Wall clock time and date at job start Tue Mar 31 2020 12:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38567 * 119.96994 * 2 1 4 4 C 1.38819 * 118.07218 * 180.21741 * 3 2 1 5 5 C 1.39719 * 117.89919 * 359.51476 * 4 3 2 6 6 C 1.48154 * 120.18813 * 180.27249 * 5 4 3 7 7 O 1.21519 * 119.99395 * 6.95733 * 6 5 4 8 8 N 1.34772 * 120.00086 * 186.95968 * 6 5 4 9 9 C 1.47512 * 118.75391 * 185.91630 * 8 6 5 10 10 C 1.53953 * 110.81803 * 138.25417 * 9 8 6 11 11 C 1.51532 * 109.72561 * 320.30771 * 10 9 8 12 12 O 1.42153 * 108.76899 * 91.29653 * 11 10 9 13 13 C 1.38016 * 119.43731 * 272.78077 * 12 11 10 14 14 H 1.08999 * 109.46489 * 303.42810 * 13 12 11 15 15 C 1.52990 * 109.47110 * 183.42600 * 13 12 11 16 16 N 1.46508 * 109.46964 * 64.98849 * 15 13 12 17 17 C 1.36932 * 119.99918 * 179.97438 * 16 15 13 18 18 H 1.07996 * 120.00621 * 359.97438 * 17 16 15 19 19 C 1.38818 * 119.99968 * 180.02562 * 17 16 15 20 20 N 1.31617 * 119.99761 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00226 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47319 * 59.99689 * 21 19 17 23 23 H 1.48496 * 109.47114 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47166 * 299.99729 * 21 19 17 25 25 C 1.45120 * 118.76031 * 6.18496 * 8 6 5 26 26 N 1.32787 * 119.63420 * 0.24688 * 5 4 3 27 27 N 1.28355 * 122.02524 * 0.02562 * 26 5 4 28 28 H 1.09006 * 109.47076 * 270.27851 * 1 2 3 29 29 H 1.08992 * 109.47138 * 30.27931 * 1 2 3 30 30 H 1.09000 * 109.47308 * 150.27675 * 1 2 3 31 31 H 1.07999 * 120.96315 * 0.02562 * 3 2 1 32 32 H 1.07997 * 121.05253 * 179.78811 * 4 3 2 33 33 H 1.08996 * 109.16786 * 258.77295 * 9 8 6 34 34 H 1.08998 * 109.16584 * 17.97570 * 9 8 6 35 35 H 1.09003 * 109.45676 * 200.17570 * 10 9 8 36 36 H 1.08999 * 109.27560 * 80.32602 * 10 9 8 37 37 H 1.08997 * 109.58858 * 331.50682 * 11 10 9 38 38 H 1.09008 * 109.58437 * 211.07975 * 11 10 9 39 39 H 1.09004 * 109.47392 * 184.98285 * 15 13 12 40 40 H 1.08999 * 109.47365 * 304.99045 * 15 13 12 41 41 H 0.96998 * 119.99431 * 0.02562 * 16 15 13 42 42 H 0.96995 * 120.00179 * 180.02562 * 20 19 17 43 43 H 1.09004 * 109.45901 * 29.31311 * 25 8 6 44 44 H 1.08999 * 109.46309 * 149.26752 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1992 1.2004 0.0000 4 6 3.5866 1.1544 -0.0046 5 6 4.1991 -0.1013 0.0014 6 6 5.6767 -0.2094 0.0029 7 8 6.3588 0.7887 0.1264 8 7 6.2644 -1.4147 -0.1327 9 6 7.7300 -1.5090 0.0046 10 6 8.1243 -2.7552 0.8181 11 6 7.1550 -2.9434 1.9675 12 8 6.0938 -3.7859 1.5376 13 6 4.9944 -3.2288 0.9166 14 1 4.5529 -2.4743 1.5678 15 6 3.9628 -4.3214 0.6293 16 7 3.4604 -4.8634 1.8944 17 6 2.5209 -5.8596 1.8874 18 1 2.1499 -6.2454 0.9494 19 6 2.0445 -6.3728 3.0860 20 7 2.4963 -5.9022 4.2291 21 14 0.7634 -7.7321 3.0765 22 1 1.3064 -8.9192 2.3686 23 1 0.4240 -8.1021 4.4740 24 1 -0.4583 -7.2561 2.3794 25 6 5.4320 -2.5697 -0.4140 26 7 3.4496 -1.1974 0.0063 27 7 2.1672 -1.1451 0.0052 28 1 -0.3633 0.0050 1.0277 29 1 -0.3633 0.8874 -0.5181 30 1 -0.3634 -0.8924 -0.5095 31 1 1.6745 2.1444 0.0004 32 1 4.1740 2.0607 -0.0083 33 1 8.1793 -1.5675 -0.9868 34 1 8.1000 -0.6182 0.5122 35 1 9.1331 -2.6281 1.2110 36 1 8.0946 -3.6317 0.1709 37 1 6.7540 -1.9759 2.2696 38 1 7.6712 -3.4061 2.8088 39 1 3.1344 -3.8986 0.0608 40 1 4.4298 -5.1194 0.0522 41 1 3.7929 -4.5161 2.7368 42 1 2.1637 -6.2610 5.0667 43 1 4.5494 -2.2542 -0.9705 44 1 5.9970 -3.2888 -1.0070 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200453466.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:17 Heat of formation + Delta-G solvation = 23.131254 kcal Electronic energy + Delta-G solvation = -28225.664201 eV Core-core repulsion = 24373.469795 eV Total energy + Delta-G solvation = -3852.194407 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.56870 -40.09192 -38.48147 -35.44805 -34.84780 -34.07436 -33.26672 -32.75390 -30.85809 -28.86697 -28.57139 -26.55309 -25.48160 -24.76375 -23.52218 -22.59160 -21.59792 -20.82001 -19.92876 -18.22867 -17.38808 -17.06082 -16.48897 -16.40227 -15.92777 -15.71824 -15.33538 -15.14812 -14.61366 -14.33669 -14.04552 -13.84007 -13.51825 -13.38581 -13.05712 -13.00912 -12.92771 -12.61138 -12.40369 -12.17126 -12.05740 -11.76116 -11.35827 -11.06587 -10.81756 -10.68860 -10.63720 -10.45942 -10.24221 -10.05984 -9.95338 -9.77220 -9.66856 -9.55751 -9.27571 -8.69998 -8.51157 -6.70005 -5.58237 -2.84496 0.28631 0.60401 2.45898 2.70880 3.45538 3.54643 3.58048 3.59610 3.66625 4.11272 4.13017 4.27210 4.40036 4.64561 4.72785 4.76945 4.79362 4.91481 5.12424 5.21688 5.26960 5.37080 5.38385 5.42142 5.49517 5.60358 5.66499 5.68938 5.73394 5.76062 5.80833 5.95751 5.99563 6.12062 6.23026 6.28143 6.43143 6.50655 6.96859 6.97711 7.14348 7.83332 7.85116 8.16185 8.48700 8.60509 9.71509 10.32668 10.68243 11.65169 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010514 B = 0.005050 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.390041 B = 5542.774735 C = 7738.935746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.088 3.912 3 C -0.126 4.126 4 C -0.063 4.063 5 C 0.004 3.996 6 C 0.572 3.428 7 O -0.537 6.537 8 N -0.586 5.586 9 C 0.110 3.890 10 C -0.165 4.165 11 C 0.073 3.927 12 O -0.372 6.372 13 C 0.102 3.898 14 H 0.051 0.949 15 C 0.171 3.829 16 N -0.724 5.724 17 C -0.227 4.227 18 H 0.069 0.931 19 C -0.018 4.018 20 N -0.936 5.936 21 Si 0.905 3.095 22 H -0.287 1.287 23 H -0.293 1.293 24 H -0.287 1.287 25 C 0.069 3.931 26 N -0.185 5.185 27 N -0.229 5.229 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.155 0.845 32 H 0.159 0.841 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.044 0.956 38 H 0.089 0.911 39 H 0.047 0.953 40 H 0.020 0.980 41 H 0.384 0.616 42 H 0.252 0.748 43 H 0.115 0.885 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.730 16.755 -11.175 20.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.055 4.055 3 C -0.155 4.155 4 C -0.092 4.092 5 C -0.141 4.141 6 C 0.357 3.643 7 O -0.414 6.414 8 N -0.317 5.317 9 C -0.011 4.011 10 C -0.203 4.203 11 C -0.003 4.003 12 O -0.290 6.290 13 C 0.042 3.958 14 H 0.068 0.932 15 C 0.043 3.957 16 N -0.368 5.368 17 C -0.358 4.358 18 H 0.087 0.913 19 C -0.213 4.213 20 N -0.586 5.586 21 Si 0.736 3.264 22 H -0.214 1.214 23 H -0.219 1.219 24 H -0.214 1.214 25 C -0.055 4.055 26 N -0.031 5.031 27 N -0.073 5.073 28 H 0.108 0.892 29 H 0.098 0.902 30 H 0.107 0.893 31 H 0.173 0.827 32 H 0.177 0.823 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.062 0.938 38 H 0.107 0.893 39 H 0.065 0.935 40 H 0.038 0.962 41 H 0.218 0.782 42 H 0.062 0.938 43 H 0.132 0.868 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.979 15.307 -11.144 19.578 hybrid contribution -0.483 1.226 0.336 1.360 sum 4.496 16.533 -10.808 20.258 Atomic orbital electron populations 1.20769 0.87060 1.04292 1.04228 1.23190 0.99549 0.90435 0.92335 1.22296 0.94151 1.00165 0.98910 1.22338 0.95069 0.98822 0.93011 1.22795 0.96300 0.92474 1.02572 1.17767 0.85595 0.83729 0.77178 1.90758 1.63777 1.36012 1.50854 1.47853 1.07837 1.07778 1.68243 1.21994 0.78501 0.99894 1.00728 1.22571 1.00461 0.98214 0.99073 1.22091 0.87924 0.94846 0.95489 1.86438 1.28722 1.36964 1.76859 1.22150 0.86184 0.96339 0.91140 0.93169 1.20585 0.92236 0.92106 0.90786 1.42188 1.48504 1.43819 1.02285 1.19186 1.13740 1.10537 0.92371 0.91324 1.24689 1.00816 1.00440 0.95354 1.69667 1.46937 1.45540 0.96420 0.86293 0.81645 0.82196 0.76230 1.21440 1.21916 1.21433 1.23077 0.95411 0.86942 1.00082 1.73895 0.99611 1.24439 1.05166 1.73350 1.00991 1.24169 1.08774 0.89205 0.90204 0.89308 0.82690 0.82334 0.91298 0.89176 0.89646 0.89944 0.93772 0.89304 0.93541 0.96190 0.78209 0.93773 0.86773 0.90149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.19 36.00 0.37 -0.51 16 2 C 0.09 1.01 6.87 -82.32 -0.57 0.44 16 3 C -0.13 -1.16 9.86 -39.25 -0.39 -1.55 16 4 C -0.06 -0.70 9.73 -38.81 -0.38 -1.08 16 5 C 0.00 0.05 6.59 -82.83 -0.55 -0.49 16 6 C 0.57 8.46 7.61 -12.19 -0.09 8.36 16 7 O -0.54 -8.59 15.76 5.35 0.08 -8.51 16 8 N -0.59 -8.16 2.18 -173.23 -0.38 -8.53 16 9 C 0.11 1.28 6.16 -2.99 -0.02 1.26 16 10 C -0.16 -1.87 5.79 -26.98 -0.16 -2.03 16 11 C 0.07 1.08 6.37 36.42 0.23 1.31 16 12 O -0.37 -7.02 9.38 -26.54 -0.25 -7.27 16 13 C 0.10 1.89 1.82 -25.79 -0.05 1.84 16 14 H 0.05 1.03 7.04 -51.93 -0.37 0.67 16 15 C 0.17 3.73 5.92 -4.04 -0.02 3.71 16 16 N -0.72 -19.66 5.54 -59.91 -0.33 -19.99 16 17 C -0.23 -6.64 9.99 -15.06 -0.15 -6.79 16 18 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 19 C -0.02 -0.53 5.50 -17.43 -0.10 -0.63 16 20 N -0.94 -29.59 13.06 55.49 0.72 -28.87 16 21 Si 0.90 23.18 29.55 -169.99 -5.02 18.15 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 C 0.07 1.02 4.40 -3.83 -0.02 1.01 16 26 N -0.18 -2.90 5.43 33.32 0.18 -2.72 16 27 N -0.23 -3.55 11.43 33.62 0.38 -3.16 16 28 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 0.41 8.09 -51.93 -0.42 -0.01 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.16 0.81 8.06 -52.49 -0.42 0.38 16 32 H 0.16 1.46 7.73 -52.49 -0.41 1.05 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.09 1.07 7.07 -51.93 -0.37 0.70 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.97 8.01 -51.93 -0.42 0.56 16 37 H 0.04 0.68 7.41 -51.93 -0.38 0.29 16 38 H 0.09 1.22 8.14 -51.92 -0.42 0.80 16 39 H 0.05 1.01 8.02 -51.93 -0.42 0.60 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.38 11.22 7.65 -40.82 -0.31 10.91 16 42 H 0.25 7.72 8.31 -40.82 -0.34 7.38 16 43 H 0.11 1.72 5.21 -52.08 -0.27 1.45 16 44 H 0.08 1.10 8.11 -51.93 -0.42 0.68 16 LS Contribution 357.85 15.07 5.39 5.39 Total: -1.00 -35.75 357.85 -7.38 -43.12 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -6.29 Total: 7.51 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: -1.88 Total: 4.87 kcal Atomic # 7 Polarization: -63.85 SS G_CDS: 0.58 Total: -63.27 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: -0.16 Total: -15.78 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -5.02 Total: 18.15 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.75 -7.38 -43.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200453466.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.256 kcal (2) G-P(sol) polarization free energy of solvation -35.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds