Wall clock time and date at job start Tue Mar 31 2020 12:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38818 * 120.41745 * 2 1 4 4 C 1.38784 * 118.50749 * 180.02562 * 3 2 1 5 5 N 1.32128 * 119.16318 * 359.73514 * 4 3 2 6 6 C 1.32441 * 120.76872 * 0.54202 * 5 4 3 7 7 C 1.48541 * 119.18880 * 179.71897 * 6 5 4 8 8 O 1.21464 * 120.00181 * 172.20072 * 7 6 5 9 9 N 1.34779 * 119.99337 * 352.20610 * 7 6 5 10 10 C 1.47519 * 118.75206 * 173.78386 * 9 7 6 11 11 C 1.53567 * 111.02253 * 221.62275 * 10 9 7 12 12 C 1.51537 * 109.58541 * 39.97953 * 11 10 9 13 13 O 1.42148 * 108.74967 * 268.59701 * 12 11 10 14 14 C 1.38007 * 119.44217 * 87.23650 * 13 12 11 15 15 H 1.08997 * 109.47355 * 56.56508 * 14 13 12 16 16 C 1.53005 * 109.47263 * 176.56147 * 14 13 12 17 17 N 1.46499 * 109.47020 * 300.00254 * 16 14 13 18 18 C 1.36933 * 119.99834 * 180.02562 * 17 16 14 19 19 H 1.08000 * 120.00451 * 359.97438 * 18 17 16 20 20 C 1.38813 * 119.99764 * 179.97438 * 18 17 16 21 21 N 1.31614 * 120.00205 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99849 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47234 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47062 * 119.99703 * 22 20 18 25 25 H 1.48501 * 109.47180 * 239.99832 * 22 20 18 26 26 C 1.45122 * 118.76035 * 353.77918 * 9 7 6 27 27 N 1.32100 * 120.41727 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.47673 * 269.97498 * 1 2 3 29 29 H 1.09002 * 109.47373 * 29.97815 * 1 2 3 30 30 H 1.08999 * 109.47109 * 149.97959 * 1 2 3 31 31 H 1.08001 * 120.74777 * 0.04457 * 3 2 1 32 32 H 1.07994 * 120.41772 * 179.97438 * 4 3 2 33 33 H 1.08999 * 109.16878 * 101.22417 * 10 9 7 34 34 H 1.08997 * 109.16658 * 342.02171 * 10 9 7 35 35 H 1.08996 * 109.45817 * 279.94137 * 11 10 9 36 36 H 1.09004 * 109.45323 * 160.01164 * 11 10 9 37 37 H 1.09001 * 109.59081 * 28.37792 * 12 11 10 38 38 H 1.09007 * 109.59182 * 148.66644 * 12 11 10 39 39 H 1.09001 * 109.47093 * 60.00028 * 16 14 13 40 40 H 1.09001 * 109.47124 * 179.97438 * 16 14 13 41 41 H 0.97001 * 120.00097 * 359.97438 * 17 16 14 42 42 H 0.97003 * 119.99914 * 179.97438 * 21 20 18 43 43 H 1.09002 * 109.45459 * 330.70151 * 26 9 7 44 44 H 1.08997 * 109.45798 * 210.74764 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2098 1.1971 0.0000 4 6 3.5968 1.1509 -0.0005 5 7 4.2019 -0.0237 0.0043 6 6 3.5005 -1.1472 -0.0012 7 6 4.2169 -2.4484 -0.0018 8 8 3.5964 -3.4834 0.1360 9 7 5.5556 -2.4805 -0.1552 10 6 6.2553 -3.7714 -0.0133 11 6 7.5624 -3.6056 0.7756 12 6 7.3446 -2.6389 1.9221 13 8 7.6619 -1.3260 1.4792 14 6 6.6887 -0.5630 0.8666 15 1 5.8279 -0.4720 1.5290 16 6 7.2476 0.8286 0.5628 17 7 7.6590 1.4731 1.8124 18 6 8.1925 2.7340 1.7891 19 1 8.3104 3.2532 0.8494 20 6 8.5817 3.3449 2.9732 21 7 8.4376 2.7125 4.1184 22 14 9.3102 5.0648 2.9413 23 1 9.3657 5.5530 1.5400 24 1 8.4622 5.9767 3.7504 25 1 10.6824 5.0318 3.5082 26 6 6.2540 -1.2439 -0.4538 27 7 2.1757 -1.1392 -0.0005 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5141 31 1 1.6889 2.1432 0.0007 32 1 4.1743 2.0634 -0.0010 33 1 6.4826 -4.1660 -1.0036 34 1 5.6075 -4.4739 0.5108 35 1 8.3381 -3.2173 0.1157 36 1 7.8732 -4.5729 1.1705 37 1 6.3022 -2.6760 2.2384 38 1 7.9899 -2.9112 2.7574 39 1 8.1085 0.7377 -0.0996 40 1 6.4791 1.4310 0.0786 41 1 7.5527 1.0070 2.6564 42 1 8.7099 3.1393 4.9458 43 1 5.5915 -0.5769 -1.0055 44 1 7.1350 -1.4612 -1.0576 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200388111.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:25 Heat of formation + Delta-G solvation = -5.061608 kcal Electronic energy + Delta-G solvation = -28170.740541 eV Core-core repulsion = 24317.323600 eV Total energy + Delta-G solvation = -3853.416941 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.63726 -41.15796 -39.70350 -36.75358 -36.51301 -35.53058 -34.37288 -33.66896 -32.67561 -30.21225 -29.62693 -27.94788 -27.15422 -25.94813 -24.49585 -24.06335 -22.74261 -22.25474 -20.82724 -19.16865 -18.95362 -18.58650 -17.91415 -17.62105 -16.93015 -16.91669 -16.61785 -16.43188 -16.07554 -15.64685 -15.33367 -15.07660 -14.82238 -14.69980 -14.51641 -14.26601 -13.95421 -13.76551 -13.56303 -13.36324 -13.18840 -13.14529 -12.78279 -12.68679 -12.42254 -12.06702 -12.06163 -11.86669 -11.77480 -11.67812 -11.42943 -11.09648 -10.90827 -10.58282 -10.55846 -10.20874 -9.69703 -8.90530 -7.86680 -5.14734 -0.65471 -0.00336 1.38339 1.51156 1.52702 1.53202 1.62665 2.60381 2.63253 2.73780 2.81892 3.00818 3.47739 3.50155 3.65053 3.76238 3.84436 4.01376 4.07888 4.09939 4.17011 4.27886 4.34177 4.46778 4.50090 4.57536 4.61364 4.71062 4.72041 4.76142 4.77732 4.89315 4.99230 5.03717 5.12757 5.22097 5.28787 5.39553 5.40300 5.56570 5.87374 6.00162 6.33809 6.65892 6.82574 6.94245 7.40587 8.17847 8.41662 9.37722 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011258 B = 0.004632 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.493668 B = 6043.361784 C = 8045.544265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.154 3.846 3 C -0.183 4.183 4 C 0.132 3.868 5 N -0.491 5.491 6 C 0.256 3.744 7 C 0.574 3.426 8 O -0.545 6.545 9 N -0.583 5.583 10 C 0.108 3.892 11 C -0.151 4.151 12 C 0.069 3.931 13 O -0.400 6.400 14 C 0.115 3.885 15 H 0.028 0.972 16 C 0.173 3.827 17 N -0.739 5.739 18 C -0.234 4.234 19 H 0.082 0.918 20 C -0.079 4.079 21 N -0.974 5.974 22 Si 0.972 3.028 23 H -0.261 1.261 24 H -0.295 1.295 25 H -0.299 1.299 26 C 0.086 3.914 27 N -0.502 5.502 28 H 0.096 0.904 29 H 0.116 0.884 30 H 0.077 0.923 31 H 0.196 0.804 32 H 0.196 0.804 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.116 0.884 37 H 0.029 0.971 38 H 0.095 0.905 39 H 0.022 0.978 40 H 0.055 0.945 41 H 0.371 0.629 42 H 0.248 0.752 43 H 0.122 0.878 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.726 -7.462 -12.495 19.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.008 3.992 3 C -0.204 4.204 4 C -0.032 4.032 5 N -0.209 5.209 6 C -0.014 4.014 7 C 0.359 3.641 8 O -0.421 6.421 9 N -0.315 5.315 10 C -0.012 4.012 11 C -0.189 4.189 12 C -0.007 4.007 13 O -0.320 6.320 14 C 0.056 3.944 15 H 0.046 0.954 16 C 0.046 3.954 17 N -0.381 5.381 18 C -0.366 4.366 19 H 0.100 0.900 20 C -0.271 4.271 21 N -0.625 5.625 22 Si 0.802 3.198 23 H -0.185 1.185 24 H -0.222 1.222 25 H -0.227 1.227 26 C -0.038 4.038 27 N -0.219 5.219 28 H 0.114 0.886 29 H 0.134 0.866 30 H 0.096 0.904 31 H 0.213 0.787 32 H 0.213 0.787 33 H 0.110 0.890 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.134 0.866 37 H 0.047 0.953 38 H 0.113 0.887 39 H 0.040 0.960 40 H 0.072 0.928 41 H 0.202 0.798 42 H 0.057 0.943 43 H 0.140 0.860 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.327 -8.716 -12.534 19.622 hybrid contribution -0.138 1.311 0.866 1.577 sum -12.465 -7.405 -11.669 18.611 Atomic orbital electron populations 1.20931 0.84623 1.05508 1.04843 1.22563 0.99603 0.87397 0.89635 1.23465 0.95918 1.01859 0.99159 1.24016 0.93640 0.96332 0.89216 1.68964 1.40029 0.99249 1.12685 1.22594 0.87943 0.93072 0.97773 1.17749 0.82648 0.86345 0.77404 1.90725 1.67272 1.33732 1.50399 1.47849 1.05227 1.10648 1.67756 1.22100 0.93857 0.83062 1.02218 1.22414 0.96891 1.01767 0.97811 1.22270 0.99528 0.81786 0.97097 1.86345 1.40473 1.27589 1.77544 1.21866 0.89343 0.90488 0.92747 0.95405 1.20699 0.96683 0.89322 0.88683 1.42460 1.75178 1.15972 1.04492 1.19720 1.31289 0.92313 0.93260 0.90006 1.25550 1.03807 1.02520 0.95182 1.69866 1.55751 1.39286 0.97618 0.85080 0.76999 0.79890 0.77842 1.18518 1.22205 1.22700 1.22859 0.98410 0.84585 0.97919 1.68041 1.08512 1.32672 1.12724 0.88590 0.86578 0.90404 0.78730 0.78696 0.88982 0.89815 0.89670 0.86558 0.95268 0.88661 0.96043 0.92751 0.79830 0.94350 0.86032 0.89056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.25 10.22 71.23 0.73 -0.52 16 2 C 0.15 3.21 6.82 42.66 0.29 3.50 16 3 C -0.18 -3.08 9.87 22.54 0.22 -2.86 16 4 C 0.13 2.90 11.29 84.78 0.96 3.85 16 5 N -0.49 -13.75 4.09 -189.09 -0.77 -14.52 16 6 C 0.26 7.98 7.36 137.68 1.01 8.99 16 7 C 0.57 18.99 7.65 86.99 0.67 19.66 16 8 O -0.55 -20.64 16.23 -3.60 -0.06 -20.70 16 9 N -0.58 -16.47 2.19 -820.58 -1.80 -18.27 16 10 C 0.11 2.48 6.12 86.37 0.53 3.00 16 11 C -0.15 -3.21 5.78 30.30 0.18 -3.04 16 12 C 0.07 2.04 6.38 71.50 0.46 2.49 16 13 O -0.40 -14.84 9.18 -117.77 -1.08 -15.93 16 14 C 0.12 4.05 1.86 31.21 0.06 4.10 16 15 H 0.03 1.12 6.98 -2.39 -0.02 1.10 16 16 C 0.17 6.84 5.94 86.38 0.51 7.36 16 17 N -0.74 -38.05 5.49 -343.44 -1.88 -39.94 16 18 C -0.23 -12.88 9.99 84.03 0.84 -12.04 16 19 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 20 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 21 N -0.97 -60.63 13.06 21.65 0.28 -60.35 16 22 Si 0.97 45.71 29.55 68.60 2.03 47.74 16 23 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 24 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 25 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 26 C 0.09 2.39 4.40 87.25 0.38 2.78 16 27 N -0.50 -14.90 10.08 -177.25 -1.79 -16.68 16 28 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.12 0.64 8.10 -2.39 -0.02 0.62 16 30 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.20 1.54 8.06 -2.91 -0.02 1.52 16 32 H 0.20 3.61 8.02 -2.91 -0.02 3.59 16 33 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.08 2.06 7.08 -2.39 -0.02 2.04 16 35 H 0.08 1.83 8.01 -2.39 -0.02 1.81 16 36 H 0.12 1.80 8.14 -2.38 -0.02 1.78 16 37 H 0.03 0.93 7.40 -2.39 -0.02 0.91 16 38 H 0.10 2.61 8.14 -2.38 -0.02 2.59 16 39 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.05 1.95 7.90 -2.39 -0.02 1.93 16 41 H 0.37 21.22 7.53 -92.71 -0.70 20.52 16 42 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 43 H 0.12 3.30 5.23 -2.75 -0.01 3.28 16 44 H 0.09 2.28 8.11 -2.39 -0.02 2.26 16 Total: -1.00 -78.31 357.77 2.55 -75.76 By element: Atomic # 1 Polarization: 29.34 SS G_CDS: 0.32 Total: 29.66 kcal Atomic # 6 Polarization: 25.92 SS G_CDS: 7.30 Total: 33.22 kcal Atomic # 7 Polarization: -143.80 SS G_CDS: -5.96 Total: -149.76 kcal Atomic # 8 Polarization: -35.49 SS G_CDS: -1.14 Total: -36.63 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -78.31 2.55 -75.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200388111.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.696 kcal (2) G-P(sol) polarization free energy of solvation -78.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds