 -25.78 -0.05 1.73 16 15 H 0.05 0.92 7.53 -51.93 -0.39 0.53 16 16 C 0.17 3.48 5.92 -4.04 -0.02 3.46 16 17 N -0.73 -18.73 5.54 -59.91 -0.33 -19.06 16 18 C -0.23 -6.54 9.99 -15.05 -0.15 -6.69 16 19 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 20 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 21 N -0.93 -28.61 13.06 55.49 0.72 -27.89 16 22 Si 0.90 22.33 29.55 -169.99 -5.02 17.31 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 C 0.06 0.79 4.42 -3.83 -0.02 0.77 16 27 N -0.47 -6.97 10.08 -7.37 -0.07 -7.05 16 28 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.38 8.10 -51.93 -0.42 -0.04 16 31 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.18 1.72 8.06 -52.48 -0.42 1.30 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.09 1.15 6.99 -51.93 -0.36 0.78 16 35 H 0.08 0.97 8.01 -51.93 -0.42 0.55 16 36 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.05 0.71 7.40 -51.93 -0.38 0.33 16 39 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.39 10.82 7.65 -40.82 -0.31 10.51 16 42 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.07 1.00 8.11 -51.93 -0.42 0.58 16 44 H 0.13 1.86 4.71 -70.48 -0.33 1.53 16 LS Contribution 359.23 15.07 5.41 5.41 Total: -1.00 -35.46 359.23 -8.59 -44.05 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -6.39 Total: 7.27 kcal Atomic # 6 Polarization: 14.26 SS G_CDS: -2.31 Total: 11.95 kcal Atomic # 7 Polarization: -69.37 SS G_CDS: -0.11 Total: -69.48 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.16 Total: -16.52 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.46 -8.59 -44.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200388110.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.825 kcal (2) G-P(sol) polarization free energy of solvation -35.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds