Wall clock time and date at job start Tue Mar 31 2020 12:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38818 * 120.41745 * 2 1 4 4 C 1.38784 * 118.50749 * 180.02562 * 3 2 1 5 5 N 1.32128 * 119.16318 * 359.73514 * 4 3 2 6 6 C 1.32441 * 120.76872 * 0.54202 * 5 4 3 7 7 C 1.48541 * 119.18880 * 179.71897 * 6 5 4 8 8 O 1.21464 * 120.00181 * 172.20072 * 7 6 5 9 9 N 1.34779 * 119.99337 * 352.20610 * 7 6 5 10 10 C 1.47519 * 118.75206 * 173.78386 * 9 7 6 11 11 C 1.53567 * 111.02253 * 221.62275 * 10 9 7 12 12 C 1.51537 * 109.58541 * 39.97953 * 11 10 9 13 13 O 1.42148 * 108.74967 * 268.59701 * 12 11 10 14 14 C 1.38007 * 119.44217 * 87.23650 * 13 12 11 15 15 H 1.08997 * 109.47355 * 56.56508 * 14 13 12 16 16 C 1.53005 * 109.47263 * 176.56147 * 14 13 12 17 17 N 1.46499 * 109.47020 * 300.00254 * 16 14 13 18 18 C 1.36933 * 119.99834 * 180.02562 * 17 16 14 19 19 H 1.08000 * 120.00451 * 359.97438 * 18 17 16 20 20 C 1.38813 * 119.99764 * 179.97438 * 18 17 16 21 21 N 1.31614 * 120.00205 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99849 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47234 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47062 * 119.99703 * 22 20 18 25 25 H 1.48501 * 109.47180 * 239.99832 * 22 20 18 26 26 C 1.45122 * 118.76035 * 353.77918 * 9 7 6 27 27 N 1.32100 * 120.41727 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.47673 * 269.97498 * 1 2 3 29 29 H 1.09002 * 109.47373 * 29.97815 * 1 2 3 30 30 H 1.08999 * 109.47109 * 149.97959 * 1 2 3 31 31 H 1.08001 * 120.74777 * 0.04457 * 3 2 1 32 32 H 1.07994 * 120.41772 * 179.97438 * 4 3 2 33 33 H 1.08999 * 109.16878 * 101.22417 * 10 9 7 34 34 H 1.08997 * 109.16658 * 342.02171 * 10 9 7 35 35 H 1.08996 * 109.45817 * 279.94137 * 11 10 9 36 36 H 1.09004 * 109.45323 * 160.01164 * 11 10 9 37 37 H 1.09001 * 109.59081 * 28.37792 * 12 11 10 38 38 H 1.09007 * 109.59182 * 148.66644 * 12 11 10 39 39 H 1.09001 * 109.47093 * 60.00028 * 16 14 13 40 40 H 1.09001 * 109.47124 * 179.97438 * 16 14 13 41 41 H 0.97001 * 120.00097 * 359.97438 * 17 16 14 42 42 H 0.97003 * 119.99914 * 179.97438 * 21 20 18 43 43 H 1.09002 * 109.45459 * 330.70151 * 26 9 7 44 44 H 1.08997 * 109.45798 * 210.74764 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2098 1.1971 0.0000 4 6 3.5968 1.1509 -0.0005 5 7 4.2019 -0.0237 0.0043 6 6 3.5005 -1.1472 -0.0012 7 6 4.2169 -2.4484 -0.0018 8 8 3.5964 -3.4834 0.1360 9 7 5.5556 -2.4805 -0.1552 10 6 6.2553 -3.7714 -0.0133 11 6 7.5624 -3.6056 0.7756 12 6 7.3446 -2.6389 1.9221 13 8 7.6619 -1.3260 1.4792 14 6 6.6887 -0.5630 0.8666 15 1 5.8279 -0.4720 1.5290 16 6 7.2476 0.8286 0.5628 17 7 7.6590 1.4731 1.8124 18 6 8.1925 2.7340 1.7891 19 1 8.3104 3.2532 0.8494 20 6 8.5817 3.3449 2.9732 21 7 8.4376 2.7125 4.1184 22 14 9.3102 5.0648 2.9413 23 1 9.3657 5.5530 1.5400 24 1 8.4622 5.9767 3.7504 25 1 10.6824 5.0318 3.5082 26 6 6.2540 -1.2439 -0.4538 27 7 2.1757 -1.1392 -0.0005 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5141 31 1 1.6889 2.1432 0.0007 32 1 4.1743 2.0634 -0.0010 33 1 6.4826 -4.1660 -1.0036 34 1 5.6075 -4.4739 0.5108 35 1 8.3381 -3.2173 0.1157 36 1 7.8732 -4.5729 1.1705 37 1 6.3022 -2.6760 2.2384 38 1 7.9899 -2.9112 2.7574 39 1 8.1085 0.7377 -0.0996 40 1 6.4791 1.4310 0.0786 41 1 7.5527 1.0070 2.6564 42 1 8.7099 3.1393 4.9458 43 1 5.5915 -0.5769 -1.0055 44 1 7.1350 -1.4612 -1.0576 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200388111.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:25 Heat of formation + Delta-G solvation = 18.528682 kcal Electronic energy + Delta-G solvation = -28169.717589 eV Core-core repulsion = 24317.323600 eV Total energy + Delta-G solvation = -3852.393989 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.62071 -40.03208 -38.40222 -35.49695 -35.05912 -34.28787 -33.10685 -32.57852 -30.92973 -28.87516 -28.69424 -26.84646 -25.71424 -24.61639 -23.29238 -22.67178 -21.56065 -20.85021 -19.74315 -17.95353 -17.45206 -17.16276 -16.72512 -16.38013 -15.98625 -15.75666 -15.30675 -15.16579 -14.56310 -14.41562 -14.18701 -13.82342 -13.49755 -13.41834 -13.13771 -13.07940 -12.99608 -12.62375 -12.46764 -12.22288 -12.13329 -11.74532 -11.29602 -11.05566 -10.91519 -10.80613 -10.72661 -10.62718 -10.23823 -10.02584 -9.92802 -9.69451 -9.64829 -9.35088 -9.17146 -8.82337 -8.47589 -6.82424 -5.69375 -2.96957 0.31505 0.88922 2.49139 2.58725 3.45616 3.50919 3.53574 3.64495 3.76661 3.86908 4.09920 4.28415 4.59238 4.64541 4.78889 4.85842 4.90608 4.99000 5.15876 5.19250 5.23948 5.30941 5.39375 5.49375 5.51351 5.61769 5.63907 5.66894 5.71280 5.77694 5.95140 6.04322 6.12033 6.22789 6.27371 6.39399 6.47180 6.74662 6.76727 6.88351 7.15367 7.70537 7.74232 8.02295 8.15174 8.49164 9.60626 10.21456 10.56872 11.53580 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011258 B = 0.004632 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.493668 B = 6043.361784 C = 8045.544265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.167 3.833 3 C -0.206 4.206 4 C 0.151 3.849 5 N -0.478 5.478 6 C 0.281 3.719 7 C 0.580 3.420 8 O -0.513 6.513 9 N -0.587 5.587 10 C 0.113 3.887 11 C -0.165 4.165 12 C 0.074 3.926 13 O -0.372 6.372 14 C 0.102 3.898 15 H 0.051 0.949 16 C 0.173 3.827 17 N -0.726 5.726 18 C -0.235 4.235 19 H 0.070 0.930 20 C -0.015 4.015 21 N -0.931 5.931 22 Si 0.904 3.096 23 H -0.281 1.281 24 H -0.293 1.293 25 H -0.292 1.292 26 C 0.072 3.928 27 N -0.473 5.473 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.153 0.847 32 H 0.183 0.817 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.044 0.956 38 H 0.089 0.911 39 H 0.021 0.979 40 H 0.035 0.965 41 H 0.386 0.614 42 H 0.253 0.747 43 H 0.116 0.884 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.229 -8.537 -10.813 18.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.020 3.980 3 C -0.228 4.228 4 C -0.014 4.014 5 N -0.196 5.196 6 C 0.011 3.989 7 C 0.363 3.637 8 O -0.385 6.385 9 N -0.320 5.320 10 C -0.009 4.009 11 C -0.203 4.203 12 C -0.003 4.003 13 O -0.290 6.290 14 C 0.042 3.958 15 H 0.069 0.931 16 C 0.045 3.955 17 N -0.370 5.370 18 C -0.366 4.366 19 H 0.088 0.912 20 C -0.211 4.211 21 N -0.580 5.580 22 Si 0.735 3.265 23 H -0.206 1.206 24 H -0.221 1.221 25 H -0.220 1.220 26 C -0.051 4.051 27 N -0.189 5.189 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.171 0.829 32 H 0.200 0.800 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.062 0.938 38 H 0.107 0.893 39 H 0.039 0.961 40 H 0.053 0.947 41 H 0.220 0.780 42 H 0.063 0.937 43 H 0.134 0.866 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.833 -9.792 -10.791 18.771 hybrid contribution -0.224 1.642 0.349 1.694 sum -12.056 -8.149 -10.442 17.911 Atomic orbital electron populations 1.20795 0.87377 1.04160 1.03949 1.21833 0.97846 0.87821 0.90470 1.23056 0.96783 1.00641 1.02348 1.23634 0.92220 0.96714 0.88831 1.69077 1.39488 0.98786 1.12209 1.22776 0.87447 0.93124 0.95561 1.17449 0.82143 0.86134 0.77925 1.90765 1.66566 1.32609 1.48608 1.47767 1.05627 1.09992 1.68626 1.21900 0.94030 0.84079 1.00872 1.22506 0.97258 1.01299 0.99239 1.22085 1.00279 0.82506 0.95398 1.86416 1.39760 1.25847 1.76971 1.22140 0.90715 0.91317 0.91667 0.93090 1.20535 0.96345 0.87799 0.90823 1.42250 1.75119 1.16280 1.03351 1.19263 1.32816 0.91601 0.92928 0.91216 1.24717 1.02406 0.98491 0.95441 1.69689 1.53784 1.37475 0.97096 0.86162 0.78624 0.84563 0.77109 1.20610 1.22051 1.21970 1.23046 0.97847 0.84504 0.99745 1.68047 1.08505 1.30538 1.11804 0.89458 0.89884 0.89786 0.82910 0.80030 0.91312 0.89189 0.89933 0.89613 0.93774 0.89314 0.96092 0.94740 0.77977 0.93713 0.86637 0.90557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 10.22 36.00 0.37 -0.40 16 2 C 0.17 1.86 6.82 -82.27 -0.56 1.30 16 3 C -0.21 -1.99 9.87 -39.17 -0.39 -2.38 16 4 C 0.15 1.76 11.29 -17.22 -0.19 1.56 16 5 N -0.48 -6.74 4.09 -11.12 -0.05 -6.79 16 6 C 0.28 4.32 7.36 -157.07 -1.16 3.16 16 7 C 0.58 9.38 7.65 -12.01 -0.09 9.29 16 8 O -0.51 -9.39 16.23 5.40 0.09 -9.31 16 9 N -0.59 -8.35 2.19 -173.32 -0.38 -8.73 16 10 C 0.11 1.35 6.12 -3.19 -0.02 1.33 16 11 C -0.16 -1.88 5.78 -27.18 -0.16 -2.04 16 12 C 0.07 1.09 6.38 36.42 0.23 1.32 16 13 O -0.37 -6.84 9.18 -26.51 -0.24 -7.08 16 14 C 0.10 1.77 1.86 -25.78 -0.05 1.73 16 15 H 0.05 0.99 6.98 -51.93 -0.36 0.62 16 16 C 0.17 3.47 5.94 -4.04 -0.02 3.44 16 17 N -0.73 -18.58 5.49 -59.91 -0.33 -18.90 16 18 C -0.23 -6.52 9.99 -15.06 -0.15 -6.67 16 19 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 20 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 21 N -0.93 -28.49 13.06 55.49 0.72 -27.76 16 22 Si 0.90 22.28 29.55 -169.99 -5.02 17.25 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 26 C 0.07 1.03 4.40 -3.83 -0.02 1.01 16 27 N -0.47 -6.98 10.08 -7.38 -0.07 -7.06 16 28 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.39 8.10 -51.93 -0.42 -0.03 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.15 0.95 8.06 -52.49 -0.42 0.52 16 32 H 0.18 1.84 8.02 -52.49 -0.42 1.42 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.09 1.12 7.08 -51.93 -0.37 0.75 16 35 H 0.08 0.97 8.01 -51.93 -0.42 0.56 16 36 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.04 0.68 7.40 -51.93 -0.38 0.30 16 38 H 0.09 1.22 8.14 -51.92 -0.42 0.79 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.04 0.64 7.90 -51.93 -0.41 0.23 16 41 H 0.39 10.78 7.53 -40.82 -0.31 10.47 16 42 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 43 H 0.12 1.61 5.23 -52.11 -0.27 1.33 16 44 H 0.08 1.02 8.11 -51.93 -0.42 0.60 16 LS Contribution 357.77 15.07 5.39 5.39 Total: -1.00 -35.19 357.77 -8.48 -43.67 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -6.29 Total: 7.18 kcal Atomic # 6 Polarization: 14.44 SS G_CDS: -2.30 Total: 12.14 kcal Atomic # 7 Polarization: -69.14 SS G_CDS: -0.10 Total: -69.24 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.16 Total: -16.39 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.19 -8.48 -43.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200388111.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.198 kcal (2) G-P(sol) polarization free energy of solvation -35.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds