Wall clock time and date at job start Tue Mar 31 2020 12:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38817 * 120.41996 * 2 1 4 4 C 1.38773 * 118.50491 * 179.97438 * 3 2 1 5 5 N 1.32117 * 119.17091 * 359.97438 * 4 3 2 6 6 C 1.32449 * 120.76524 * 0.02562 * 5 4 3 7 7 C 1.48544 * 119.18593 * 179.97438 * 6 5 4 8 8 O 1.21468 * 120.00042 * 189.21548 * 7 6 5 9 9 N 1.34777 * 119.99573 * 9.21964 * 7 6 5 10 10 C 1.47512 * 118.75138 * 179.53565 * 9 7 6 11 11 C 1.53574 * 111.02883 * 138.34616 * 10 9 7 12 12 C 1.51537 * 109.57813 * 320.01916 * 11 10 9 13 13 O 1.42153 * 108.75276 * 91.40256 * 12 11 10 14 14 C 1.38017 * 119.44450 * 272.77006 * 13 12 11 15 15 H 1.09004 * 109.46669 * 303.42621 * 14 13 12 16 16 C 1.52995 * 109.47436 * 183.42919 * 14 13 12 17 17 N 1.46500 * 109.46756 * 64.98815 * 16 14 13 18 18 C 1.36940 * 119.99595 * 179.72487 * 17 16 14 19 19 H 1.07998 * 120.00459 * 0.27699 * 18 17 16 20 20 C 1.38820 * 119.99753 * 180.27128 * 18 17 16 21 21 N 1.31614 * 119.99863 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99898 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47105 * 0.02562 * 22 20 18 24 24 H 1.48494 * 109.47333 * 120.00291 * 22 20 18 25 25 H 1.48506 * 109.47294 * 240.00451 * 22 20 18 26 26 C 1.45121 * 118.76269 * 359.51151 * 9 7 6 27 27 N 1.32103 * 120.41445 * 180.22935 * 2 1 3 28 28 H 1.08997 * 109.47174 * 90.00459 * 1 2 3 29 29 H 1.08999 * 109.47640 * 210.00278 * 1 2 3 30 30 H 1.09007 * 109.46953 * 330.00551 * 1 2 3 31 31 H 1.08000 * 120.74896 * 359.95047 * 3 2 1 32 32 H 1.08007 * 120.41503 * 180.02562 * 4 3 2 33 33 H 1.09002 * 109.16477 * 258.74100 * 10 9 7 34 34 H 1.08998 * 109.16893 * 17.94740 * 10 9 7 35 35 H 1.08997 * 109.45342 * 80.05789 * 11 10 9 36 36 H 1.08999 * 109.45203 * 199.98892 * 11 10 9 37 37 H 1.08996 * 109.58590 * 211.17829 * 12 11 10 38 38 H 1.08997 * 109.59235 * 331.62171 * 12 11 10 39 39 H 1.08998 * 109.47021 * 304.98792 * 16 14 13 40 40 H 1.08992 * 109.47152 * 184.98654 * 16 14 13 41 41 H 0.97005 * 120.00593 * 0.02562 * 17 16 14 42 42 H 0.96999 * 119.99781 * 179.97438 * 21 20 18 43 43 H 1.09000 * 109.45831 * 149.28701 * 26 9 7 44 44 H 1.09001 * 109.44239 * 29.31921 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1971 0.0000 4 6 3.5969 1.1507 0.0005 5 7 4.2019 -0.0238 0.0016 6 6 3.5005 -1.1473 0.0015 7 6 4.2169 -2.4485 0.0021 8 8 3.6002 -3.4814 -0.1663 9 7 5.5511 -2.4831 0.1897 10 6 6.2332 -3.7910 0.1955 11 6 7.5596 -3.7242 -0.5756 12 6 7.3821 -2.8761 -1.8188 13 8 7.7105 -1.5293 -1.5040 14 6 6.7365 -0.6948 -0.9944 15 1 5.8917 -0.6598 -1.6824 16 6 7.3107 0.7126 -0.8201 17 7 7.6492 1.2679 -2.1329 18 6 8.1774 2.5277 -2.2278 19 1 8.3487 3.1102 -1.3346 20 6 8.4929 3.0561 -3.4721 21 7 8.2839 2.3463 -4.5606 22 14 9.2141 4.7743 -3.6016 23 1 9.3505 5.3576 -2.2427 24 1 10.5503 4.7032 -4.2455 25 1 8.3154 5.6281 -4.4193 26 6 6.2624 -1.2322 0.3777 27 7 2.1758 -1.1392 -0.0046 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8901 0.5138 31 1 1.6891 2.1432 -0.0008 32 1 4.1745 2.0633 0.0010 33 1 6.4326 -4.0860 1.2257 34 1 5.5858 -4.5343 -0.2698 35 1 8.3268 -3.2814 0.0595 36 1 7.8634 -4.7307 -0.8632 37 1 8.0429 -3.2389 -2.6061 38 1 6.3463 -2.9309 -2.1539 39 1 8.2082 0.6650 -0.2033 40 1 6.5706 1.3496 -0.3360 41 1 7.4951 0.7449 -2.9352 42 1 8.5040 2.7157 -5.4301 43 1 7.1267 -1.3991 1.0206 44 1 5.5986 -0.5038 0.8434 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200388110.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:21 Heat of formation + Delta-G solvation = -5.393228 kcal Electronic energy + Delta-G solvation = -28110.804382 eV Core-core repulsion = 24257.373061 eV Total energy + Delta-G solvation = -3853.431321 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -42.64403 -41.17240 -39.69989 -36.76556 -36.53560 -35.54274 -34.38912 -33.67013 -32.69056 -30.21703 -29.64406 -27.94107 -27.17114 -25.95589 -24.49079 -24.06387 -22.75424 -22.29689 -20.85535 -19.18964 -18.96491 -18.54625 -17.89242 -17.64676 -16.96385 -16.94386 -16.64846 -16.43064 -16.09066 -15.64998 -15.32848 -15.08987 -14.83816 -14.72444 -14.52251 -14.29377 -13.95970 -13.77223 -13.56616 -13.38016 -13.20155 -13.16393 -12.78923 -12.71298 -12.43178 -12.07913 -11.99721 -11.88106 -11.78000 -11.67989 -11.48397 -11.06720 -10.92000 -10.60126 -10.58126 -10.16472 -9.66597 -8.92396 -7.87779 -5.16220 -0.65692 -0.01108 1.39556 1.50691 1.52157 1.52785 1.62441 2.59944 2.62872 2.72749 2.80087 3.00620 3.46888 3.50139 3.64254 3.75014 3.83631 4.00906 4.06336 4.11179 4.15413 4.26485 4.33675 4.46013 4.47978 4.56957 4.60955 4.70987 4.71502 4.76156 4.77712 4.91188 4.99575 5.05577 5.11735 5.22278 5.26624 5.38243 5.44789 5.55751 5.87086 6.00351 6.32633 6.66076 6.79489 6.93799 7.39056 8.15493 8.39448 9.36732 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010982 B = 0.004637 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.905094 B = 6036.884522 C = 8073.567589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.155 3.845 3 C -0.183 4.183 4 C 0.132 3.868 5 N -0.491 5.491 6 C 0.258 3.742 7 C 0.572 3.428 8 O -0.548 6.548 9 N -0.581 5.581 10 C 0.106 3.894 11 C -0.150 4.150 12 C 0.069 3.931 13 O -0.400 6.400 14 C 0.115 3.885 15 H 0.019 0.981 16 C 0.172 3.828 17 N -0.741 5.741 18 C -0.234 4.234 19 H 0.083 0.917 20 C -0.080 4.080 21 N -0.975 5.975 22 Si 0.974 3.026 23 H -0.260 1.260 24 H -0.299 1.299 25 H -0.295 1.295 26 C 0.069 3.931 27 N -0.503 5.503 28 H 0.095 0.905 29 H 0.077 0.923 30 H 0.117 0.883 31 H 0.197 0.803 32 H 0.200 0.800 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.116 0.884 37 H 0.096 0.904 38 H 0.028 0.972 39 H 0.024 0.976 40 H 0.057 0.943 41 H 0.369 0.631 42 H 0.248 0.752 43 H 0.091 0.909 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.364 -6.215 14.403 19.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.009 3.991 3 C -0.205 4.205 4 C -0.031 4.031 5 N -0.210 5.210 6 C -0.011 4.011 7 C 0.357 3.643 8 O -0.424 6.424 9 N -0.313 5.313 10 C -0.015 4.015 11 C -0.188 4.188 12 C -0.007 4.007 13 O -0.319 6.319 14 C 0.055 3.945 15 H 0.037 0.963 16 C 0.046 3.954 17 N -0.383 5.383 18 C -0.366 4.366 19 H 0.101 0.899 20 C -0.271 4.271 21 N -0.626 5.626 22 Si 0.803 3.197 23 H -0.184 1.184 24 H -0.227 1.227 25 H -0.222 1.222 26 C -0.055 4.055 27 N -0.220 5.220 28 H 0.114 0.886 29 H 0.096 0.904 30 H 0.135 0.865 31 H 0.214 0.786 32 H 0.217 0.783 33 H 0.111 0.889 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.134 0.866 37 H 0.114 0.886 38 H 0.047 0.953 39 H 0.042 0.958 40 H 0.074 0.926 41 H 0.200 0.800 42 H 0.057 0.943 43 H 0.109 0.891 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -11.958 -7.460 14.412 20.158 hybrid contribution -0.169 1.187 -1.001 1.562 sum -12.127 -6.273 13.411 19.138 Atomic orbital electron populations 1.20938 0.84626 1.05537 1.04837 1.22583 0.99621 0.87434 0.89493 1.23468 0.95945 1.01844 0.99197 1.24096 0.93703 0.96432 0.88905 1.68844 1.39536 0.99353 1.13241 1.22593 0.87981 0.93008 0.97548 1.17772 0.82672 0.86372 0.77483 1.90724 1.67400 1.33951 1.50296 1.47856 1.05569 1.09175 1.68669 1.22121 0.94052 0.82869 1.02445 1.22405 0.96763 1.02668 0.96988 1.22287 0.99540 0.81250 0.97663 1.86345 1.39707 1.22494 1.83388 1.21840 0.89204 0.89953 0.93493 0.96271 1.20701 0.97131 0.89835 0.87769 1.42492 1.76216 1.15901 1.03643 1.19729 1.31894 0.92159 0.92830 0.89902 1.25573 1.03839 1.02446 0.95267 1.69867 1.56383 1.38907 0.97460 0.85061 0.76957 0.79763 0.77915 1.18426 1.22680 1.22190 1.23262 0.98842 0.85473 0.97909 1.68040 1.08466 1.32729 1.12805 0.88625 0.90414 0.86497 0.78620 0.78304 0.88872 0.89783 0.89596 0.86561 0.88574 0.95336 0.95804 0.92573 0.79978 0.94330 0.89083 0.84138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.24 10.22 71.24 0.73 -0.52 16 2 C 0.15 3.20 6.82 42.66 0.29 3.49 16 3 C -0.18 -3.00 9.87 22.54 0.22 -2.78 16 4 C 0.13 2.80 11.30 84.78 0.96 3.76 16 5 N -0.49 -13.60 4.77 -189.10 -0.90 -14.50 16 6 C 0.26 8.07 7.42 137.69 1.02 9.10 16 7 C 0.57 19.15 7.66 86.99 0.67 19.81 16 8 O -0.55 -20.99 16.18 -3.61 -0.06 -21.05 16 9 N -0.58 -16.57 2.19 -820.57 -1.80 -18.37 16 10 C 0.11 2.44 6.16 86.38 0.53 2.97 16 11 C -0.15 -3.21 5.79 30.31 0.18 -3.04 16 12 C 0.07 2.04 6.38 71.50 0.46 2.49 16 13 O -0.40 -14.91 9.38 -117.89 -1.11 -16.02 16 14 C 0.11 4.09 1.96 31.21 0.06 4.15 16 15 H 0.02 0.80 7.53 -2.38 -0.02 0.78 16 16 C 0.17 6.88 5.92 86.38 0.51 7.39 16 17 N -0.74 -38.45 5.54 -343.46 -1.90 -40.35 16 18 C -0.23 -12.96 9.99 84.04 0.84 -12.12 16 19 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 20 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 21 N -0.97 -60.98 13.06 21.65 0.28 -60.70 16 22 Si 0.97 45.82 29.55 68.60 2.03 47.84 16 23 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 24 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 25 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 26 C 0.07 1.92 4.42 87.25 0.39 2.31 16 27 N -0.50 -14.96 10.08 -177.23 -1.79 -16.75 16 28 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.12 0.62 8.10 -2.38 -0.02 0.60 16 31 H 0.20 1.43 8.06 -2.91 -0.02 1.40 16 32 H 0.20 3.35 8.06 -2.91 -0.02 3.33 16 33 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.08 2.10 6.99 -2.39 -0.02 2.08 16 35 H 0.09 1.83 8.01 -2.39 -0.02 1.81 16 36 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 38 H 0.03 0.93 7.40 -2.39 -0.02 0.91 16 39 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.37 21.33 7.65 -92.70 -0.71 20.62 16 42 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 43 H 0.09 2.27 8.11 -2.39 -0.02 2.25 16 44 H 0.14 3.82 4.71 -39.01 -0.18 3.64 16 Total: -1.00 -79.35 359.23 2.21 -77.14 By element: Atomic # 1 Polarization: 29.71 SS G_CDS: 0.14 Total: 29.85 kcal Atomic # 6 Polarization: 25.59 SS G_CDS: 7.32 Total: 32.90 kcal Atomic # 7 Polarization: -144.56 SS G_CDS: -6.11 Total: -150.66 kcal Atomic # 8 Polarization: -35.91 SS G_CDS: -1.16 Total: -37.07 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.84 kcal Total: -79.35 2.21 -77.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200388110.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.746 kcal (2) G-P(sol) polarization free energy of solvation -79.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds